EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0023019 (Gene tree)
Gene ID: 110337560
Gene Symbol: Usb1
Alias: AA960436
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 15386 bases
Position: chr20:19512334-19527719
Accession: 110337560
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0053911	HVSL	PF09749.9	1e-63	1	1
MGP_PahariEiJ_P0053913	HVSL	PF09749.9	2e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0053914	-	535	-	-	- (aa)	-	-
MGP_PahariEiJ_T0053913	-	1224	-	MGP_PahariEiJ_P0053913	117 (aa)	-	-
MGP_PahariEiJ_T0053912	-	875	-	-	- (aa)	-	-
MGP_PahariEiJ_T0053911	-	1776	XM_021220542	MGP_PahariEiJ_P0053911	267 (aa)	XP_021076201	UPI000A311750

Gene Model

Click here to download MGP_PahariEiJ_G0023019's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0023019's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0023019	Usb1	100	82.906	ENSG00000103005	USB1	100	84.579	Homo_sapiens
MGP_PahariEiJ_G0023019	Usb1	100	54.701	ENSAPOG00000011942	usb1	82	52.814	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0023019	Usb1	100	82.051	ENSAMEG00000017205	USB1	100	80.669	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0023019	Usb1	100	52.991	ENSACIG00000012234	usb1	99	51.111	Amphilophus_citrinellus
MGP_PahariEiJ_G0023019	Usb1	100	53.846	ENSAOCG00000014831	usb1	99	49.110	Amphiprion_ocellaris
MGP_PahariEiJ_G0023019	Usb1	100	53.846	ENSAPEG00000000296	usb1	99	49.466	Amphiprion_percula
MGP_PahariEiJ_G0023019	Usb1	100	52.991	ENSATEG00000009348	usb1	82	53.247	Anabas_testudineus
MGP_PahariEiJ_G0023019	Usb1	91	65.421	ENSAPLG00000002756	USB1	100	67.699	Anas_platyrhynchos
MGP_PahariEiJ_G0023019	Usb1	96	63.393	ENSACAG00000015481	USB1	100	62.445	Anolis_carolinensis
MGP_PahariEiJ_G0023019	Usb1	100	86.325	ENSANAG00000035640	USB1	100	82.022	Aotus_nancymaae
MGP_PahariEiJ_G0023019	Usb1	100	52.137	ENSACLG00000020586	usb1	99	47.857	Astatotilapia_calliptera
MGP_PahariEiJ_G0023019	Usb1	100	49.573	ENSAMXG00000040146	usb1	75	51.556	Astyanax_mexicanus
MGP_PahariEiJ_G0023019	Usb1	100	82.906	ENSBTAG00000015758	USB1	100	80.150	Bos_taurus
MGP_PahariEiJ_G0023019	Usb1	100	88.034	ENSCJAG00000011733	USB1	100	82.772	Callithrix_jacchus
MGP_PahariEiJ_G0023019	Usb1	100	82.051	ENSCAFG00000008556	USB1	73	77.206	Canis_familiaris
MGP_PahariEiJ_G0023019	Usb1	100	82.051	ENSCAFG00020009263	USB1	99	75.273	Canis_lupus_dingo
MGP_PahariEiJ_G0023019	Usb1	100	79.487	ENSCHIG00000024290	USB1	100	78.277	Capra_hircus
MGP_PahariEiJ_G0023019	Usb1	100	83.761	ENSTSYG00000006997	USB1	100	82.397	Carlito_syrichta
MGP_PahariEiJ_G0023019	Usb1	99	81.897	ENSCAPG00000009057	USB1	100	69.397	Cavia_aperea
MGP_PahariEiJ_G0023019	Usb1	100	82.051	ENSCPOG00000014325	USB1	100	79.851	Cavia_porcellus
