EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0023260 (Gene tree)
Gene ID: 110337659
Gene Symbol: Snai3
Alias: Smuc|Snail-related gene from muscle cells|Zfp293
Full Name: snail family transcriptional repressor 3
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 6167 bases
Position: chr20:45640760-45646926
Accession: 110337659
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0054610	zf-C2H2	PF00096.26	3.9e-24	1	4
MGP_PahariEiJ_P0054610	zf-C2H2	PF00096.26	3.9e-24	2	4
MGP_PahariEiJ_P0054610	zf-C2H2	PF00096.26	3.9e-24	3	4
MGP_PahariEiJ_P0054610	zf-C2H2	PF00096.26	3.9e-24	4	4
MGP_PahariEiJ_P0054610	zf-met	PF12874.7	2.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0054610	-	1607	XM_021220708	MGP_PahariEiJ_P0054610	288 (aa)	XP_021076367	UPI000A30D219

Gene Model

Click here to download MGP_PahariEiJ_G0023260's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0023260's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0023260	Snai3	51	48.544	MGP_PahariEiJ_G0022203	Prdm5	68	48.544
MGP_PahariEiJ_G0023260	Snai3	66	32.353	MGP_PahariEiJ_G0018140	Zfp652	61	32.353
MGP_PahariEiJ_G0023260	Snai3	99	47.059	MGP_PahariEiJ_G0016188	Snai2	99	47.099
MGP_PahariEiJ_G0023260	Snai3	53	47.297	MGP_PahariEiJ_G0019173	Zfp236	56	34.228

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSG00000019549	SNAI2	99	47.099	Homo_sapiens
MGP_PahariEiJ_G0023260	Snai3	100	70.648	ENSG00000185669	SNAI3	100	72.696	Homo_sapiens
MGP_PahariEiJ_G0023260	Snai3	99	46.713	ENSAMEG00000009606	SNAI2	99	46.441	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0023260	Snai3	100	72.355	ENSANAG00000032748	SNAI3	100	72.355	Aotus_nancymaae
MGP_PahariEiJ_G0023260	Snai3	99	46.552	ENSANAG00000021163	SNAI2	99	47.099	Aotus_nancymaae
MGP_PahariEiJ_G0023260	Snai3	99	46.552	ENSBTAG00000013227	SNAI2	99	47.603	Bos_taurus
MGP_PahariEiJ_G0023260	Snai3	99	66.552	ENSBTAG00000017528	SNAI3	99	66.552	Bos_taurus
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSCJAG00000013499	SNAI2	99	47.099	Callithrix_jacchus
MGP_PahariEiJ_G0023260	Snai3	99	47.059	ENSCAFG00000006638	SNAI2	99	46.780	Canis_familiaris
MGP_PahariEiJ_G0023260	Snai3	100	64.505	ENSCAFG00000029458	SNAI3	100	66.553	Canis_familiaris
MGP_PahariEiJ_G0023260	Snai3	100	64.846	ENSCAFG00020004719	SNAI3	100	66.894	Canis_lupus_dingo
MGP_PahariEiJ_G0023260	Snai3	99	47.059	ENSCAFG00020015384	SNAI2	99	46.780	Canis_lupus_dingo
MGP_PahariEiJ_G0023260	Snai3	99	46.552	ENSCHIG00000024410	SNAI2	99	47.603	Capra_hircus
MGP_PahariEiJ_G0023260	Snai3	99	65.862	ENSCHIG00000018087	SNAI3	99	65.862	Capra_hircus
MGP_PahariEiJ_G0023260	Snai3	91	67.170	ENSTSYG00000025594	SNAI3	91	69.057	Carlito_syrichta
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSCCAG00000024100	SNAI2	99	47.099	Cebus_capucinus
MGP_PahariEiJ_G0023260	Snai3	100	71.672	ENSCATG00000031714	SNAI3	100	71.672	Cercocebus_atys
