EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0021311 (Gene tree)
Gene ID: 110336733
Gene Symbol: Upf3a
Alias: 2600001C03Rik|4930546M19Rik|RENT3A|UPF3
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 13579 bases
Position: chr19:32231714-32245292
Accession: 110336733
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0046720	Smg4_UPF3	PF03467.15	2.8e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0046720	-	1406	-	MGP_PahariEiJ_P0046720	422 (aa)	XP_021075114	UPI000A30C614

Gene Model

Click here to download MGP_PahariEiJ_G0021311's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0021311's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0021311	Upf3a	99	70.115	ENSG00000169062	UPF3A	99	70.192	Homo_sapiens
MGP_PahariEiJ_G0021311	Upf3a	87	59.200	ENSAPOG00000013484	upf3a	80	61.702	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0021311	Upf3a	57	63.600	ENSAPOG00000012775	upf3b	78	51.240	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0021311	Upf3a	92	69.802	ENSAMEG00000004259	UPF3A	88	69.802	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0021311	Upf3a	88	58.886	ENSACIG00000020468	upf3a	79	72.034	Amphilophus_citrinellus
MGP_PahariEiJ_G0021311	Upf3a	57	61.600	ENSAOCG00000000706	upf3b	78	48.747	Amphiprion_ocellaris
MGP_PahariEiJ_G0021311	Upf3a	87	58.933	ENSAOCG00000020784	upf3a	80	61.436	Amphiprion_ocellaris
MGP_PahariEiJ_G0021311	Upf3a	87	58.933	ENSAPEG00000003519	upf3a	80	61.436	Amphiprion_percula
MGP_PahariEiJ_G0021311	Upf3a	57	63.600	ENSAPEG00000005545	upf3b	78	50.552	Amphiprion_percula
MGP_PahariEiJ_G0021311	Upf3a	89	60.526	ENSATEG00000005843	upf3a	81	60.526	Anabas_testudineus
MGP_PahariEiJ_G0021311	Upf3a	84	67.760	ENSACAG00000001540	UPF3A	88	67.760	Anolis_carolinensis
MGP_PahariEiJ_G0021311	Upf3a	99	66.820	ENSANAG00000021713	UPF3A	87	66.506	Aotus_nancymaae
MGP_PahariEiJ_G0021311	Upf3a	56	55.085	ENSANAG00000025598	-	86	38.876	Aotus_nancymaae
MGP_PahariEiJ_G0021311	Upf3a	88	59.416	ENSACLG00000026274	upf3a	79	60.938	Astatotilapia_calliptera
MGP_PahariEiJ_G0021311	Upf3a	88	60.477	ENSAMXG00000002608	upf3a	82	60.477	Astyanax_mexicanus
MGP_PahariEiJ_G0021311	Upf3a	95	66.667	ENSCJAG00000019102	UPF3A	87	66.747	Callithrix_jacchus
MGP_PahariEiJ_G0021311	Upf3a	99	69.794	ENSCAFG00000006504	UPF3A	89	69.712	Canis_familiaris
MGP_PahariEiJ_G0021311	Upf3a	99	69.885	ENSCAFG00020014268	UPF3A	87	69.952	Canis_lupus_dingo
MGP_PahariEiJ_G0021311	Upf3a	99	65.668	ENSCHIG00000008682	UPF3A	86	66.129	Capra_hircus
MGP_PahariEiJ_G0021311	Upf3a	74	65.031	ENSTSYG00000001918	UPF3A	87	65.031	Carlito_syrichta
MGP_PahariEiJ_G0021311	Upf3a	89	69.072	ENSCPOG00000006824	UPF3A	93	67.332	Cavia_porcellus
