EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0021270 (Gene tree)
Gene ID: 110336586
Gene Symbol: Lig4
Alias: 5830471N16Rik|DNA ligase IV|tiny
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 7709 bases
Position: chr19:28456835-28464543
Accession: 110336586
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0046579	RNA_ligase	PF09414.10	8.7e-10	1	1
MGP_PahariEiJ_P0046580	RNA_ligase	PF09414.10	8.7e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0046579	-	4031	XM_021219230	MGP_PahariEiJ_P0046579	911 (aa)	XP_021074889	UPI000A310EE0
MGP_PahariEiJ_T0046580	-	3104	-	MGP_PahariEiJ_P0046580	911 (aa)	-	UPI000A310EE0

Gene Model

Click here to download MGP_PahariEiJ_G0021270's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0021270's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0021270	Lig4	100	87.047	ENSG00000174405	LIG4	100	87.047	Homo_sapiens
MGP_PahariEiJ_G0021270	Lig4	99	65.055	ENSAPOG00000000866	lig4	99	65.055	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0021270	Lig4	100	83.644	ENSAMEG00000019685	LIG4	99	83.644	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0021270	Lig4	99	65.567	ENSACIG00000018309	lig4	99	65.567	Amphilophus_citrinellus
MGP_PahariEiJ_G0021270	Lig4	99	64.615	ENSAOCG00000011768	lig4	99	64.615	Amphiprion_ocellaris
MGP_PahariEiJ_G0021270	Lig4	99	64.835	ENSAPEG00000017815	lig4	99	64.835	Amphiprion_percula
MGP_PahariEiJ_G0021270	Lig4	99	65.198	ENSATEG00000005583	lig4	99	65.198	Anabas_testudineus
MGP_PahariEiJ_G0021270	Lig4	97	73.977	ENSAPLG00000001673	LIG4	99	73.977	Anas_platyrhynchos
MGP_PahariEiJ_G0021270	Lig4	99	74.529	ENSACAG00000014566	LIG4	99	74.529	Anolis_carolinensis
MGP_PahariEiJ_G0021270	Lig4	100	86.937	ENSANAG00000012446	LIG4	100	86.937	Aotus_nancymaae
MGP_PahariEiJ_G0021270	Lig4	99	64.686	ENSACLG00000027051	lig4	99	64.686	Astatotilapia_calliptera
MGP_PahariEiJ_G0021270	Lig4	99	64.114	ENSAMXG00000008192	lig4	94	64.114	Astyanax_mexicanus
MGP_PahariEiJ_G0021270	Lig4	100	85.291	ENSBTAG00000015868	LIG4	100	85.291	Bos_taurus
MGP_PahariEiJ_G0021270	Lig4	100	86.059	ENSCJAG00000014689	LIG4	100	86.059	Callithrix_jacchus
MGP_PahariEiJ_G0021270	Lig4	100	85.071	ENSCAFG00000006031	LIG4	100	85.071	Canis_familiaris
MGP_PahariEiJ_G0021270	Lig4	100	85.071	ENSCAFG00020021230	LIG4	100	85.071	Canis_lupus_dingo
MGP_PahariEiJ_G0021270	Lig4	100	84.852	ENSCHIG00000001019	LIG4	100	84.852	Capra_hircus
MGP_PahariEiJ_G0021270	Lig4	99	85.493	ENSCAPG00000006284	LIG4	99	85.493	Cavia_aperea
MGP_PahariEiJ_G0021270	Lig4	100	85.401	ENSCPOG00000014266	LIG4	100	85.401	Cavia_porcellus