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSCATG00000028656	SNAI2	99	47.099	Cercocebus_atys
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSCSAG00000014787	SNAI2	99	47.099	Chlorocebus_sabaeus
MGP_PahariEiJ_G0023260	Snai3	100	66.894	ENSCSAG00000003047	SNAI3	100	66.894	Chlorocebus_sabaeus
MGP_PahariEiJ_G0023260	Snai3	99	58.000	ENSCPBG00000023474	SNAI3	99	58.000	Chrysemys_picta_bellii
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSCANG00000029656	SNAI2	99	47.099	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0023260	Snai3	93	69.853	ENSCANG00000031124	SNAI3	83	69.853	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0023260	Snai3	99	46.367	ENSCGRG00001013674	Snai2	99	46.441	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0023260	Snai3	100	86.806	ENSCGRG00001011389	Snai3	100	86.806	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0023260	Snai3	99	46.367	ENSCGRG00000012119	Snai2	99	46.441	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0023260	Snai3	100	86.806	ENSCGRG00000014932	Snai3	100	86.806	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0023260	Snai3	80	48.276	ENSDNOG00000035204	-	100	51.293	Dasypus_novemcinctus
MGP_PahariEiJ_G0023260	Snai3	92	65.428	ENSEASG00005000614	SNAI3	88	68.401	Equus_asinus_asinus
MGP_PahariEiJ_G0023260	Snai3	99	67.123	ENSECAG00000012131	SNAI3	99	69.863	Equus_caballus
MGP_PahariEiJ_G0023260	Snai3	100	60.751	ENSEEUG00000000841	SNAI3	100	60.751	Erinaceus_europaeus
MGP_PahariEiJ_G0023260	Snai3	99	48.630	ENSELUG00000018742	-	99	48.630	Esox_lucius
MGP_PahariEiJ_G0023260	Snai3	99	63.415	ENSFCAG00000043885	SNAI3	99	63.415	Felis_catus
MGP_PahariEiJ_G0023260	Snai3	99	57.966	ENSGAGG00000023571	SNAI3	99	57.966	Gopherus_agassizii
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSGGOG00000000959	SNAI2	99	47.099	Gorilla_gorilla
MGP_PahariEiJ_G0023260	Snai3	100	71.331	ENSGGOG00000012559	SNAI3	100	73.379	Gorilla_gorilla
MGP_PahariEiJ_G0023260	Snai3	50	69.655	ENSHCOG00000019435	SNAI2	99	43.478	Hippocampus_comes
MGP_PahariEiJ_G0023260	Snai3	99	46.575	ENSIPUG00000000131	snai2	99	47.260	Ictalurus_punctatus
MGP_PahariEiJ_G0023260	Snai3	99	46.207	ENSSTOG00000028743	SNAI2	99	46.233	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0023260	Snai3	100	77.133	ENSJJAG00000019934	Snai3	100	78.840	Jaculus_jaculus
MGP_PahariEiJ_G0023260	Snai3	99	46.918	ENSLOCG00000005992	SNAI2	99	47.079	Lepisosteus_oculatus
MGP_PahariEiJ_G0023260	Snai3	100	64.164	ENSLAFG00000005117	SNAI3	100	65.529	Loxodonta_africana
MGP_PahariEiJ_G0023260	Snai3	99	46.207	ENSLAFG00000009299	SNAI2	99	46.575	Loxodonta_africana
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSMFAG00000046061	SNAI2	99	47.099	Macaca_fascicularis
MGP_PahariEiJ_G0023260	Snai3	100	72.355	ENSMFAG00000032064	SNAI3	100	72.355	Macaca_fascicularis
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSMMUG00000016195	SNAI2	99	47.099	Macaca_mulatta
