EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0022476 (Gene tree)
Gene ID: 110316598
Gene Symbol: Rpusd3
Alias: -
Full Name: RNA pseudouridine synthase D3
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 3976 bases
Position: chr2:129154264-129158239
Accession: 110316598
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0051619	PseudoU_synth_2	PF00849.22	8.3e-19	1	1
MGP_PahariEiJ_P0051618	PseudoU_synth_2	PF00849.22	1.1e-18	1	1
MGP_PahariEiJ_P0051616	PseudoU_synth_2	PF00849.22	1.6e-18	1	1
MGP_PahariEiJ_P0051621	PseudoU_synth_2	PF00849.22	5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0051624	-	773	-	-	- (aa)	-	-
MGP_PahariEiJ_T0051623	-	365	-	MGP_PahariEiJ_P0051623	117 (aa)	-	-
MGP_PahariEiJ_T0051622	-	524	-	-	- (aa)	-	-
MGP_PahariEiJ_T0051621	-	549	-	MGP_PahariEiJ_P0051621	182 (aa)	-	-
MGP_PahariEiJ_T0051620	-	782	-	-	- (aa)	-	-
MGP_PahariEiJ_T0051618	-	1049	-	MGP_PahariEiJ_P0051618	316 (aa)	-	-
MGP_PahariEiJ_T0051619	-	805	-	MGP_PahariEiJ_P0051619	268 (aa)	-	-
MGP_PahariEiJ_T0051616	-	1228	XM_021191004	MGP_PahariEiJ_P0051616	344 (aa)	XP_021046663	UPI000A30B0D3
MGP_PahariEiJ_T0051617	-	321	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0022476's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0022476's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0022476	Rpusd3	76	35.401	MGP_PahariEiJ_G0014819	Rpusd4	68	35.401

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0022476	Rpusd3	100	73.256	ENSG00000156990	RPUSD3	98	73.256	Homo_sapiens
MGP_PahariEiJ_G0022476	Rpusd3	100	71.802	ENSAMEG00000016227	RPUSD3	98	71.802	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0022476	Rpusd3	81	55.046	ENSACAG00000009836	RPUSD3	80	54.093	Anolis_carolinensis
MGP_PahariEiJ_G0022476	Rpusd3	92	51.128	ENSANAG00000007127	-	96	50.990	Aotus_nancymaae
MGP_PahariEiJ_G0022476	Rpusd3	70	75.000	ENSANAG00000019945	-	75	75.000	Aotus_nancymaae
MGP_PahariEiJ_G0022476	Rpusd3	70	72.193	ENSANAG00000038118	-	89	72.193	Aotus_nancymaae
MGP_PahariEiJ_G0022476	Rpusd3	100	72.674	ENSBTAG00000007968	RPUSD3	100	72.674	Bos_taurus
MGP_PahariEiJ_G0022476	Rpusd3	100	70.640	ENSCAFG00000029733	RPUSD3	98	70.640	Canis_familiaris
MGP_PahariEiJ_G0022476	Rpusd3	100	70.640	ENSCAFG00020008582	RPUSD3	98	70.640	Canis_lupus_dingo
MGP_PahariEiJ_G0022476	Rpusd3	100	71.221	ENSCHIG00000026027	RPUSD3	100	71.221	Capra_hircus
MGP_PahariEiJ_G0022476	Rpusd3	96	69.254	ENSTSYG00000009994	RPUSD3	95	69.254	Carlito_syrichta
MGP_PahariEiJ_G0022476	Rpusd3	74	77.889	ENSCAPG00000017559	RPUSD3	99	74.905	Cavia_aperea
MGP_PahariEiJ_G0022476	Rpusd3	96	67.442	ENSCPOG00000037956	RPUSD3	81	71.626	Cavia_porcellus
MGP_PahariEiJ_G0022476	Rpusd3	98	72.997	ENSCCAG00000029530	RPUSD3	97	72.997	Cebus_capucinus
MGP_PahariEiJ_G0022476	Rpusd3	100	73.547	ENSCATG00000036939	RPUSD3	98	73.547	Cercocebus_atys
MGP_PahariEiJ_G0022476	Rpusd3	100	73.256	ENSCSAG00000010506	RPUSD3	98	73.256	Chlorocebus_sabaeus
MGP_PahariEiJ_G0022476	Rpusd3	51	77.679	ENSCHOG00000010151	-	67	77.679	Choloepus_hoffmanni
MGP_PahariEiJ_G0022476	Rpusd3	72	54.872	ENSCPBG00000008825	RPUSD3	95	52.529	Chrysemys_picta_bellii