MGP_PahariEiJ_G0021311	Upf3a	99	68.664	ENSCCAG00000018406	UPF3A	87	68.357	Cebus_capucinus
MGP_PahariEiJ_G0021311	Upf3a	99	70.588	ENSCATG00000029733	UPF3A	87	70.197	Cercocebus_atys
MGP_PahariEiJ_G0021311	Upf3a	99	69.626	ENSCSAG00000017388	UPF3A	87	69.193	Chlorocebus_sabaeus
MGP_PahariEiJ_G0021311	Upf3a	99	82.701	ENSCGRG00001017387	Upf3a	99	82.701	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0021311	Upf3a	99	82.227	ENSCGRG00000001468	Upf3a	95	82.426	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0021311	Upf3a	54	56.897	ENSCGRG00000007627	Upf3b	56	62.288	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0021311	Upf3a	54	62.605	ENSCSEG00000002046	upf3b	52	62.400	Cynoglossus_semilaevis
MGP_PahariEiJ_G0021311	Upf3a	87	59.640	ENSCSEG00000005106	upf3a	80	62.042	Cynoglossus_semilaevis
MGP_PahariEiJ_G0021311	Upf3a	87	60.533	ENSCVAG00000022333	upf3a	80	60.533	Cyprinodon_variegatus
MGP_PahariEiJ_G0021311	Upf3a	87	57.031	ENSDARG00000069297	upf3a	81	59.259	Danio_rerio
MGP_PahariEiJ_G0021311	Upf3a	89	70.588	ENSDNOG00000034391	UPF3A	89	70.588	Dasypus_novemcinctus
MGP_PahariEiJ_G0021311	Upf3a	96	59.242	ENSETEG00000010110	UPF3A	87	59.574	Echinops_telfairi
MGP_PahariEiJ_G0021311	Upf3a	99	68.664	ENSEASG00005021884	UPF3A	85	68.193	Equus_asinus_asinus
MGP_PahariEiJ_G0021311	Upf3a	95	67.470	ENSECAG00000017141	UPF3A	85	67.470	Equus_caballus
MGP_PahariEiJ_G0021311	Upf3a	79	62.798	ENSELUG00000011050	upf3a	72	62.798	Esox_lucius
MGP_PahariEiJ_G0021311	Upf3a	52	64.069	ENSELUG00000020389	upf3b	53	60.456	Esox_lucius
MGP_PahariEiJ_G0021311	Upf3a	95	68.510	ENSFCAG00000014602	UPF3A	87	68.750	Felis_catus
MGP_PahariEiJ_G0021311	Upf3a	76	60.237	ENSGMOG00000019615	upf3a	100	60.241	Gadus_morhua
MGP_PahariEiJ_G0021311	Upf3a	57	59.839	ENSGMOG00000001621	upf3b	52	59.839	Gadus_morhua
MGP_PahariEiJ_G0021311	Upf3a	76	63.580	ENSGACG00000001972	upf3a	100	63.580	Gasterosteus_aculeatus
MGP_PahariEiJ_G0021311	Upf3a	56	60.976	ENSGACG00000017435	upf3b	77	65.581	Gasterosteus_aculeatus
MGP_PahariEiJ_G0021311	Upf3a	98	53.919	ENSGGOG00000043074	-	78	58.839	Gorilla_gorilla
MGP_PahariEiJ_G0021311	Upf3a	99	69.816	ENSGGOG00000015428	UPF3A	87	69.398	Gorilla_gorilla
MGP_PahariEiJ_G0021311	Upf3a	87	57.895	ENSGGOG00000041219	-	81	59.511	Gorilla_gorilla
MGP_PahariEiJ_G0021311	Upf3a	87	59.574	ENSHBUG00000011325	upf3a	81	61.097	Haplochromis_burtoni
MGP_PahariEiJ_G0021311	Upf3a	90	70.526	ENSHGLG00000001544	UPF3A	90	70.526	Heterocephalus_glaber_female
MGP_PahariEiJ_G0021311	Upf3a	90	70.526	ENSHGLG00100013244	UPF3A	90	70.526	Heterocephalus_glaber_male
MGP_PahariEiJ_G0021311	Upf3a	88	60.630	ENSIPUG00000023450	upf3a	82	60.630	Ictalurus_punctatus