MGP_PahariEiJ_G0021270	Lig4	100	85.950	ENSCCAG00000019971	LIG4	100	85.950	Cebus_capucinus
MGP_PahariEiJ_G0021270	Lig4	100	86.169	ENSCATG00000021075	LIG4	100	86.169	Cercocebus_atys
MGP_PahariEiJ_G0021270	Lig4	100	86.389	ENSCLAG00000003376	LIG4	100	86.389	Chinchilla_lanigera
MGP_PahariEiJ_G0021270	Lig4	100	86.389	ENSCSAG00000000211	LIG4	100	86.389	Chlorocebus_sabaeus
MGP_PahariEiJ_G0021270	Lig4	99	76.821	ENSCPBG00000023291	LIG4	100	76.362	Chrysemys_picta_bellii
MGP_PahariEiJ_G0021270	Lig4	69	46.009	ENSCING00000009536	-	97	46.009	Ciona_intestinalis
MGP_PahariEiJ_G0021270	Lig4	83	45.729	ENSCSAVG00000010336	-	98	45.729	Ciona_savignyi
MGP_PahariEiJ_G0021270	Lig4	100	86.498	ENSCANG00000005805	LIG4	100	86.498	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0021270	Lig4	100	92.654	ENSCGRG00001012072	Lig4	100	92.654	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0021270	Lig4	100	92.654	ENSCGRG00000013417	Lig4	100	92.654	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0021270	Lig4	97	64.773	ENSCSEG00000013905	lig4	95	64.773	Cynoglossus_semilaevis
MGP_PahariEiJ_G0021270	Lig4	99	65.338	ENSCVAG00000007896	lig4	99	65.338	Cyprinodon_variegatus
MGP_PahariEiJ_G0021270	Lig4	99	63.636	ENSDARG00000060620	lig4	98	63.636	Danio_rerio
MGP_PahariEiJ_G0021270	Lig4	100	84.649	ENSDNOG00000000513	LIG4	100	84.649	Dasypus_novemcinctus
MGP_PahariEiJ_G0021270	Lig4	100	85.620	ENSDORG00000027303	Lig4	100	85.620	Dipodomys_ordii
MGP_PahariEiJ_G0021270	Lig4	89	31.352	FBgn0030506	Lig4	91	31.352	Drosophila_melanogaster
MGP_PahariEiJ_G0021270	Lig4	99	80.931	ENSETEG00000015563	LIG4	100	81.042	Echinops_telfairi
MGP_PahariEiJ_G0021270	Lig4	99	43.933	ENSEBUG00000014243	lig4	99	43.933	Eptatretus_burgeri
MGP_PahariEiJ_G0021270	Lig4	100	85.950	ENSEASG00005022073	LIG4	100	85.950	Equus_asinus_asinus
MGP_PahariEiJ_G0021270	Lig4	100	85.620	ENSECAG00000003257	LIG4	100	85.620	Equus_caballus
MGP_PahariEiJ_G0021270	Lig4	99	65.711	ENSELUG00000006787	lig4	99	65.711	Esox_lucius
MGP_PahariEiJ_G0021270	Lig4	100	85.620	ENSFCAG00000031985	LIG4	100	85.620	Felis_catus
MGP_PahariEiJ_G0021270	Lig4	89	75.154	ENSFALG00000004214	LIG4	98	75.154	Ficedula_albicollis
MGP_PahariEiJ_G0021270	Lig4	100	85.181	ENSFDAG00000008973	LIG4	100	85.181	Fukomys_damarensis
MGP_PahariEiJ_G0021270	Lig4	99	64.066	ENSFHEG00000007398	lig4	90	64.176	Fundulus_heteroclitus
MGP_PahariEiJ_G0021270	Lig4	85	64.212	ENSGMOG00000012843	lig4	99	64.212	Gadus_morhua
MGP_PahariEiJ_G0021270	Lig4	100	73.362	ENSGALG00000016854	LIG4	100	73.362	Gallus_gallus
MGP_PahariEiJ_G0021270	Lig4	99	64.922	ENSGAFG00000019779	lig4	95	64.466	Gambusia_affinis
MGP_PahariEiJ_G0021270	Lig4	99	63.123	ENSGACG00000014135	lig4	99	63.123	Gasterosteus_aculeatus
