EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0022709 (Gene tree)
Gene ID: 110315960
Gene Symbol: Ybx3
Alias: Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 23276 bases
Position: chr2:146419347-146442622
Accession: 110315960
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0052752	CSD	PF00313.22	3.6e-26	1	1
MGP_PahariEiJ_P0052751	CSD	PF00313.22	6.4e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0052752	-	1859	XM_021189975	MGP_PahariEiJ_P0052752	361 (aa)	XP_021045634	UPI000A30AF6D
MGP_PahariEiJ_T0052753	-	851	-	-	- (aa)	-	-
MGP_PahariEiJ_T0052751	-	1690	XM_021189976	MGP_PahariEiJ_P0052751	292 (aa)	XP_021045635	UPI000A30544E
MGP_PahariEiJ_T0052754	-	1050	-	-	- (aa)	-	-
MGP_PahariEiJ_T0052755	-	754	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0022709's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0022709's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0022709	Ybx3	83	50.000	MGP_PahariEiJ_G0028725	Ybx1	90	58.147

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0022709	Ybx3	100	84.409	ENSG00000060138	YBX3	91	97.619	Homo_sapiens
MGP_PahariEiJ_G0022709	Ybx3	96	85.795	ENSAMEG00000009393	YBX3	89	91.026	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0022709	Ybx3	73	98.077	ENSAPLG00000003147	YBX3	76	98.077	Anas_platyrhynchos
MGP_PahariEiJ_G0022709	Ybx3	86	87.147	ENSANAG00000024492	-	100	89.873	Aotus_nancymaae
MGP_PahariEiJ_G0022709	Ybx3	100	64.784	ENSANAG00000033366	-	77	78.462	Aotus_nancymaae
MGP_PahariEiJ_G0022709	Ybx3	100	83.684	ENSBTAG00000009663	YBX3	83	87.540	Bos_taurus
MGP_PahariEiJ_G0022709	Ybx3	96	66.549	ENSCJAG00000033824	-	88	84.810	Callithrix_jacchus
MGP_PahariEiJ_G0022709	Ybx3	100	84.367	ENSCJAG00000021660	-	86	88.994	Callithrix_jacchus
MGP_PahariEiJ_G0022709	Ybx3	79	93.031	ENSCAFG00000013401	YBX3	100	93.548	Canis_familiaris
MGP_PahariEiJ_G0022709	Ybx3	100	81.867	ENSCAFG00020006412	YBX3	84	88.924	Canis_lupus_dingo
MGP_PahariEiJ_G0022709	Ybx3	100	83.684	ENSCHIG00000010863	YBX3	88	90.415	Capra_hircus
MGP_PahariEiJ_G0022709	Ybx3	100	74.074	ENSTSYG00000035821	-	72	95.745	Carlito_syrichta
MGP_PahariEiJ_G0022709	Ybx3	79	93.728	ENSTSYG00000004204	-	96	88.889	Carlito_syrichta
MGP_PahariEiJ_G0022709	Ybx3	79	88.811	ENSCAPG00000015039	YBX3	93	88.811	Cavia_aperea
MGP_PahariEiJ_G0022709	Ybx3	81	89.761	ENSCPOG00000011329	YBX3	92	88.179	Cavia_porcellus
MGP_PahariEiJ_G0022709	Ybx3	100	84.140	ENSCCAG00000016469	YBX3	85	88.994	Cebus_capucinus
MGP_PahariEiJ_G0022709	Ybx3	100	83.646	ENSCATG00000034411	YBX3	85	88.679	Cercocebus_atys
MGP_PahariEiJ_G0022709	Ybx3	79	89.860	ENSCLAG00000016030	YBX3	94	89.860	Chinchilla_lanigera
MGP_PahariEiJ_G0022709	Ybx3	100	83.914	ENSCSAG00000008744	YBX3	85	88.994	Chlorocebus_sabaeus
MGP_PahariEiJ_G0022709	Ybx3	94	76.301	ENSCHOG00000011988	YBX3	56	95.745	Choloepus_hoffmanni
MGP_PahariEiJ_G0022709	Ybx3	80	79.725	ENSCPBG00000014147	YBX3	78	86.957	Chrysemys_picta_bellii
MGP_PahariEiJ_G0022709	Ybx3	57	56.818	ENSCING00000010654	yb1/2/3	73	54.673	Ciona_intestinalis
