EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0022440 (Gene tree)
Gene ID: 110316581
Gene Symbol: Shq1
Alias: 2810403P18Rik|Grim-1
Full Name: SHQ1%2C H/ACA ribonucleoprotein assembly factor
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 102262 bases
Position: chr2:117311559-117413820
Accession: 110316581
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0051416	SHQ1	PF04925.15	2.2e-69	1	1
MGP_PahariEiJ_P0051417	SHQ1	PF04925.15	2.2e-69	1	1
MGP_PahariEiJ_P0051418	SHQ1	PF04925.15	6.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0051418	-	1639	XM_021190984	MGP_PahariEiJ_P0051418	458 (aa)	XP_021046643	UPI000A30D21C
MGP_PahariEiJ_T0051419	-	754	-	-	- (aa)	-	-
MGP_PahariEiJ_T0051416	-	6039	-	MGP_PahariEiJ_P0051416	569 (aa)	XP_021046642	UPI000A30BA56
MGP_PahariEiJ_T0051417	-	1991	-	MGP_PahariEiJ_P0051417	569 (aa)	XP_021046642	UPI000A30BA56

Gene Model

Click here to download MGP_PahariEiJ_G0022440's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0022440's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0022440	Shq1	98	84.836	ENSG00000144736	SHQ1	100	82.000	Homo_sapiens
MGP_PahariEiJ_G0022440	Shq1	71	67.500	ENSAPOG00000000397	shq1	70	61.556	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0022440	Shq1	100	86.475	ENSAMEG00000015140	SHQ1	100	75.952	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0022440	Shq1	76	61.609	ENSACIG00000021249	shq1	74	60.000	Amphilophus_citrinellus
MGP_PahariEiJ_G0022440	Shq1	76	62.700	ENSAOCG00000023311	shq1	70	62.700	Amphiprion_ocellaris
MGP_PahariEiJ_G0022440	Shq1	71	67.500	ENSAPEG00000021686	shq1	70	62.471	Amphiprion_percula
MGP_PahariEiJ_G0022440	Shq1	76	62.243	ENSATEG00000008475	shq1	71	61.098	Anabas_testudineus
MGP_PahariEiJ_G0022440	Shq1	86	68.033	ENSAPLG00000013926	SHQ1	100	63.261	Anas_platyrhynchos
MGP_PahariEiJ_G0022440	Shq1	99	66.122	ENSACAG00000014809	SHQ1	85	60.764	Anolis_carolinensis
MGP_PahariEiJ_G0022440	Shq1	98	82.787	ENSANAG00000029241	SHQ1	98	76.896	Aotus_nancymaae
MGP_PahariEiJ_G0022440	Shq1	96	59.025	ENSANAG00000030500	-	98	56.708	Aotus_nancymaae
MGP_PahariEiJ_G0022440	Shq1	78	58.296	ENSACLG00000023077	shq1	75	54.451	Astatotilapia_calliptera
MGP_PahariEiJ_G0022440	Shq1	76	55.889	ENSAMXG00000043822	shq1	78	55.142	Astyanax_mexicanus
MGP_PahariEiJ_G0022440	Shq1	100	83.197	ENSBTAG00000005436	SHQ1	100	74.828	Bos_taurus
MGP_PahariEiJ_G0022440	Shq1	76	33.634	WBGene00021655	Y48A5A.1	97	33.860	Caenorhabditis_elegans
MGP_PahariEiJ_G0022440	Shq1	97	82.787	ENSCJAG00000015131	SHQ1	98	75.575	Callithrix_jacchus
MGP_PahariEiJ_G0022440	Shq1	100	85.656	ENSCAFG00000006434	SHQ1	99	75.779	Canis_familiaris
MGP_PahariEiJ_G0022440	Shq1	100	85.656	ENSCAFG00020016743	SHQ1	99	75.779	Canis_lupus_dingo