MGP_PahariEiJ_G0021311	Upf3a	56	64.372	ENSIPUG00000019249	upf3b	86	47.549	Ictalurus_punctatus
MGP_PahariEiJ_G0021311	Upf3a	54	73.913	ENSSTOG00000030282	-	87	75.845	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0021311	Upf3a	87	60.367	ENSKMAG00000004381	upf3a	80	61.214	Kryptolebias_marmoratus
MGP_PahariEiJ_G0021311	Upf3a	87	51.862	ENSLBEG00000021570	upf3a	80	54.667	Labrus_bergylta
MGP_PahariEiJ_G0021311	Upf3a	57	59.600	ENSLBEG00000028689	upf3b	54	59.600	Labrus_bergylta
MGP_PahariEiJ_G0021311	Upf3a	59	42.446	ENSLACG00000006645	UPF3A	83	38.339	Latimeria_chalumnae
MGP_PahariEiJ_G0021311	Upf3a	91	59.548	ENSLOCG00000002665	upf3a	81	61.376	Lepisosteus_oculatus
MGP_PahariEiJ_G0021311	Upf3a	57	63.200	ENSLOCG00000015238	upf3b	57	63.672	Lepisosteus_oculatus
MGP_PahariEiJ_G0021311	Upf3a	67	50.331	ENSLAFG00000001267	UPF3B	69	54.740	Loxodonta_africana
MGP_PahariEiJ_G0021311	Upf3a	76	60.511	ENSLAFG00000023358	UPF3A	83	60.519	Loxodonta_africana
MGP_PahariEiJ_G0021311	Upf3a	99	67.294	ENSMFAG00000045016	UPF3A	87	66.749	Macaca_fascicularis
MGP_PahariEiJ_G0021311	Upf3a	99	67.453	ENSMMUG00000007449	UPF3A	86	66.914	Macaca_mulatta
MGP_PahariEiJ_G0021311	Upf3a	99	65.138	ENSMNEG00000036402	UPF3A	80	69.895	Macaca_nemestrina
MGP_PahariEiJ_G0021311	Upf3a	84	72.269	ENSMLEG00000014726	UPF3A	84	72.269	Mandrillus_leucophaeus
MGP_PahariEiJ_G0021311	Upf3a	87	61.968	ENSMAMG00000018364	upf3a	77	62.234	Mastacembelus_armatus
MGP_PahariEiJ_G0021311	Upf3a	88	59.416	ENSMZEG00005021571	upf3a	79	60.938	Maylandia_zebra
MGP_PahariEiJ_G0021311	Upf3a	80	67.429	ENSMGAG00000014837	UPF3A	87	67.429	Meleagris_gallopavo
MGP_PahariEiJ_G0021311	Upf3a	84	80.056	ENSMOCG00000000550	Upf3a	98	80.056	Microtus_ochrogaster
MGP_PahariEiJ_G0021311	Upf3a	84	69.919	ENSMODG00000003159	UPF3A	86	70.190	Monodelphis_domestica
MGP_PahariEiJ_G0021311	Upf3a	100	92.654	MGP_CAROLIEiJ_G0030848	Upf3a	100	92.654	Mus_caroli
MGP_PahariEiJ_G0021311	Upf3a	100	94.550	ENSMUSG00000038398	Upf3a	100	94.550	Mus_musculus
MGP_PahariEiJ_G0021311	Upf3a	100	93.839	MGP_SPRETEiJ_G0031958	Upf3a	100	93.839	Mus_spretus
MGP_PahariEiJ_G0021311	Upf3a	99	69.676	ENSMPUG00000009139	UPF3A	86	69.249	Mustela_putorius_furo
MGP_PahariEiJ_G0021311	Upf3a	84	69.811	ENSMLUG00000015905	UPF3A	88	69.811	Myotis_lucifugus
MGP_PahariEiJ_G0021311	Upf3a	99	79.858	ENSNGAG00000019314	Upf3a	99	79.858	Nannospalax_galili
MGP_PahariEiJ_G0021311	Upf3a	87	59.574	ENSNBRG00000000828	upf3a	81	61.097	Neolamprologus_brichardi
MGP_PahariEiJ_G0021311	Upf3a	99	68.545	ENSNLEG00000007563	UPF3A	87	68.059	Nomascus_leucogenys
MGP_PahariEiJ_G0021311	Upf3a	51	77.064	ENSODEG00000009176	-	86	77.064	Octodon_degus