MGP_PahariEiJ_G0023019	Usb1	100	88.034	ENSCCAG00000022132	USB1	100	82.772	Cebus_capucinus
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSCATG00000032174	USB1	100	81.648	Cercocebus_atys
MGP_PahariEiJ_G0023019	Usb1	66	86.932	ENSCLAG00000007363	USB1	100	86.932	Chinchilla_lanigera
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSCSAG00000004783	USB1	100	82.022	Chlorocebus_sabaeus
MGP_PahariEiJ_G0023019	Usb1	100	59.829	ENSCPBG00000026943	USB1	100	58.993	Chrysemys_picta_bellii
MGP_PahariEiJ_G0023019	Usb1	97	33.333	ENSCING00000011490	-	89	31.646	Ciona_intestinalis
MGP_PahariEiJ_G0023019	Usb1	92	36.937	ENSCSAVG00000000894	-	81	32.444	Ciona_savignyi
MGP_PahariEiJ_G0023019	Usb1	100	84.615	ENSCANG00000037135	USB1	100	80.524	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0023019	Usb1	100	89.744	ENSCGRG00001011243	USB1	100	88.060	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0023019	Usb1	100	89.744	ENSCGRG00000013252	USB1	100	88.060	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0023019	Usb1	100	54.701	ENSCSEG00000013881	usb1	99	46.715	Cynoglossus_semilaevis
MGP_PahariEiJ_G0023019	Usb1	99	48.276	ENSCVAG00000009252	usb1	97	50.000	Cyprinodon_variegatus
MGP_PahariEiJ_G0023019	Usb1	100	49.573	ENSDARG00000003841	usb1	87	48.536	Danio_rerio
MGP_PahariEiJ_G0023019	Usb1	100	84.615	ENSDORG00000001888	Usb1	100	81.273	Dipodomys_ordii
MGP_PahariEiJ_G0023019	Usb1	91	44.037	FBgn0037713	CG16790	78	40.097	Drosophila_melanogaster
MGP_PahariEiJ_G0023019	Usb1	100	79.487	ENSETEG00000019682	USB1	100	67.790	Echinops_telfairi
MGP_PahariEiJ_G0023019	Usb1	100	51.282	ENSEBUG00000005889	usb1	78	49.550	Eptatretus_burgeri
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSEASG00005005484	USB1	100	82.772	Equus_asinus_asinus
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSECAG00000019493	USB1	91	82.772	Equus_caballus
MGP_PahariEiJ_G0023019	Usb1	66	76.136	ENSEEUG00000000154	USB1	66	76.136	Erinaceus_europaeus
MGP_PahariEiJ_G0023019	Usb1	100	45.763	ENSELUG00000010974	usb1	87	48.770	Esox_lucius
MGP_PahariEiJ_G0023019	Usb1	100	86.325	ENSFCAG00000002693	USB1	100	82.397	Felis_catus
MGP_PahariEiJ_G0023019	Usb1	98	62.609	ENSFALG00000006876	USB1	99	59.245	Ficedula_albicollis
MGP_PahariEiJ_G0023019	Usb1	100	83.761	ENSFDAG00000010052	USB1	100	80.899	Fukomys_damarensis
MGP_PahariEiJ_G0023019	Usb1	90	52.381	ENSFHEG00000012334	usb1	77	53.093	Fundulus_heteroclitus
MGP_PahariEiJ_G0023019	Usb1	100	51.282	ENSGMOG00000004228	usb1	99	53.363	Gadus_morhua
MGP_PahariEiJ_G0023019	Usb1	100	61.017	ENSGALG00000035604	USB1	99	60.902	Gallus_gallus
MGP_PahariEiJ_G0023019	Usb1	100	51.695	ENSGAFG00000021890	usb1	82	53.947	Gambusia_affinis
MGP_PahariEiJ_G0023019	Usb1	100	49.573	ENSGACG00000003257	usb1	99	48.551	Gasterosteus_aculeatus