MGP_PahariEiJ_G0021270	Lig4	100	86.937	ENSGGOG00000027771	LIG4	100	86.937	Gorilla_gorilla
MGP_PahariEiJ_G0021270	Lig4	99	64.466	ENSHBUG00000006245	lig4	99	64.466	Haplochromis_burtoni
MGP_PahariEiJ_G0021270	Lig4	100	84.852	ENSHGLG00000000718	LIG4	100	84.852	Heterocephalus_glaber_female
MGP_PahariEiJ_G0021270	Lig4	100	84.852	ENSHGLG00100003265	LIG4	100	84.852	Heterocephalus_glaber_male
MGP_PahariEiJ_G0021270	Lig4	99	64.396	ENSHCOG00000012010	lig4	99	64.396	Hippocampus_comes
MGP_PahariEiJ_G0021270	Lig4	99	65.275	ENSIPUG00000013748	lig4	99	65.275	Ictalurus_punctatus
MGP_PahariEiJ_G0021270	Lig4	100	86.279	ENSSTOG00000024303	LIG4	100	86.279	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0021270	Lig4	100	86.718	ENSJJAG00000006750	Lig4	100	86.718	Jaculus_jaculus
MGP_PahariEiJ_G0021270	Lig4	99	64.341	ENSKMAG00000001149	lig4	99	64.341	Kryptolebias_marmoratus
MGP_PahariEiJ_G0021270	Lig4	91	65.542	ENSLBEG00000014578	lig4	99	65.542	Labrus_bergylta
MGP_PahariEiJ_G0021270	Lig4	99	71.018	ENSLACG00000003282	LIG4	99	71.018	Latimeria_chalumnae
MGP_PahariEiJ_G0021270	Lig4	99	70.044	ENSLOCG00000008901	lig4	98	70.044	Lepisosteus_oculatus
MGP_PahariEiJ_G0021270	Lig4	100	83.133	ENSLAFG00000031152	LIG4	100	83.133	Loxodonta_africana
MGP_PahariEiJ_G0021270	Lig4	100	86.279	ENSMFAG00000037235	LIG4	100	86.279	Macaca_fascicularis
MGP_PahariEiJ_G0021270	Lig4	100	86.279	ENSMMUG00000008874	LIG4	100	86.279	Macaca_mulatta
MGP_PahariEiJ_G0021270	Lig4	100	86.279	ENSMNEG00000023575	LIG4	100	86.279	Macaca_nemestrina
MGP_PahariEiJ_G0021270	Lig4	100	86.279	ENSMLEG00000026720	LIG4	100	86.279	Mandrillus_leucophaeus
MGP_PahariEiJ_G0021270	Lig4	99	65.385	ENSMAMG00000008472	lig4	99	65.385	Mastacembelus_armatus
MGP_PahariEiJ_G0021270	Lig4	99	64.686	ENSMZEG00005001855	lig4	99	64.686	Maylandia_zebra
MGP_PahariEiJ_G0021270	Lig4	100	73.362	ENSMGAG00000015532	LIG4	100	73.362	Meleagris_gallopavo
MGP_PahariEiJ_G0021270	Lig4	100	89.462	ENSMOCG00000019000	Lig4	100	89.462	Microtus_ochrogaster
MGP_PahariEiJ_G0021270	Lig4	99	64.009	ENSMMOG00000004390	lig4	99	64.009	Mola_mola
MGP_PahariEiJ_G0021270	Lig4	100	80.900	ENSMODG00000025064	LIG4	100	81.360	Monodelphis_domestica
MGP_PahariEiJ_G0021270	Lig4	99	64.563	ENSMALG00000008555	lig4	99	64.563	Monopterus_albus
MGP_PahariEiJ_G0021270	Lig4	100	97.256	MGP_CAROLIEiJ_G0030809	Lig4	100	97.256	Mus_caroli
MGP_PahariEiJ_G0021270	Lig4	100	97.475	ENSMUSG00000049717	Lig4	100	97.475	Mus_musculus
MGP_PahariEiJ_G0021270	Lig4	100	97.366	MGP_SPRETEiJ_G0031917	Lig4	100	97.366	Mus_spretus