MGP_PahariEiJ_G0022476	Rpusd3	100	72.674	ENSCANG00000040711	RPUSD3	98	72.674	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0022476	Rpusd3	100	84.884	ENSCGRG00001004923	Rpusd3	95	84.884	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0022476	Rpusd3	100	84.884	ENSCGRG00000018315	Rpusd3	100	84.884	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0022476	Rpusd3	97	72.072	ENSDNOG00000039160	RPUSD3	88	72.072	Dasypus_novemcinctus
MGP_PahariEiJ_G0022476	Rpusd3	76	73.034	ENSDORG00000026827	Rpusd3	92	73.034	Dipodomys_ordii
MGP_PahariEiJ_G0022476	Rpusd3	97	68.657	ENSETEG00000006538	RPUSD3	95	68.657	Echinops_telfairi
MGP_PahariEiJ_G0022476	Rpusd3	81	32.353	ENSEBUG00000015605	RPUSD3	88	32.353	Eptatretus_burgeri
MGP_PahariEiJ_G0022476	Rpusd3	100	72.965	ENSEASG00005014160	RPUSD3	96	72.965	Equus_asinus_asinus
MGP_PahariEiJ_G0022476	Rpusd3	100	74.128	ENSECAG00000019988	RPUSD3	96	74.128	Equus_caballus
MGP_PahariEiJ_G0022476	Rpusd3	95	56.156	ENSEEUG00000007353	RPUSD3	94	56.156	Erinaceus_europaeus
MGP_PahariEiJ_G0022476	Rpusd3	100	71.802	ENSFCAG00000014199	RPUSD3	98	71.802	Felis_catus
MGP_PahariEiJ_G0022476	Rpusd3	80	49.097	ENSFALG00000012968	RPUSD3	100	49.097	Ficedula_albicollis
MGP_PahariEiJ_G0022476	Rpusd3	75	77.114	ENSFDAG00000008350	RPUSD3	82	74.340	Fukomys_damarensis
MGP_PahariEiJ_G0022476	Rpusd3	75	55.721	ENSGAGG00000007493	RPUSD3	82	53.232	Gopherus_agassizii
MGP_PahariEiJ_G0022476	Rpusd3	100	73.547	ENSGGOG00000013120	RPUSD3	98	73.547	Gorilla_gorilla
MGP_PahariEiJ_G0022476	Rpusd3	81	76.037	ENSHGLG00000011722	RPUSD3	72	74.021	Heterocephalus_glaber_female
MGP_PahariEiJ_G0022476	Rpusd3	81	76.037	ENSHGLG00100016038	RPUSD3	72	74.021	Heterocephalus_glaber_male
MGP_PahariEiJ_G0022476	Rpusd3	100	71.884	ENSSTOG00000002125	RPUSD3	98	71.884	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0022476	Rpusd3	99	73.034	ENSJJAG00000012679	Rpusd3	100	71.802	Jaculus_jaculus
MGP_PahariEiJ_G0022476	Rpusd3	97	72.072	ENSLAFG00000017501	RPUSD3	97	72.072	Loxodonta_africana
MGP_PahariEiJ_G0022476	Rpusd3	100	72.965	ENSMFAG00000032407	RPUSD3	98	72.965	Macaca_fascicularis
MGP_PahariEiJ_G0022476	Rpusd3	95	74.016	ENSMMUG00000010628	RPUSD3	96	77.524	Macaca_mulatta
MGP_PahariEiJ_G0022476	Rpusd3	100	73.256	ENSMNEG00000040308	RPUSD3	98	73.256	Macaca_nemestrina
MGP_PahariEiJ_G0022476	Rpusd3	100	73.256	ENSMLEG00000033940	RPUSD3	98	73.256	Mandrillus_leucophaeus
MGP_PahariEiJ_G0022476	Rpusd3	100	85.174	ENSMAUG00000015473	Rpusd3	100	85.174	Mesocricetus_auratus
MGP_PahariEiJ_G0022476	Rpusd3	100	71.512	ENSMICG00000002315	RPUSD3	100	71.512	Microcebus_murinus
MGP_PahariEiJ_G0022476	Rpusd3	100	84.012	ENSMOCG00000022613	Rpusd3	100	84.012	Microtus_ochrogaster
MGP_PahariEiJ_G0022476	Rpusd3	90	57.851	ENSMODG00000005210	RPUSD3	79	57.143	Monodelphis_domestica
MGP_PahariEiJ_G0022476	Rpusd3	100	93.023	MGP_CAROLIEiJ_G0028725	Rpusd3	100	93.023	Mus_caroli
MGP_PahariEiJ_G0022476	Rpusd3	100	93.314	ENSMUSG00000051169	Rpusd3	100	93.314	Mus_musculus
MGP_PahariEiJ_G0022476	Rpusd3	100	93.314	MGP_SPRETEiJ_G0029753	Rpusd3	100	93.314	Mus_spretus
MGP_PahariEiJ_G0022476	Rpusd3	100	70.349	ENSMPUG00000017132	RPUSD3	98	70.349	Mustela_putorius_furo
MGP_PahariEiJ_G0022476	Rpusd3	100	73.988	ENSMLUG00000006135	RPUSD3	99	73.988	Myotis_lucifugus