MGP_PahariEiJ_G0022440	Shq1	100	82.787	ENSCHIG00000012271	SHQ1	91	75.172	Capra_hircus
MGP_PahariEiJ_G0022440	Shq1	99	74.403	ENSTSYG00000014439	SHQ1	99	72.456	Carlito_syrichta
MGP_PahariEiJ_G0022440	Shq1	90	65.962	ENSCAPG00000009343	SHQ1	96	89.610	Cavia_aperea
MGP_PahariEiJ_G0022440	Shq1	98	84.426	ENSCPOG00000011443	SHQ1	99	73.891	Cavia_porcellus
MGP_PahariEiJ_G0022440	Shq1	98	65.674	ENSCCAG00000027080	SHQ1	98	65.608	Cebus_capucinus
MGP_PahariEiJ_G0022440	Shq1	95	60.793	ENSCCAG00000036087	-	97	57.321	Cebus_capucinus
MGP_PahariEiJ_G0022440	Shq1	100	83.607	ENSCATG00000041238	SHQ1	100	74.138	Cercocebus_atys
MGP_PahariEiJ_G0022440	Shq1	98	84.836	ENSCLAG00000004206	SHQ1	99	73.958	Chinchilla_lanigera
MGP_PahariEiJ_G0022440	Shq1	81	78.065	ENSCSAG00000011514	SHQ1	100	70.672	Chlorocebus_sabaeus
MGP_PahariEiJ_G0022440	Shq1	61	71.014	ENSCHOG00000003273	-	100	71.014	Choloepus_hoffmanni
MGP_PahariEiJ_G0022440	Shq1	93	71.064	ENSCPBG00000006441	SHQ1	90	63.357	Chrysemys_picta_bellii
MGP_PahariEiJ_G0022440	Shq1	68	50.000	ENSCING00000008013	-	95	41.458	Ciona_intestinalis
MGP_PahariEiJ_G0022440	Shq1	62	62.791	ENSCSAVG00000002332	-	98	40.179	Ciona_savignyi
MGP_PahariEiJ_G0022440	Shq1	99	83.607	ENSCANG00000039295	SHQ1	100	74.216	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0022440	Shq1	100	93.443	ENSCGRG00001012583	Shq1	100	93.443	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0022440	Shq1	100	93.443	ENSCGRG00000009849	Shq1	100	93.443	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0022440	Shq1	73	62.291	ENSCSEG00000007829	shq1	72	61.454	Cynoglossus_semilaevis
MGP_PahariEiJ_G0022440	Shq1	76	61.098	ENSCVAG00000020049	shq1	92	52.285	Cyprinodon_variegatus
MGP_PahariEiJ_G0022440	Shq1	76	59.954	ENSDARG00000058522	shq1	73	60.183	Danio_rerio
MGP_PahariEiJ_G0022440	Shq1	100	85.656	ENSDNOG00000033937	SHQ1	100	74.003	Dasypus_novemcinctus
MGP_PahariEiJ_G0022440	Shq1	96	84.158	ENSETEG00000005766	SHQ1	99	65.331	Echinops_telfairi
MGP_PahariEiJ_G0022440	Shq1	69	57.463	ENSEBUG00000005445	shq1	99	44.444	Eptatretus_burgeri
MGP_PahariEiJ_G0022440	Shq1	100	85.246	ENSEASG00005002237	SHQ1	100	76.817	Equus_asinus_asinus
MGP_PahariEiJ_G0022440	Shq1	97	85.656	ENSECAG00000015673	SHQ1	95	77.580	Equus_caballus
MGP_PahariEiJ_G0022440	Shq1	100	80.328	ENSEEUG00000010568	SHQ1	100	73.356	Erinaceus_europaeus
MGP_PahariEiJ_G0022440	Shq1	73	61.836	ENSELUG00000003476	shq1	81	59.278	Esox_lucius
MGP_PahariEiJ_G0022440	Shq1	100	86.475	ENSFCAG00000012781	SHQ1	100	77.217	Felis_catus
MGP_PahariEiJ_G0022440	Shq1	98	71.311	ENSFALG00000013428	SHQ1	93	60.946	Ficedula_albicollis
MGP_PahariEiJ_G0022440	Shq1	98	84.426	ENSFDAG00000005595	SHQ1	91	70.826	Fukomys_damarensis
MGP_PahariEiJ_G0022440	Shq1	76	61.048	ENSFHEG00000017552	shq1	76	57.802	Fundulus_heteroclitus