MGP_PahariEiJ_G0023019	Usb1	100	62.774	ENSGAGG00000022572	USB1	100	60.440	Gopherus_agassizii
MGP_PahariEiJ_G0023019	Usb1	100	84.615	ENSGGOG00000017147	USB1	100	81.273	Gorilla_gorilla
MGP_PahariEiJ_G0023019	Usb1	100	52.137	ENSHBUG00000009823	usb1	81	55.066	Haplochromis_burtoni
MGP_PahariEiJ_G0023019	Usb1	100	82.906	ENSHGLG00000016078	USB1	98	82.022	Heterocephalus_glaber_female
MGP_PahariEiJ_G0023019	Usb1	100	82.906	ENSHGLG00100005562	USB1	98	82.022	Heterocephalus_glaber_male
MGP_PahariEiJ_G0023019	Usb1	100	56.410	ENSHCOG00000015633	usb1	99	51.724	Hippocampus_comes
MGP_PahariEiJ_G0023019	Usb1	100	52.137	ENSIPUG00000008601	usb1	78	52.232	Ictalurus_punctatus
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSSTOG00000007548	USB1	100	79.853	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0023019	Usb1	100	86.325	ENSJJAG00000021859	Usb1	100	86.142	Jaculus_jaculus
MGP_PahariEiJ_G0023019	Usb1	100	52.137	ENSKMAG00000007200	usb1	80	52.423	Kryptolebias_marmoratus
MGP_PahariEiJ_G0023019	Usb1	100	50.427	ENSLBEG00000008452	usb1	64	55.263	Labrus_bergylta
MGP_PahariEiJ_G0023019	Usb1	91	63.208	ENSLACG00000000105	USB1	72	61.538	Latimeria_chalumnae
MGP_PahariEiJ_G0023019	Usb1	100	53.846	ENSLOCG00000000465	usb1	99	48.993	Lepisosteus_oculatus
MGP_PahariEiJ_G0023019	Usb1	100	66.667	ENSLAFG00000002267	USB1	100	67.037	Loxodonta_africana
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSMFAG00000003926	USB1	100	82.022	Macaca_fascicularis
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSMMUG00000022669	USB1	100	82.022	Macaca_mulatta
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSMNEG00000042487	USB1	100	81.648	Macaca_nemestrina
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSMLEG00000028756	USB1	100	82.022	Mandrillus_leucophaeus
MGP_PahariEiJ_G0023019	Usb1	100	52.991	ENSMAMG00000015092	usb1	99	49.819	Mastacembelus_armatus
MGP_PahariEiJ_G0023019	Usb1	100	52.137	ENSMZEG00005010008	usb1	99	49.104	Maylandia_zebra
MGP_PahariEiJ_G0023019	Usb1	100	88.034	ENSMAUG00000007832	Usb1	100	87.266	Mesocricetus_auratus
MGP_PahariEiJ_G0023019	Usb1	100	86.325	ENSMICG00000004900	USB1	100	81.273	Microcebus_murinus
MGP_PahariEiJ_G0023019	Usb1	100	88.015	ENSMOCG00000022647	Usb1	100	88.015	Microtus_ochrogaster
MGP_PahariEiJ_G0023019	Usb1	100	52.991	ENSMMOG00000000490	usb1	99	49.618	Mola_mola
MGP_PahariEiJ_G0023019	Usb1	100	70.940	ENSMODG00000014067	USB1	100	65.683	Monodelphis_domestica
MGP_PahariEiJ_G0023019	Usb1	100	49.573	ENSMALG00000005930	usb1	80	51.316	Monopterus_albus
MGP_PahariEiJ_G0023019	Usb1	100	95.506	MGP_CAROLIEiJ_G0031421	Usb1	100	95.506	Mus_caroli
MGP_PahariEiJ_G0023019	Usb1	100	96.581	ENSMUSG00000031792	Usb1	100	96.460	Mus_musculus