MGP_PahariEiJ_G0022476	Rpusd3	99	76.023	ENSNGAG00000023704	Rpusd3	99	76.023	Nannospalax_galili
MGP_PahariEiJ_G0022476	Rpusd3	97	65.556	ENSNLEG00000004214	RPUSD3	92	75.127	Nomascus_leucogenys
MGP_PahariEiJ_G0022476	Rpusd3	74	65.829	ENSMEUG00000013098	-	100	62.835	Notamacropus_eugenii
MGP_PahariEiJ_G0022476	Rpusd3	96	58.308	ENSOPRG00000002300	RPUSD3	94	58.308	Ochotona_princeps
MGP_PahariEiJ_G0022476	Rpusd3	77	73.485	ENSODEG00000018137	RPUSD3	91	73.485	Octodon_degus
MGP_PahariEiJ_G0022476	Rpusd3	83	48.239	ENSOANG00000012081	-	99	48.239	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0022476	Rpusd3	100	60.114	ENSOCUG00000027885	RPUSD3	100	60.114	Oryctolagus_cuniculus
MGP_PahariEiJ_G0022476	Rpusd3	91	74.522	ENSOGAG00000012592	RPUSD3	100	74.522	Otolemur_garnettii
MGP_PahariEiJ_G0022476	Rpusd3	100	72.674	ENSOARG00000005928	RPUSD3	98	72.674	Ovis_aries
MGP_PahariEiJ_G0022476	Rpusd3	100	73.256	ENSPPAG00000038083	RPUSD3	98	73.256	Pan_paniscus
MGP_PahariEiJ_G0022476	Rpusd3	99	73.455	ENSPPRG00000024433	RPUSD3	98	72.093	Panthera_pardus
MGP_PahariEiJ_G0022476	Rpusd3	100	72.674	ENSPTIG00000006828	RPUSD3	100	72.674	Panthera_tigris_altaica
MGP_PahariEiJ_G0022476	Rpusd3	100	72.965	ENSPTRG00000051760	RPUSD3	98	72.965	Pan_troglodytes
MGP_PahariEiJ_G0022476	Rpusd3	100	73.547	ENSPANG00000023885	RPUSD3	98	73.547	Papio_anubis
MGP_PahariEiJ_G0022476	Rpusd3	100	84.302	ENSPEMG00000017245	Rpusd3	100	84.302	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0022476	Rpusd3	89	62.762	ENSPCIG00000021901	RPUSD3	86	59.801	Phascolarctos_cinereus
MGP_PahariEiJ_G0022476	Rpusd3	100	73.256	ENSPPYG00000013676	RPUSD3	98	73.256	Pongo_abelii
MGP_PahariEiJ_G0022476	Rpusd3	100	54.513	ENSPCAG00000013731	-	95	55.556	Procavia_capensis
MGP_PahariEiJ_G0022476	Rpusd3	96	77.039	ENSPCOG00000018314	RPUSD3	94	77.039	Propithecus_coquereli
MGP_PahariEiJ_G0022476	Rpusd3	100	72.674	ENSPVAG00000011107	RPUSD3	98	72.674	Pteropus_vampyrus
MGP_PahariEiJ_G0022476	Rpusd3	99	84.270	ENSRNOG00000009084	Rpusd3	100	83.140	Rattus_norvegicus
MGP_PahariEiJ_G0022476	Rpusd3	99	73.900	ENSRBIG00000041230	RPUSD3	97	73.900	Rhinopithecus_bieti
MGP_PahariEiJ_G0022476	Rpusd3	99	73.900	ENSRROG00000043328	RPUSD3	97	73.900	Rhinopithecus_roxellana
MGP_PahariEiJ_G0022476	Rpusd3	98	72.107	ENSSBOG00000036106	RPUSD3	97	72.107	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0022476	Rpusd3	92	58.130	ENSSHAG00000015536	RPUSD3	97	56.478	Sarcophilus_harrisii
MGP_PahariEiJ_G0022476	Rpusd3	100	71.512	ENSSSCG00000011555	RPUSD3	98	71.512	Sus_scrofa
MGP_PahariEiJ_G0022476	Rpusd3	73	50.256	ENSTGUG00000008744	RPUSD3	95	49.550	Taeniopygia_guttata
MGP_PahariEiJ_G0022476	Rpusd3	99	71.739	ENSTBEG00000000176	RPUSD3	97	72.954	Tupaia_belangeri
MGP_PahariEiJ_G0022476	Rpusd3	100	72.384	ENSTTRG00000007544	RPUSD3	98	72.384	Tursiops_truncatus
MGP_PahariEiJ_G0022476	Rpusd3	89	78.243	ENSUAMG00000011354	RPUSD3	94	76.898	Ursus_americanus
MGP_PahariEiJ_G0022476	Rpusd3	100	72.674	ENSUMAG00000018830	RPUSD3	98	72.674	Ursus_maritimus
MGP_PahariEiJ_G0022476	Rpusd3	100	71.802	ENSVVUG00000023735	RPUSD3	100	71.802	Vulpes_vulpes
MGP_PahariEiJ_G0022476	Rpusd3	80	49.767	ENSXETG00000023546	rpusd3	98	48.201	Xenopus_tropicalis