EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0022580 (Gene tree)
Gene ID: 110317250
Gene Symbol: -
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 26425 bases
Position: chr2:138149389-138175813
Accession: 110317250
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0052190	APOBEC_N	PF08210.11	6e-18	1	1
MGP_PahariEiJ_P0052191	APOBEC_N	PF08210.11	4.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0052189	-	1990	-	MGP_PahariEiJ_P0052189	229 (aa)	XP_021047341	UPI000A305D43
MGP_PahariEiJ_T0052194	-	325	-	MGP_PahariEiJ_P0052194	14 (aa)	-	-
MGP_PahariEiJ_T0052195	-	540	-	-	- (aa)	-	-
MGP_PahariEiJ_T0052190	-	663	-	MGP_PahariEiJ_P0052190	121 (aa)	-	-
MGP_PahariEiJ_T0052191	-	774	-	MGP_PahariEiJ_P0052191	113 (aa)	-	-
MGP_PahariEiJ_T0052192	-	369	-	MGP_PahariEiJ_P0052192	43 (aa)	-	-
MGP_PahariEiJ_T0052193	-	561	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0022580's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0022580's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0022580	-	73	30.108	MGP_PahariEiJ_G0020716	Apobec2	57	30.000
MGP_PahariEiJ_G0022580	-	56	38.235	MGP_PahariEiJ_G0022579	Aicda	53	40.566
MGP_PahariEiJ_G0022580	-	96	30.303	MGP_PahariEiJ_G0020031	-	75	30.233

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0022580	-	99	69.298	ENSG00000111701	APOBEC1	97	69.298	Homo_sapiens
MGP_PahariEiJ_G0022580	-	99	66.228	ENSAMEG00000007098	APOBEC1	97	66.228	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0022580	-	86	49.038	ENSACAG00000028578	-	93	43.529	Anolis_carolinensis
MGP_PahariEiJ_G0022580	-	99	67.982	ENSANAG00000027743	APOBEC1	92	67.982	Aotus_nancymaae
MGP_PahariEiJ_G0022580	-	99	67.105	ENSBTAG00000014683	APOBEC1	97	67.105	Bos_taurus
MGP_PahariEiJ_G0022580	-	93	67.606	ENSCJAG00000005398	APOBEC1	96	67.606	Callithrix_jacchus
MGP_PahariEiJ_G0022580	-	99	68.860	ENSCAFG00000013901	APOBEC1	97	68.860	Canis_familiaris
MGP_PahariEiJ_G0022580	-	95	68.349	ENSCAFG00020003511	APOBEC1	91	68.349	Canis_lupus_dingo
MGP_PahariEiJ_G0022580	-	99	65.789	ENSCHIG00000011898	APOBEC1	95	65.789	Capra_hircus
MGP_PahariEiJ_G0022580	-	94	71.698	ENSTSYG00000029141	APOBEC1	99	70.714	Carlito_syrichta
MGP_PahariEiJ_G0022580	-	93	61.972	ENSCAPG00000015882	-	99	61.972	Cavia_aperea
MGP_PahariEiJ_G0022580	-	99	61.667	ENSCPOG00000033068	APOBEC1	97	60.965	Cavia_porcellus
MGP_PahariEiJ_G0022580	-	99	68.421	ENSCCAG00000022258	APOBEC1	97	68.421	Cebus_capucinus
MGP_PahariEiJ_G0022580	-	99	69.298	ENSCATG00000021613	APOBEC1	92	69.298	Cercocebus_atys
MGP_PahariEiJ_G0022580	-	99	61.404	ENSCLAG00000014645	APOBEC1	99	61.404	Chinchilla_lanigera
MGP_PahariEiJ_G0022580	-	79	67.582	ENSCSAG00000009817	APOBEC1	95	67.582	Chlorocebus_sabaeus
MGP_PahariEiJ_G0022580	-	98	50.000	ENSCPBG00000014335	-	76	50.267	Chrysemys_picta_bellii
MGP_PahariEiJ_G0022580	-	86	48.571	ENSCPBG00000014331	-	84	42.857	Chrysemys_picta_bellii
MGP_PahariEiJ_G0022580	-	89	41.071	ENSCPBG00000017398	-	79	43.575	Chrysemys_picta_bellii
MGP_PahariEiJ_G0022580	-	95	40.517	ENSCPBG00000014327	-	83	38.318	Chrysemys_picta_bellii
MGP_PahariEiJ_G0022580	-	88	54.000	ENSCPBG00000014329	-	54	47.449	Chrysemys_picta_bellii
MGP_PahariEiJ_G0022580	-	86	45.714	ENSCPBG00000014328	-	89	42.365	Chrysemys_picta_bellii