MGP_PahariEiJ_G0023019	Usb1	100	95.131	MGP_SPRETEiJ_G0032540	Usb1	100	95.131	Mus_spretus
MGP_PahariEiJ_G0023019	Usb1	100	79.487	ENSMPUG00000004684	USB1	96	78.810	Mustela_putorius_furo
MGP_PahariEiJ_G0023019	Usb1	100	81.197	ENSMLUG00000007400	USB1	100	84.416	Myotis_lucifugus
MGP_PahariEiJ_G0023019	Usb1	100	89.744	ENSNGAG00000009703	Usb1	100	86.989	Nannospalax_galili
MGP_PahariEiJ_G0023019	Usb1	100	50.427	ENSNBRG00000008747	usb1	99	54.206	Neolamprologus_brichardi
MGP_PahariEiJ_G0023019	Usb1	100	84.615	ENSNLEG00000003340	USB1	100	80.556	Nomascus_leucogenys
MGP_PahariEiJ_G0023019	Usb1	84	70.408	ENSMEUG00000003328	-	100	61.438	Notamacropus_eugenii
MGP_PahariEiJ_G0023019	Usb1	99	81.034	ENSOPRG00000011803	USB1	72	94.118	Ochotona_princeps
MGP_PahariEiJ_G0023019	Usb1	100	82.051	ENSODEG00000016214	USB1	100	79.401	Octodon_degus
MGP_PahariEiJ_G0023019	Usb1	100	52.991	ENSONIG00000011063	usb1	81	55.507	Oreochromis_niloticus
MGP_PahariEiJ_G0023019	Usb1	100	72.034	ENSOANG00000012118	USB1	94	72.000	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0023019	Usb1	100	50.427	ENSORLG00000012479	usb1	99	48.529	Oryzias_latipes
MGP_PahariEiJ_G0023019	Usb1	100	49.573	ENSORLG00020018671	usb1	84	51.316	Oryzias_latipes_hni
MGP_PahariEiJ_G0023019	Usb1	100	50.427	ENSORLG00015009679	usb1	84	51.316	Oryzias_latipes_hsok
MGP_PahariEiJ_G0023019	Usb1	100	53.846	ENSOMEG00000012930	usb1	99	47.273	Oryzias_melastigma
MGP_PahariEiJ_G0023019	Usb1	100	73.783	ENSOGAG00000003273	USB1	100	75.281	Otolemur_garnettii
MGP_PahariEiJ_G0023019	Usb1	100	80.342	ENSOARG00000001107	USB1	93	78.601	Ovis_aries
MGP_PahariEiJ_G0023019	Usb1	100	84.615	ENSPPAG00000042137	USB1	100	81.648	Pan_paniscus
MGP_PahariEiJ_G0023019	Usb1	100	84.615	ENSPPRG00000024797	USB1	100	81.273	Panthera_pardus
MGP_PahariEiJ_G0023019	Usb1	100	84.615	ENSPTIG00000007506	USB1	100	81.273	Panthera_tigris_altaica
MGP_PahariEiJ_G0023019	Usb1	100	83.761	ENSPTRG00000008172	USB1	100	85.047	Pan_troglodytes
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSPANG00000025138	USB1	100	82.022	Papio_anubis
MGP_PahariEiJ_G0023019	Usb1	100	50.427	ENSPKIG00000015109	usb1	75	53.363	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0023019	Usb1	85	52.525	ENSPSIG00000004305	USB1	100	50.222	Pelodiscus_sinensis
MGP_PahariEiJ_G0023019	Usb1	100	52.137	ENSPMGG00000017725	usb1	97	50.192	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0023019	Usb1	100	92.308	ENSPEMG00000016183	Usb1	100	87.868	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0023019	Usb1	100	51.261	ENSPMAG00000000462	usb1	100	50.633	Petromyzon_marinus
MGP_PahariEiJ_G0023019	Usb1	96	51.786	ENSPFOG00000011130	usb1	82	53.509	Poecilia_formosa
MGP_PahariEiJ_G0023019	Usb1	100	50.847	ENSPLAG00000009820	usb1	82	53.509	Poecilia_latipinna