MGP_PahariEiJ_G0022440	Shq1	57	73.171	ENSGMOG00000007350	shq1	100	59.045	Gadus_morhua
MGP_PahariEiJ_G0022440	Shq1	98	71.130	ENSGALG00000007798	SHQ1	94	59.686	Gallus_gallus
MGP_PahariEiJ_G0022440	Shq1	57	75.610	ENSGACG00000011797	shq1	100	60.705	Gasterosteus_aculeatus
MGP_PahariEiJ_G0022440	Shq1	98	84.426	ENSGGOG00000034818	SHQ1	98	74.737	Gorilla_gorilla
MGP_PahariEiJ_G0022440	Shq1	78	58.072	ENSHBUG00000010857	shq1	74	57.709	Haplochromis_burtoni
MGP_PahariEiJ_G0022440	Shq1	98	84.836	ENSHGLG00000003637	SHQ1	91	73.129	Heterocephalus_glaber_female
MGP_PahariEiJ_G0022440	Shq1	98	84.836	ENSHGLG00100011957	SHQ1	91	73.379	Heterocephalus_glaber_male
MGP_PahariEiJ_G0022440	Shq1	95	51.673	ENSHCOG00000010799	shq1	90	52.045	Hippocampus_comes
MGP_PahariEiJ_G0022440	Shq1	76	59.955	ENSIPUG00000001247	shq1	74	59.955	Ictalurus_punctatus
MGP_PahariEiJ_G0022440	Shq1	98	83.197	ENSSTOG00000010043	SHQ1	100	73.097	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0022440	Shq1	98	87.295	ENSJJAG00000017611	Shq1	98	87.295	Jaculus_jaculus
MGP_PahariEiJ_G0022440	Shq1	76	61.731	ENSKMAG00000004457	shq1	95	51.300	Kryptolebias_marmoratus
MGP_PahariEiJ_G0022440	Shq1	99	65.863	ENSLACG00000014243	SHQ1	87	56.752	Latimeria_chalumnae
MGP_PahariEiJ_G0022440	Shq1	92	64.317	ENSLOCG00000009970	shq1	97	56.128	Lepisosteus_oculatus
MGP_PahariEiJ_G0022440	Shq1	100	84.016	ENSMFAG00000039148	SHQ1	100	74.310	Macaca_fascicularis
MGP_PahariEiJ_G0022440	Shq1	98	56.360	ENSMFAG00000037396	-	98	54.321	Macaca_fascicularis
MGP_PahariEiJ_G0022440	Shq1	98	56.007	ENSMMUG00000021761	-	98	53.968	Macaca_mulatta
MGP_PahariEiJ_G0022440	Shq1	90	83.163	ENSMMUG00000009571	SHQ1	96	73.120	Macaca_mulatta
MGP_PahariEiJ_G0022440	Shq1	100	84.016	ENSMNEG00000032667	SHQ1	100	74.310	Macaca_nemestrina
MGP_PahariEiJ_G0022440	Shq1	100	83.607	ENSMLEG00000038493	SHQ1	100	74.310	Mandrillus_leucophaeus
MGP_PahariEiJ_G0022440	Shq1	80	60.307	ENSMAMG00000023432	shq1	70	59.649	Mastacembelus_armatus
MGP_PahariEiJ_G0022440	Shq1	78	58.296	ENSMZEG00005008649	shq1	74	57.930	Maylandia_zebra
MGP_PahariEiJ_G0022440	Shq1	98	69.710	ENSMGAG00000009640	SHQ1	94	58.596	Meleagris_gallopavo
MGP_PahariEiJ_G0022440	Shq1	100	93.033	ENSMAUG00000022030	Shq1	100	93.033	Mesocricetus_auratus
MGP_PahariEiJ_G0022440	Shq1	98	84.898	ENSMICG00000009224	SHQ1	98	74.306	Microcebus_murinus
MGP_PahariEiJ_G0022440	Shq1	100	92.623	ENSMOCG00000017836	Shq1	100	92.623	Microtus_ochrogaster
MGP_PahariEiJ_G0022440	Shq1	76	60.000	ENSMMOG00000010569	shq1	77	56.987	Mola_mola
MGP_PahariEiJ_G0022440	Shq1	96	68.443	ENSMODG00000003926	SHQ1	78	72.540	Monodelphis_domestica
MGP_PahariEiJ_G0022440	Shq1	97	54.336	ENSMALG00000008870	shq1	73	61.036	Monopterus_albus