MGP_PahariEiJ_G0022580	-	97	69.369	ENSCANG00000038359	APOBEC1	97	69.369	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0022580	-	100	82.645	ENSCGRG00001011130	Apobec1	99	82.018	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0022580	-	100	82.645	ENSCGRG00000008644	Apobec1	99	82.018	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0022580	-	100	70.248	ENSDNOG00000010926	APOBEC1	97	68.860	Dasypus_novemcinctus
MGP_PahariEiJ_G0022580	-	93	62.617	ENSDORG00000023717	Apobec1	100	62.617	Dipodomys_ordii
MGP_PahariEiJ_G0022580	-	99	66.812	ENSETEG00000004867	APOBEC1	97	66.812	Echinops_telfairi
MGP_PahariEiJ_G0022580	-	99	70.175	ENSEASG00005015951	APOBEC1	96	70.175	Equus_asinus_asinus
MGP_PahariEiJ_G0022580	-	79	70.000	ENSECAG00000017163	APOBEC1	94	70.000	Equus_caballus
MGP_PahariEiJ_G0022580	-	88	65.094	ENSEEUG00000007530	-	97	51.471	Erinaceus_europaeus
MGP_PahariEiJ_G0022580	-	88	66.355	ENSEEUG00000009112	-	92	63.285	Erinaceus_europaeus
MGP_PahariEiJ_G0022580	-	99	68.421	ENSFCAG00000009350	APOBEC1	97	68.421	Felis_catus
MGP_PahariEiJ_G0022580	-	87	50.476	ENSFALG00000007257	-	70	52.113	Ficedula_albicollis
MGP_PahariEiJ_G0022580	-	87	54.500	ENSFDAG00000018470	APOBEC1	96	54.500	Fukomys_damarensis
MGP_PahariEiJ_G0022580	-	88	51.402	ENSGAGG00000004947	-	94	46.316	Gopherus_agassizii
MGP_PahariEiJ_G0022580	-	86	41.905	ENSGAGG00000021744	-	75	42.632	Gopherus_agassizii
MGP_PahariEiJ_G0022580	-	96	39.316	ENSGAGG00000006624	-	66	42.623	Gopherus_agassizii
MGP_PahariEiJ_G0022580	-	90	50.909	ENSGAGG00000011837	-	87	55.085	Gopherus_agassizii
MGP_PahariEiJ_G0022580	-	86	42.857	ENSGAGG00000021745	-	64	43.103	Gopherus_agassizii
MGP_PahariEiJ_G0022580	-	99	60.833	ENSHGLG00000001495	APOBEC1	97	59.649	Heterocephalus_glaber_female
MGP_PahariEiJ_G0022580	-	99	59.167	ENSHGLG00100002187	APOBEC1	97	58.772	Heterocephalus_glaber_male
MGP_PahariEiJ_G0022580	-	88	67.925	ENSSTOG00000021971	APOBEC1	99	69.072	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0022580	-	99	68.421	ENSJJAG00000022108	Apobec1	99	68.421	Jaculus_jaculus
MGP_PahariEiJ_G0022580	-	94	68.837	ENSLAFG00000030837	APOBEC1	96	68.837	Loxodonta_africana
MGP_PahariEiJ_G0022580	-	99	69.298	ENSMFAG00000000277	APOBEC1	97	69.298	Macaca_fascicularis
MGP_PahariEiJ_G0022580	-	99	68.860	ENSMNEG00000029670	APOBEC1	97	68.860	Macaca_nemestrina
MGP_PahariEiJ_G0022580	-	99	69.298	ENSMLEG00000036301	APOBEC1	97	69.298	Mandrillus_leucophaeus
MGP_PahariEiJ_G0022580	-	97	78.281	ENSMAUG00000022167	Apobec1	99	78.281	Mesocricetus_auratus
MGP_PahariEiJ_G0022580	-	99	69.737	ENSMICG00000043645	APOBEC1	97	69.737	Microcebus_murinus
MGP_PahariEiJ_G0022580	-	100	82.301	ENSMOCG00000016170	-	100	82.301	Microtus_ochrogaster
MGP_PahariEiJ_G0022580	-	99	66.071	ENSMODG00000018004	APOBEC1	97	64.474	Monodelphis_domestica
MGP_PahariEiJ_G0022580	-	100	95.197	ENSMUSG00000040613	Apobec1	100	95.197	Mus_musculus
MGP_PahariEiJ_G0022580	-	100	95.197	MGP_SPRETEiJ_G0029857	Apobec1	100	95.197	Mus_spretus
MGP_PahariEiJ_G0022580	-	99	67.105	ENSMPUG00000017532	APOBEC1	97	67.105	Mustela_putorius_furo
MGP_PahariEiJ_G0022580	-	99	72.807	ENSNGAG00000022607	Apobec1	99	72.807	Nannospalax_galili