MGP_PahariEiJ_G0022709	Ybx3	81	90.508	ENSCANG00000036801	YBX3	100	89.206	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0022709	Ybx3	100	98.338	ENSCGRG00001016148	Ybx3	100	98.338	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0022709	Ybx3	79	96.886	ENSCGRG00000004563	Ybx3	98	96.886	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0022709	Ybx3	91	82.979	ENSDORG00000009103	Ybx3	89	85.714	Dipodomys_ordii
MGP_PahariEiJ_G0022709	Ybx3	78	83.509	ENSETEG00000002557	YBX3	99	82.746	Echinops_telfairi
MGP_PahariEiJ_G0022709	Ybx3	100	82.114	ENSEASG00005014726	YBX3	100	84.553	Equus_asinus_asinus
MGP_PahariEiJ_G0022709	Ybx3	100	85.095	ENSECAG00000013777	YBX3	100	87.534	Equus_caballus
MGP_PahariEiJ_G0022709	Ybx3	78	90.493	ENSEEUG00000010415	YBX3	100	91.901	Erinaceus_europaeus
MGP_PahariEiJ_G0022709	Ybx3	100	84.718	ENSFCAG00000027748	YBX3	85	91.167	Felis_catus
MGP_PahariEiJ_G0022709	Ybx3	73	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
MGP_PahariEiJ_G0022709	Ybx3	79	86.014	ENSFDAG00000021192	YBX3	92	86.014	Fukomys_damarensis
MGP_PahariEiJ_G0022709	Ybx3	91	71.852	ENSGALG00000031890	YBX3	78	86.087	Gallus_gallus
MGP_PahariEiJ_G0022709	Ybx3	91	74.254	ENSGAGG00000017780	YBX3	78	88.596	Gopherus_agassizii
MGP_PahariEiJ_G0022709	Ybx3	100	84.182	ENSGGOG00000001352	YBX3	85	89.308	Gorilla_gorilla
MGP_PahariEiJ_G0022709	Ybx3	75	80.882	ENSHGLG00000015495	-	87	79.592	Heterocephalus_glaber_female
MGP_PahariEiJ_G0022709	Ybx3	83	77.961	ENSHGLG00000014798	-	90	80.328	Heterocephalus_glaber_female
MGP_PahariEiJ_G0022709	Ybx3	74	91.743	ENSHGLG00100003589	YBX3	87	91.743	Heterocephalus_glaber_male
MGP_PahariEiJ_G0022709	Ybx3	93	85.000	ENSSTOG00000032577	-	87	86.218	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0022709	Ybx3	79	87.324	ENSSTOG00000002108	-	88	87.324	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0022709	Ybx3	81	70.748	ENSJJAG00000014239	Ybx3	100	85.417	Jaculus_jaculus
MGP_PahariEiJ_G0022709	Ybx3	100	87.534	ENSLAFG00000017247	YBX3	94	86.709	Loxodonta_africana
MGP_PahariEiJ_G0022709	Ybx3	100	84.140	ENSMFAG00000039369	YBX3	85	88.994	Macaca_fascicularis
MGP_PahariEiJ_G0022709	Ybx3	88	86.154	ENSMMUG00000022469	YBX3	98	88.994	Macaca_mulatta
MGP_PahariEiJ_G0022709	Ybx3	100	83.871	ENSMNEG00000045109	YBX3	85	88.994	Macaca_nemestrina
MGP_PahariEiJ_G0022709	Ybx3	93	82.006	ENSMLEG00000033618	YBX3	81	91.608	Mandrillus_leucophaeus
MGP_PahariEiJ_G0022709	Ybx3	72	98.095	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
MGP_PahariEiJ_G0022709	Ybx3	88	97.806	ENSMAUG00000012185	Ybx3	100	97.806	Mesocricetus_auratus
MGP_PahariEiJ_G0022709	Ybx3	100	73.810	ENSMICG00000031459	-	85	76.132	Microcebus_murinus
MGP_PahariEiJ_G0022709	Ybx3	100	85.676	ENSMICG00000038002	-	85	92.405	Microcebus_murinus
MGP_PahariEiJ_G0022709	Ybx3	86	96.764	ENSMOCG00000016291	Ybx3	100	98.723	Microtus_ochrogaster
MGP_PahariEiJ_G0022709	Ybx3	78	84.615	ENSMODG00000018248	YBX3	91	84.321	Monodelphis_domestica
MGP_PahariEiJ_G0022709	Ybx3	100	99.658	MGP_CAROLIEiJ_G0028947	Ybx3	100	99.658	Mus_caroli
MGP_PahariEiJ_G0022709	Ybx3	100	99.446	ENSMUSG00000030189	Ybx3	100	99.446	Mus_musculus
MGP_PahariEiJ_G0022709	Ybx3	100	99.723	MGP_SPRETEiJ_G0029994	Ybx3	100	99.723	Mus_spretus
MGP_PahariEiJ_G0022709	Ybx3	100	70.263	ENSMPUG00000011810	YBX3	85	75.692	Mustela_putorius_furo