MGP_PahariEiJ_G0023019	Usb1	96	51.786	ENSPMEG00000006402	usb1	82	53.509	Poecilia_mexicana
MGP_PahariEiJ_G0023019	Usb1	90	54.286	ENSPREG00000001047	usb1	78	55.670	Poecilia_reticulata
MGP_PahariEiJ_G0023019	Usb1	100	77.966	ENSPPYG00000007401	USB1	100	77.165	Pongo_abelii
MGP_PahariEiJ_G0023019	Usb1	100	86.325	ENSPCOG00000022612	USB1	100	82.022	Propithecus_coquereli
MGP_PahariEiJ_G0023019	Usb1	100	82.906	ENSPVAG00000004613	USB1	100	78.277	Pteropus_vampyrus
MGP_PahariEiJ_G0023019	Usb1	100	52.137	ENSPNYG00000022262	usb1	81	55.066	Pundamilia_nyererei
MGP_PahariEiJ_G0023019	Usb1	100	51.282	ENSPNAG00000011736	usb1	76	52.232	Pygocentrus_nattereri
MGP_PahariEiJ_G0023019	Usb1	100	93.162	ENSRNOG00000013216	Usb1	100	92.135	Rattus_norvegicus
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSRBIG00000044466	USB1	100	86.449	Rhinopithecus_bieti
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSRROG00000029211	USB1	100	81.648	Rhinopithecus_roxellana
MGP_PahariEiJ_G0023019	Usb1	100	87.179	ENSSBOG00000029362	USB1	100	82.022	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0023019	Usb1	100	70.940	ENSSHAG00000006993	USB1	96	68.443	Sarcophilus_harrisii
MGP_PahariEiJ_G0023019	Usb1	100	52.137	ENSSFOG00015023663	usb1	74	55.696	Scleropages_formosus
MGP_PahariEiJ_G0023019	Usb1	100	53.846	ENSSMAG00000015834	usb1	99	48.299	Scophthalmus_maximus
MGP_PahariEiJ_G0023019	Usb1	100	52.991	ENSSDUG00000002949	usb1	99	49.638	Seriola_dumerili
MGP_PahariEiJ_G0023019	Usb1	100	52.991	ENSSLDG00000014174	usb1	99	49.470	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0023019	Usb1	100	64.957	ENSSPUG00000006741	USB1	100	65.421	Sphenodon_punctatus
MGP_PahariEiJ_G0023019	Usb1	100	52.137	ENSSPAG00000007484	usb1	81	52.381	Stegastes_partitus
MGP_PahariEiJ_G0023019	Usb1	100	85.470	ENSSSCG00000002807	USB1	100	81.413	Sus_scrofa
MGP_PahariEiJ_G0023019	Usb1	98	63.478	ENSTGUG00000004792	USB1	99	60.000	Taeniopygia_guttata
MGP_PahariEiJ_G0023019	Usb1	100	48.718	ENSTRUG00000021069	usb1	99	48.699	Takifugu_rubripes
MGP_PahariEiJ_G0023019	Usb1	99	47.170	ENSTNIG00000000626	usb1	99	47.170	Tetraodon_nigroviridis
MGP_PahariEiJ_G0023019	Usb1	99	64.655	ENSTBEG00000001507	USB1	100	61.207	Tupaia_belangeri
MGP_PahariEiJ_G0023019	Usb1	100	82.906	ENSUAMG00000016823	USB1	100	80.669	Ursus_americanus
MGP_PahariEiJ_G0023019	Usb1	100	82.906	ENSUMAG00000021369	USB1	100	84.112	Ursus_maritimus
MGP_PahariEiJ_G0023019	Usb1	73	82.353	ENSVPAG00000009834	-	59	82.500	Vicugna_pacos
MGP_PahariEiJ_G0023019	Usb1	100	82.051	ENSVVUG00000023700	USB1	95	79.675	Vulpes_vulpes
MGP_PahariEiJ_G0023019	Usb1	91	57.944	ENSXETG00000013795	usb1	89	56.951	Xenopus_tropicalis
MGP_PahariEiJ_G0023019	Usb1	100	51.695	ENSXMAG00000024687	usb1	67	53.947	Xiphophorus_maculatus