MGP_PahariEiJ_G0022580	-	99	67.982	ENSNLEG00000005342	APOBEC1	97	67.982	Nomascus_leucogenys
MGP_PahariEiJ_G0022580	-	100	62.832	ENSMEUG00000013406	APOBEC1	97	60.526	Notamacropus_eugenii
MGP_PahariEiJ_G0022580	-	95	60.000	ENSOPRG00000009508	-	100	58.011	Ochotona_princeps
MGP_PahariEiJ_G0022580	-	86	59.794	ENSODEG00000001157	-	99	59.794	Octodon_degus
MGP_PahariEiJ_G0022580	-	99	66.964	ENSOCUG00000025736	APOBEC1	85	66.667	Oryctolagus_cuniculus
MGP_PahariEiJ_G0022580	-	99	69.298	ENSOGAG00000026415	APOBEC1	97	69.298	Otolemur_garnettii
MGP_PahariEiJ_G0022580	-	99	65.789	ENSOARG00000002072	APOBEC1	95	65.789	Ovis_aries
MGP_PahariEiJ_G0022580	-	99	64.474	ENSPPAG00000027657	APOBEC1	96	64.474	Pan_paniscus
MGP_PahariEiJ_G0022580	-	99	68.860	ENSPPRG00000012182	APOBEC1	97	68.860	Panthera_pardus
MGP_PahariEiJ_G0022580	-	99	68.860	ENSPTIG00000020280	APOBEC1	97	68.860	Panthera_tigris_altaica
MGP_PahariEiJ_G0022580	-	99	68.860	ENSPTRG00000004614	APOBEC1	97	68.860	Pan_troglodytes
MGP_PahariEiJ_G0022580	-	99	69.737	ENSPANG00000021027	APOBEC1	97	69.737	Papio_anubis
MGP_PahariEiJ_G0022580	-	98	39.167	ENSPSIG00000012568	-	81	43.011	Pelodiscus_sinensis
MGP_PahariEiJ_G0022580	-	50	53.704	ENSPSIG00000012791	-	72	48.624	Pelodiscus_sinensis
MGP_PahariEiJ_G0022580	-	100	81.818	ENSPEMG00000023841	Apobec1	99	82.456	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0022580	-	99	65.179	ENSPCIG00000023973	APOBEC1	97	64.035	Phascolarctos_cinereus
MGP_PahariEiJ_G0022580	-	99	68.421	ENSPPYG00000004228	APOBEC1	92	68.421	Pongo_abelii
MGP_PahariEiJ_G0022580	-	99	70.536	ENSPCAG00000008733	APOBEC1	100	68.449	Procavia_capensis
MGP_PahariEiJ_G0022580	-	93	68.692	ENSPCOG00000013957	APOBEC1	95	68.692	Propithecus_coquereli
MGP_PahariEiJ_G0022580	-	99	66.071	ENSPVAG00000010709	APOBEC1	97	53.070	Pteropus_vampyrus
MGP_PahariEiJ_G0022580	-	100	90.083	ENSRNOG00000015411	Apobec1	100	89.083	Rattus_norvegicus
MGP_PahariEiJ_G0022580	-	99	68.860	ENSRBIG00000031161	APOBEC1	97	68.860	Rhinopithecus_bieti
MGP_PahariEiJ_G0022580	-	99	68.860	ENSRROG00000033576	APOBEC1	97	68.860	Rhinopithecus_roxellana
MGP_PahariEiJ_G0022580	-	88	66.355	ENSSBOG00000030587	APOBEC1	98	68.786	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0022580	-	95	62.385	ENSSHAG00000008925	APOBEC1	96	62.385	Sarcophilus_harrisii
MGP_PahariEiJ_G0022580	-	87	65.714	ENSSARG00000000032	-	100	63.953	Sorex_araneus
MGP_PahariEiJ_G0022580	-	87	68.571	ENSSARG00000011972	-	98	68.992	Sorex_araneus
MGP_PahariEiJ_G0022580	-	91	47.788	ENSSPUG00000009044	-	79	45.894	Sphenodon_punctatus
MGP_PahariEiJ_G0022580	-	99	68.860	ENSSSCG00000000668	APOBEC1	97	68.860	Sus_scrofa
MGP_PahariEiJ_G0022580	-	88	50.467	ENSTGUG00000013118	-	100	54.110	Taeniopygia_guttata
MGP_PahariEiJ_G0022580	-	93	67.606	ENSTBEG00000010043	APOBEC1	90	67.606	Tupaia_belangeri
MGP_PahariEiJ_G0022580	-	100	61.983	ENSTTRG00000014015	APOBEC1	100	65.775	Tursiops_truncatus
MGP_PahariEiJ_G0022580	-	99	66.228	ENSUAMG00000011636	APOBEC1	93	66.228	Ursus_americanus
MGP_PahariEiJ_G0022580	-	99	66.228	ENSUMAG00000016552	APOBEC1	93	66.228	Ursus_maritimus
MGP_PahariEiJ_G0022580	-	99	68.750	ENSVPAG00000001343	APOBEC1	97	66.228	Vicugna_pacos
MGP_PahariEiJ_G0022580	-	99	68.860	ENSVVUG00000010522	APOBEC1	97	68.860	Vulpes_vulpes