MGP_PahariEiJ_G0022440	Shq1	100	95.902	MGP_CAROLIEiJ_G0028689	Shq1	100	95.902	Mus_caroli
MGP_PahariEiJ_G0022440	Shq1	100	95.902	ENSMUSG00000035378	Shq1	100	95.902	Mus_musculus
MGP_PahariEiJ_G0022440	Shq1	100	96.311	MGP_SPRETEiJ_G0029717	Shq1	100	96.311	Mus_spretus
MGP_PahariEiJ_G0022440	Shq1	100	84.016	ENSMPUG00000017006	SHQ1	96	75.838	Mustela_putorius_furo
MGP_PahariEiJ_G0022440	Shq1	90	70.802	ENSMLUG00000013539	SHQ1	98	70.420	Myotis_lucifugus
MGP_PahariEiJ_G0022440	Shq1	98	75.177	ENSNGAG00000023317	Shq1	100	73.404	Nannospalax_galili
MGP_PahariEiJ_G0022440	Shq1	62	56.583	ENSNBRG00000024004	shq1	70	55.858	Neolamprologus_brichardi
MGP_PahariEiJ_G0022440	Shq1	98	85.656	ENSNLEG00000002731	SHQ1	98	75.747	Nomascus_leucogenys
MGP_PahariEiJ_G0022440	Shq1	83	63.889	ENSMEUG00000009350	-	90	63.889	Notamacropus_eugenii
MGP_PahariEiJ_G0022440	Shq1	99	70.588	ENSODEG00000009192	SHQ1	99	83.058	Octodon_degus
MGP_PahariEiJ_G0022440	Shq1	78	57.848	ENSONIG00000020264	shq1	74	57.489	Oreochromis_niloticus
MGP_PahariEiJ_G0022440	Shq1	99	83.539	ENSOCUG00000016695	SHQ1	90	83.539	Oryctolagus_cuniculus
MGP_PahariEiJ_G0022440	Shq1	76	60.185	ENSORLG00000023538	shq1	80	58.482	Oryzias_latipes
MGP_PahariEiJ_G0022440	Shq1	76	60.880	ENSORLG00020003697	shq1	79	59.152	Oryzias_latipes_hni
MGP_PahariEiJ_G0022440	Shq1	76	60.880	ENSORLG00015021040	shq1	78	60.183	Oryzias_latipes_hsok
MGP_PahariEiJ_G0022440	Shq1	76	61.574	ENSOMEG00000001225	shq1	81	58.862	Oryzias_melastigma
MGP_PahariEiJ_G0022440	Shq1	98	84.615	ENSOGAG00000003898	SHQ1	100	75.567	Otolemur_garnettii
MGP_PahariEiJ_G0022440	Shq1	99	81.707	ENSOARG00000009547	SHQ1	99	74.266	Ovis_aries
MGP_PahariEiJ_G0022440	Shq1	98	85.246	ENSPPAG00000027714	SHQ1	98	75.088	Pan_paniscus
MGP_PahariEiJ_G0022440	Shq1	98	58.464	ENSPPAG00000043263	-	98	55.712	Pan_paniscus
MGP_PahariEiJ_G0022440	Shq1	100	86.475	ENSPPRG00000004769	SHQ1	100	77.069	Panthera_pardus
MGP_PahariEiJ_G0022440	Shq1	100	79.060	ENSPTIG00000011478	SHQ1	100	72.586	Panthera_tigris_altaica
MGP_PahariEiJ_G0022440	Shq1	98	57.766	ENSPTRG00000048303	-	98	54.657	Pan_troglodytes
MGP_PahariEiJ_G0022440	Shq1	98	85.246	ENSPTRG00000015106	SHQ1	98	75.088	Pan_troglodytes
MGP_PahariEiJ_G0022440	Shq1	100	82.787	ENSPANG00000002881	SHQ1	100	74.828	Papio_anubis
MGP_PahariEiJ_G0022440	Shq1	98	55.600	ENSPKIG00000021517	shq1	76	57.466	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0022440	Shq1	97	69.456	ENSPSIG00000005536	SHQ1	93	62.456	Pelodiscus_sinensis
MGP_PahariEiJ_G0022440	Shq1	77	58.314	ENSPMGG00000008838	shq1	73	58.219	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0022440	Shq1	100	93.033	ENSPEMG00000000251	Shq1	100	93.033	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0022440	Shq1	77	56.600	ENSPMAG00000005372	shq1	99	56.823	Petromyzon_marinus