MGP_PahariEiJ_G0021270	Lig4	100	84.303	ENSMPUG00000018675	LIG4	100	84.303	Mustela_putorius_furo
MGP_PahariEiJ_G0021270	Lig4	100	85.620	ENSMLUG00000001267	LIG4	100	85.620	Myotis_lucifugus
MGP_PahariEiJ_G0021270	Lig4	100	88.474	ENSNGAG00000013258	Lig4	100	88.474	Nannospalax_galili
MGP_PahariEiJ_G0021270	Lig4	99	64.906	ENSNBRG00000021252	lig4	99	65.017	Neolamprologus_brichardi
MGP_PahariEiJ_G0021270	Lig4	100	86.608	ENSNLEG00000007888	LIG4	100	86.608	Nomascus_leucogenys
MGP_PahariEiJ_G0021270	Lig4	100	84.852	ENSOPRG00000005765	LIG4	100	84.852	Ochotona_princeps
MGP_PahariEiJ_G0021270	Lig4	100	84.413	ENSODEG00000019683	LIG4	100	84.413	Octodon_degus
MGP_PahariEiJ_G0021270	Lig4	99	64.796	ENSONIG00000011969	lig4	98	64.796	Oreochromis_niloticus
MGP_PahariEiJ_G0021270	Lig4	100	86.389	ENSOCUG00000015734	LIG4	100	86.389	Oryctolagus_cuniculus
MGP_PahariEiJ_G0021270	Lig4	99	63.158	ENSORLG00000004041	lig4	99	63.268	Oryzias_latipes
MGP_PahariEiJ_G0021270	Lig4	99	63.706	ENSORLG00020019607	lig4	99	63.816	Oryzias_latipes_hni
MGP_PahariEiJ_G0021270	Lig4	99	63.268	ENSORLG00015017754	lig4	99	63.377	Oryzias_latipes_hsok
MGP_PahariEiJ_G0021270	Lig4	74	68.639	ENSOMEG00000003459	lig4	98	68.639	Oryzias_melastigma
MGP_PahariEiJ_G0021270	Lig4	100	85.855	ENSOGAG00000032120	LIG4	99	85.855	Otolemur_garnettii
MGP_PahariEiJ_G0021270	Lig4	82	86.174	ENSOARG00000005590	LIG4	98	86.174	Ovis_aries
MGP_PahariEiJ_G0021270	Lig4	100	86.828	ENSPPAG00000032998	LIG4	100	86.828	Pan_paniscus
MGP_PahariEiJ_G0021270	Lig4	100	86.059	ENSPPRG00000017804	LIG4	100	86.059	Panthera_pardus
MGP_PahariEiJ_G0021270	Lig4	100	86.059	ENSPTIG00000010051	LIG4	100	86.059	Panthera_tigris_altaica
MGP_PahariEiJ_G0021270	Lig4	100	86.937	ENSPTRG00000006025	LIG4	100	86.937	Pan_troglodytes
MGP_PahariEiJ_G0021270	Lig4	100	86.279	ENSPANG00000007562	LIG4	100	86.279	Papio_anubis
MGP_PahariEiJ_G0021270	Lig4	99	65.203	ENSPKIG00000011645	lig4	98	65.203	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0021270	Lig4	99	76.729	ENSPSIG00000001504	LIG4	99	76.729	Pelodiscus_sinensis
MGP_PahariEiJ_G0021270	Lig4	99	62.000	ENSPMGG00000013486	lig4	99	61.800	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0021270	Lig4	100	91.886	ENSPEMG00000000076	Lig4	100	91.886	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0021270	Lig4	100	81.140	ENSPCIG00000021882	LIG4	100	81.140	Phascolarctos_cinereus
MGP_PahariEiJ_G0021270	Lig4	99	64.739	ENSPFOG00000000797	lig4	99	64.286	Poecilia_formosa
MGP_PahariEiJ_G0021270	Lig4	99	64.627	ENSPLAG00000001196	lig4	99	64.176	Poecilia_latipinna
MGP_PahariEiJ_G0021270	Lig4	99	64.739	ENSPMEG00000021353	lig4	99	64.505	Poecilia_mexicana