MGP_PahariEiJ_G0021311	Upf3a	84	57.766	ENSOANG00000006985	-	95	57.766	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0021311	Upf3a	81	64.205	ENSOCUG00000008450	UPF3A	77	62.198	Oryctolagus_cuniculus
MGP_PahariEiJ_G0021311	Upf3a	65	54.082	ENSORLG00000001026	upf3b	69	51.393	Oryzias_latipes
MGP_PahariEiJ_G0021311	Upf3a	87	60.270	ENSORLG00000010911	upf3a	79	60.270	Oryzias_latipes
MGP_PahariEiJ_G0021311	Upf3a	65	54.422	ENSORLG00020003758	upf3b	69	51.703	Oryzias_latipes_hni
MGP_PahariEiJ_G0021311	Upf3a	86	56.771	ENSORLG00020014317	upf3a	79	58.333	Oryzias_latipes_hni
MGP_PahariEiJ_G0021311	Upf3a	56	60.324	ENSORLG00015012954	upf3b	89	46.283	Oryzias_latipes_hsok
MGP_PahariEiJ_G0021311	Upf3a	87	59.409	ENSOMEG00000014425	upf3a	80	59.409	Oryzias_melastigma
MGP_PahariEiJ_G0021311	Upf3a	91	69.018	ENSOGAG00000004788	UPF3A	96	69.018	Otolemur_garnettii
MGP_PahariEiJ_G0021311	Upf3a	87	68.930	ENSOARG00000009004	UPF3A	83	67.929	Ovis_aries
MGP_PahariEiJ_G0021311	Upf3a	55	53.191	ENSOARG00000007869	-	57	48.163	Ovis_aries
MGP_PahariEiJ_G0021311	Upf3a	99	68.822	ENSPPAG00000042267	UPF3A	87	68.675	Pan_paniscus
MGP_PahariEiJ_G0021311	Upf3a	95	68.750	ENSPPRG00000025062	UPF3A	87	68.750	Panthera_pardus
MGP_PahariEiJ_G0021311	Upf3a	84	57.967	ENSPTRG00000041187	-	81	56.983	Pan_troglodytes
MGP_PahariEiJ_G0021311	Upf3a	84	57.746	ENSPTRG00000041835	-	81	57.746	Pan_troglodytes
MGP_PahariEiJ_G0021311	Upf3a	89	54.780	ENSPTRG00000051640	-	86	54.897	Pan_troglodytes
MGP_PahariEiJ_G0021311	Upf3a	99	69.425	ENSPTRG00000006073	UPF3A	87	68.750	Pan_troglodytes
MGP_PahariEiJ_G0021311	Upf3a	99	70.353	ENSPANG00000004346	UPF3A	87	69.951	Papio_anubis
MGP_PahariEiJ_G0021311	Upf3a	56	63.454	ENSPKIG00000019226	upf3b	75	68.376	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0021311	Upf3a	84	67.575	ENSPSIG00000007468	UPF3A	89	67.575	Pelodiscus_sinensis
MGP_PahariEiJ_G0021311	Upf3a	99	85.308	ENSPEMG00000019968	-	99	85.308	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0021311	Upf3a	77	72.766	ENSPCIG00000019590	-	79	77.901	Phascolarctos_cinereus
MGP_PahariEiJ_G0021311	Upf3a	86	45.953	ENSPCIG00000028914	UPF3B	80	46.292	Phascolarctos_cinereus
MGP_PahariEiJ_G0021311	Upf3a	87	62.097	ENSPFOG00000013222	upf3a	80	62.097	Poecilia_formosa
MGP_PahariEiJ_G0021311	Upf3a	87	60.800	ENSPLAG00000011960	upf3a	81	60.800	Poecilia_latipinna
MGP_PahariEiJ_G0021311	Upf3a	87	61.702	ENSPMEG00000000836	upf3a	77	61.702	Poecilia_mexicana
MGP_PahariEiJ_G0021311	Upf3a	99	69.585	ENSPPYG00000005536	UPF3A	87	69.157	Pongo_abelii
MGP_PahariEiJ_G0021311	Upf3a	75	63.526	ENSPCAG00000013124	UPF3A	65	64.078	Procavia_capensis
MGP_PahariEiJ_G0021311	Upf3a	99	64.384	ENSPVAG00000005656	UPF3A	87	65.217	Pteropus_vampyrus
MGP_PahariEiJ_G0021311	Upf3a	88	59.416	ENSPNYG00000011289	upf3a	79	60.938	Pundamilia_nyererei