MGP_PahariEiJ_G0022440	Shq1	76	59.453	ENSPFOG00000003118	shq1	82	58.022	Poecilia_formosa
MGP_PahariEiJ_G0022440	Shq1	61	58.046	ENSPMEG00000011076	shq1	79	56.319	Poecilia_mexicana
MGP_PahariEiJ_G0022440	Shq1	68	58.031	ENSPREG00000000591	shq1	76	56.650	Poecilia_reticulata
MGP_PahariEiJ_G0022440	Shq1	98	84.016	ENSPPYG00000013717	SHQ1	99	74.567	Pongo_abelii
MGP_PahariEiJ_G0022440	Shq1	95	84.426	ENSPCAG00000009035	SHQ1	99	74.603	Procavia_capensis
MGP_PahariEiJ_G0022440	Shq1	98	84.211	ENSPCOG00000008415	SHQ1	99	74.913	Propithecus_coquereli
MGP_PahariEiJ_G0022440	Shq1	98	83.607	ENSPVAG00000017392	SHQ1	99	77.113	Pteropus_vampyrus
MGP_PahariEiJ_G0022440	Shq1	78	58.296	ENSPNYG00000003878	shq1	73	58.370	Pundamilia_nyererei
MGP_PahariEiJ_G0022440	Shq1	76	60.138	ENSPNAG00000026840	shq1	73	59.020	Pygocentrus_nattereri
MGP_PahariEiJ_G0022440	Shq1	100	95.902	ENSRNOG00000005433	Shq1	91	95.902	Rattus_norvegicus
MGP_PahariEiJ_G0022440	Shq1	99	78.000	ENSRBIG00000026280	SHQ1	100	70.957	Rhinopithecus_bieti
MGP_PahariEiJ_G0022440	Shq1	99	83.607	ENSRROG00000034126	SHQ1	100	74.042	Rhinopithecus_roxellana
MGP_PahariEiJ_G0022440	Shq1	97	68.366	ENSSBOG00000021038	SHQ1	98	67.788	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0022440	Shq1	93	72.500	ENSSHAG00000015077	SHQ1	98	62.950	Sarcophilus_harrisii
MGP_PahariEiJ_G0022440	Shq1	77	62.754	ENSSMAG00000016151	shq1	72	62.077	Scophthalmus_maximus
MGP_PahariEiJ_G0022440	Shq1	73	62.110	ENSSDUG00000011986	shq1	72	61.419	Seriola_dumerili
MGP_PahariEiJ_G0022440	Shq1	73	61.836	ENSSLDG00000013908	shq1	72	61.384	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0022440	Shq1	98	68.350	ENSSARG00000007119	SHQ1	98	59.123	Sorex_araneus
MGP_PahariEiJ_G0022440	Shq1	78	69.935	ENSSPUG00000011526	-	90	59.751	Sphenodon_punctatus
MGP_PahariEiJ_G0022440	Shq1	99	81.557	ENSSSCG00000011518	SHQ1	99	73.438	Sus_scrofa
MGP_PahariEiJ_G0022440	Shq1	98	65.568	ENSTGUG00000009933	SHQ1	100	59.552	Taeniopygia_guttata
MGP_PahariEiJ_G0022440	Shq1	66	66.176	ENSTRUG00000009446	shq1	75	58.352	Takifugu_rubripes
MGP_PahariEiJ_G0022440	Shq1	73	56.971	ENSTNIG00000007354	shq1	98	55.921	Tetraodon_nigroviridis
MGP_PahariEiJ_G0022440	Shq1	72	87.234	ENSTBEG00000011295	SHQ1	78	87.234	Tupaia_belangeri
MGP_PahariEiJ_G0022440	Shq1	97	84.426	ENSTTRG00000005320	SHQ1	98	76.064	Tursiops_truncatus
MGP_PahariEiJ_G0022440	Shq1	98	86.087	ENSUMAG00000024031	SHQ1	98	74.205	Ursus_maritimus
MGP_PahariEiJ_G0022440	Shq1	92	63.977	ENSVPAG00000004880	SHQ1	100	63.790	Vicugna_pacos
MGP_PahariEiJ_G0022440	Shq1	100	85.656	ENSVVUG00000013906	SHQ1	99	75.779	Vulpes_vulpes
MGP_PahariEiJ_G0022440	Shq1	78	65.315	ENSXETG00000032215	shq1	71	65.682	Xenopus_tropicalis