MGP_PahariEiJ_G0021270	Lig4	99	64.294	ENSPREG00000007323	lig4	99	64.066	Poecilia_reticulata
MGP_PahariEiJ_G0021270	Lig4	100	86.718	ENSPPYG00000005540	LIG4	100	86.718	Pongo_abelii
MGP_PahariEiJ_G0021270	Lig4	100	85.840	ENSPVAG00000016403	LIG4	100	85.840	Pteropus_vampyrus
MGP_PahariEiJ_G0021270	Lig4	99	64.576	ENSPNYG00000009660	lig4	99	64.686	Pundamilia_nyererei
MGP_PahariEiJ_G0021270	Lig4	100	64.583	ENSPNAG00000028069	LIG4	100	64.583	Pygocentrus_nattereri
MGP_PahariEiJ_G0021270	Lig4	100	64.583	ENSPNAG00000028056	lig4	100	64.583	Pygocentrus_nattereri
MGP_PahariEiJ_G0021270	Lig4	100	94.512	ENSRNOG00000014605	Lig4	100	94.512	Rattus_norvegicus
MGP_PahariEiJ_G0021270	Lig4	100	85.181	ENSRBIG00000039962	LIG4	100	85.181	Rhinopithecus_bieti
MGP_PahariEiJ_G0021270	Lig4	100	86.169	ENSRROG00000006040	LIG4	100	86.169	Rhinopithecus_roxellana
MGP_PahariEiJ_G0021270	Lig4	100	86.169	ENSSBOG00000019029	LIG4	100	86.169	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0021270	Lig4	100	78.728	ENSSHAG00000009525	LIG4	100	78.728	Sarcophilus_harrisii
MGP_PahariEiJ_G0021270	Lig4	100	64.192	ENSSFOG00015012835	lig4	100	64.192	Scleropages_formosus
MGP_PahariEiJ_G0021270	Lig4	99	62.680	ENSSMAG00000011267	lig4	99	62.680	Scophthalmus_maximus
MGP_PahariEiJ_G0021270	Lig4	99	65.410	ENSSDUG00000010343	lig4	98	65.410	Seriola_dumerili
MGP_PahariEiJ_G0021270	Lig4	99	63.898	ENSSLDG00000003239	lig4	99	63.898	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0021270	Lig4	100	80.853	ENSSARG00000006573	LIG4	100	80.853	Sorex_araneus
MGP_PahariEiJ_G0021270	Lig4	93	76.185	ENSSPUG00000002444	LIG4	100	76.185	Sphenodon_punctatus
MGP_PahariEiJ_G0021270	Lig4	99	65.055	ENSSPAG00000001609	lig4	99	65.055	Stegastes_partitus
MGP_PahariEiJ_G0021270	Lig4	99	83.828	ENSSSCG00000009540	LIG4	99	83.828	Sus_scrofa
MGP_PahariEiJ_G0021270	Lig4	99	73.736	ENSTGUG00000010795	LIG4	100	73.736	Taeniopygia_guttata
MGP_PahariEiJ_G0021270	Lig4	99	65.116	ENSTRUG00000009984	lig4	99	65.116	Takifugu_rubripes
MGP_PahariEiJ_G0021270	Lig4	99	65.055	ENSTNIG00000010348	lig4	99	65.275	Tetraodon_nigroviridis
MGP_PahariEiJ_G0021270	Lig4	100	87.267	ENSTBEG00000017741	LIG4	100	87.267	Tupaia_belangeri
MGP_PahariEiJ_G0021270	Lig4	100	85.840	ENSTTRG00000012660	LIG4	100	85.840	Tursiops_truncatus
MGP_PahariEiJ_G0021270	Lig4	100	83.974	ENSUAMG00000003773	LIG4	100	83.974	Ursus_americanus
MGP_PahariEiJ_G0021270	Lig4	99	70.110	ENSXETG00000002654	lig4	99	70.110	Xenopus_tropicalis
MGP_PahariEiJ_G0021270	Lig4	99	64.516	ENSXCOG00000017401	lig4	99	64.066	Xiphophorus_couchianus
MGP_PahariEiJ_G0021270	Lig4	99	64.778	ENSXMAG00000015142	lig4	99	64.325	Xiphophorus_maculatus