MGP_PahariEiJ_G0022709	Ybx3	73	90.706	ENSMLUG00000007476	YBX3	100	90.706	Myotis_lucifugus
MGP_PahariEiJ_G0022709	Ybx3	81	90.136	ENSNGAG00000000710	Ybx3	100	86.992	Nannospalax_galili
MGP_PahariEiJ_G0022709	Ybx3	87	84.112	ENSNLEG00000034844	YBX3	90	85.535	Nomascus_leucogenys
MGP_PahariEiJ_G0022709	Ybx3	87	82.132	ENSODEG00000017957	YBX3	93	84.177	Octodon_degus
MGP_PahariEiJ_G0022709	Ybx3	81	88.776	ENSOCUG00000001889	YBX3	88	88.411	Oryctolagus_cuniculus
MGP_PahariEiJ_G0022709	Ybx3	100	85.411	ENSOGAG00000013245	YBX3	86	90.093	Otolemur_garnettii
MGP_PahariEiJ_G0022709	Ybx3	71	97.938	ENSOARG00000020919	YBX3	99	81.271	Ovis_aries
MGP_PahariEiJ_G0022709	Ybx3	100	81.644	ENSPPAG00000039068	YBX3	82	92.230	Pan_paniscus
MGP_PahariEiJ_G0022709	Ybx3	100	84.987	ENSPPRG00000005859	YBX3	85	91.483	Panthera_pardus
MGP_PahariEiJ_G0022709	Ybx3	78	93.662	ENSPTIG00000005322	YBX3	81	93.357	Panthera_tigris_altaica
MGP_PahariEiJ_G0022709	Ybx3	100	83.957	ENSPTRG00000004681	YBX3	85	89.308	Pan_troglodytes
MGP_PahariEiJ_G0022709	Ybx3	100	83.871	ENSPANG00000010280	YBX3	85	88.679	Papio_anubis
MGP_PahariEiJ_G0022709	Ybx3	73	84.651	ENSPSIG00000009247	YBX3	100	84.651	Pelodiscus_sinensis
MGP_PahariEiJ_G0022709	Ybx3	88	98.101	ENSPEMG00000012132	-	100	98.101	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0022709	Ybx3	83	97.510	ENSPEMG00000010391	-	92	97.510	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0022709	Ybx3	71	82.625	ENSPCIG00000029949	YBX3	100	82.625	Phascolarctos_cinereus
MGP_PahariEiJ_G0022709	Ybx3	100	84.367	ENSPPYG00000004279	YBX3	100	85.445	Pongo_abelii
MGP_PahariEiJ_G0022709	Ybx3	78	85.417	ENSPCAG00000001397	YBX3	100	87.500	Procavia_capensis
MGP_PahariEiJ_G0022709	Ybx3	51	91.257	ENSPCOG00000011663	YBX3	80	87.805	Propithecus_coquereli
MGP_PahariEiJ_G0022709	Ybx3	82	79.000	ENSPVAG00000006740	YBX3	85	78.549	Pteropus_vampyrus
MGP_PahariEiJ_G0022709	Ybx3	100	99.169	ENSRNOG00000005480	Ybx3	100	99.169	Rattus_norvegicus
MGP_PahariEiJ_G0022709	Ybx3	100	84.097	ENSRBIG00000039208	YBX3	100	84.636	Rhinopithecus_bieti
MGP_PahariEiJ_G0022709	Ybx3	100	84.097	ENSRROG00000029638	YBX3	100	85.175	Rhinopithecus_roxellana
MGP_PahariEiJ_G0022709	Ybx3	100	78.167	ENSSBOG00000030573	YBX3	86	90.722	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0022709	Ybx3	66	98.837	ENSSHAG00000003262	YBX3	98	83.505	Sarcophilus_harrisii
MGP_PahariEiJ_G0022709	Ybx3	91	85.965	ENSSSCG00000000633	YBX3	84	90.625	Sus_scrofa
MGP_PahariEiJ_G0022709	Ybx3	72	97.143	ENSTGUG00000012047	YBX3	75	97.143	Taeniopygia_guttata
MGP_PahariEiJ_G0022709	Ybx3	100	81.199	ENSTBEG00000012570	YBX3	83	91.362	Tupaia_belangeri
MGP_PahariEiJ_G0022709	Ybx3	72	83.083	ENSTTRG00000008045	YBX3	100	84.211	Tursiops_truncatus
MGP_PahariEiJ_G0022709	Ybx3	76	90.253	ENSUAMG00000016662	YBX3	100	90.253	Ursus_americanus
MGP_PahariEiJ_G0022709	Ybx3	78	93.662	ENSUMAG00000016118	YBX3	94	93.357	Ursus_maritimus
MGP_PahariEiJ_G0022709	Ybx3	59	100.000	ENSVPAG00000000876	YBX3	100	70.775	Vicugna_pacos
MGP_PahariEiJ_G0022709	Ybx3	76	89.531	ENSVVUG00000004956	YBX3	100	89.531	Vulpes_vulpes
MGP_PahariEiJ_G0022709	Ybx3	74	72.727	ENSXETG00000016239	ybx3	86	82.857	Xenopus_tropicalis