MGP_PahariEiJ_G0021311	Upf3a	55	64.463	ENSPNAG00000021528	upf3b	72	66.968	Pygocentrus_nattereri
MGP_PahariEiJ_G0021311	Upf3a	88	59.733	ENSPNAG00000019532	upf3a	82	59.733	Pygocentrus_nattereri
MGP_PahariEiJ_G0021311	Upf3a	94	89.620	ENSRNOG00000017397	Upf3a	97	89.620	Rattus_norvegicus
MGP_PahariEiJ_G0021311	Upf3a	86	72.011	ENSRBIG00000034007	UPF3A	86	70.419	Rhinopithecus_bieti
MGP_PahariEiJ_G0021311	Upf3a	84	72.753	ENSRROG00000012212	UPF3A	76	72.753	Rhinopithecus_roxellana
MGP_PahariEiJ_G0021311	Upf3a	99	60.138	ENSSBOG00000029989	UPF3A	86	59.518	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0021311	Upf3a	86	68.519	ENSSHAG00000009895	UPF3A	90	68.170	Sarcophilus_harrisii
MGP_PahariEiJ_G0021311	Upf3a	84	50.259	ENSSHAG00000008634	UPF3B	79	50.000	Sarcophilus_harrisii
MGP_PahariEiJ_G0021311	Upf3a	58	65.234	ENSSFOG00015005614	upf3b	57	64.231	Scleropages_formosus
MGP_PahariEiJ_G0021311	Upf3a	87	58.311	ENSSFOG00015021851	upf3a	80	58.311	Scleropages_formosus
MGP_PahariEiJ_G0021311	Upf3a	57	62.948	ENSSMAG00000012913	upf3b	69	67.442	Scophthalmus_maximus
MGP_PahariEiJ_G0021311	Upf3a	85	59.229	ENSSMAG00000003858	upf3a	79	72.650	Scophthalmus_maximus
MGP_PahariEiJ_G0021311	Upf3a	92	56.962	ENSSDUG00000009680	upf3a	80	59.494	Seriola_dumerili
MGP_PahariEiJ_G0021311	Upf3a	92	57.107	ENSSLDG00000009700	upf3a	82	59.645	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0021311	Upf3a	84	59.178	ENSSARG00000007262	UPF3A	89	55.616	Sorex_araneus
MGP_PahariEiJ_G0021311	Upf3a	87	50.674	ENSSPAG00000007938	upf3a	74	79.503	Stegastes_partitus
MGP_PahariEiJ_G0021311	Upf3a	55	63.636	ENSSPAG00000009989	upf3b	54	63.600	Stegastes_partitus
MGP_PahariEiJ_G0021311	Upf3a	99	66.667	ENSSSCG00000024679	UPF3A	83	67.067	Sus_scrofa
MGP_PahariEiJ_G0021311	Upf3a	86	68.421	ENSTGUG00000009493	UPF3A	96	68.421	Taeniopygia_guttata
MGP_PahariEiJ_G0021311	Upf3a	89	58.639	ENSTRUG00000012730	upf3a	82	58.639	Takifugu_rubripes
MGP_PahariEiJ_G0021311	Upf3a	87	50.404	ENSTNIG00000014973	upf3a	95	50.785	Tetraodon_nigroviridis
MGP_PahariEiJ_G0021311	Upf3a	68	62.542	ENSTBEG00000017186	-	95	62.542	Tupaia_belangeri
MGP_PahariEiJ_G0021311	Upf3a	99	57.931	ENSTTRG00000015414	UPF3A	87	58.173	Tursiops_truncatus
MGP_PahariEiJ_G0021311	Upf3a	84	68.665	ENSVPAG00000003525	UPF3A	89	68.665	Vicugna_pacos
MGP_PahariEiJ_G0021311	Upf3a	99	67.356	ENSVVUG00000013538	UPF3A	84	68.106	Vulpes_vulpes
MGP_PahariEiJ_G0021311	Upf3a	86	56.793	ENSXETG00000002572	upf3a	87	56.793	Xenopus_tropicalis
MGP_PahariEiJ_G0021311	Upf3a	85	45.550	ENSXETG00000007440	upf3b	71	69.512	Xenopus_tropicalis
MGP_PahariEiJ_G0021311	Upf3a	87	61.333	ENSXMAG00000013452	upf3a	80	61.333	Xiphophorus_maculatus