MGP_PahariEiJ_G0023260	Snai3	100	72.355	ENSMMUG00000008716	SNAI3	100	72.355	Macaca_mulatta
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSMNEG00000034216	SNAI2	99	47.099	Macaca_nemestrina
MGP_PahariEiJ_G0023260	Snai3	100	72.355	ENSMNEG00000045515	SNAI3	100	72.355	Macaca_nemestrina
MGP_PahariEiJ_G0023260	Snai3	91	70.522	ENSMLEG00000033191	SNAI3	91	70.522	Mandrillus_leucophaeus
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSMLEG00000034407	SNAI2	99	47.099	Mandrillus_leucophaeus
MGP_PahariEiJ_G0023260	Snai3	100	86.806	ENSMAUG00000001685	Snai3	100	86.806	Mesocricetus_auratus
MGP_PahariEiJ_G0023260	Snai3	99	47.222	ENSMAUG00000008119	Snai2	99	46.780	Mesocricetus_auratus
MGP_PahariEiJ_G0023260	Snai3	100	87.153	ENSMOCG00000003536	Snai3	100	87.153	Microtus_ochrogaster
MGP_PahariEiJ_G0023260	Snai3	99	46.367	ENSMOCG00000006622	Snai2	99	46.441	Microtus_ochrogaster
MGP_PahariEiJ_G0023260	Snai3	99	48.123	ENSMODG00000010173	SNAI2	99	48.123	Monodelphis_domestica
MGP_PahariEiJ_G0023260	Snai3	100	94.444	MGP_CAROLIEiJ_G0031662	Snai3	100	94.444	Mus_caroli
MGP_PahariEiJ_G0023260	Snai3	99	47.059	MGP_CAROLIEiJ_G0020483	Snai2	99	47.099	Mus_caroli
MGP_PahariEiJ_G0023260	Snai3	100	95.833	ENSMUSG00000006587	Snai3	100	95.833	Mus_musculus
MGP_PahariEiJ_G0023260	Snai3	99	47.059	ENSMUSG00000022676	Snai2	99	47.099	Mus_musculus
MGP_PahariEiJ_G0023260	Snai3	99	47.059	MGP_SPRETEiJ_G0021379	Snai2	99	47.099	Mus_spretus
MGP_PahariEiJ_G0023260	Snai3	100	95.486	MGP_SPRETEiJ_G0032780	Snai3	100	95.486	Mus_spretus
MGP_PahariEiJ_G0023260	Snai3	99	46.713	ENSMPUG00000010793	SNAI2	99	46.441	Mustela_putorius_furo
MGP_PahariEiJ_G0023260	Snai3	100	61.433	ENSMPUG00000008104	SNAI3	100	63.481	Mustela_putorius_furo
MGP_PahariEiJ_G0023260	Snai3	99	46.713	ENSMLUG00000001086	SNAI2	99	46.441	Myotis_lucifugus
MGP_PahariEiJ_G0023260	Snai3	100	76.014	ENSNGAG00000023039	Snai3	100	76.014	Nannospalax_galili
MGP_PahariEiJ_G0023260	Snai3	100	71.672	ENSNLEG00000000595	SNAI3	100	73.720	Nomascus_leucogenys
MGP_PahariEiJ_G0023260	Snai3	99	46.207	ENSNLEG00000013421	SNAI2	99	47.440	Nomascus_leucogenys
MGP_PahariEiJ_G0023260	Snai3	98	47.387	ENSMEUG00000009510	SNAI2	100	47.387	Notamacropus_eugenii
MGP_PahariEiJ_G0023260	Snai3	99	46.897	ENSOANG00000007267	SNAI2	99	47.603	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0023260	Snai3	100	64.828	ENSOGAG00000000419	SNAI3	100	67.918	Otolemur_garnettii
MGP_PahariEiJ_G0023260	Snai3	99	46.552	ENSOARG00000013030	SNAI2	99	47.603	Ovis_aries
MGP_PahariEiJ_G0023260	Snai3	90	46.840	ENSOARG00000013069	-	99	46.840	Ovis_aries
MGP_PahariEiJ_G0023260	Snai3	100	70.648	ENSPPAG00000043301	SNAI3	100	72.696	Pan_paniscus
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSPPAG00000015662	SNAI2	99	47.099	Pan_paniscus
MGP_PahariEiJ_G0023260	Snai3	99	63.415	ENSPPRG00000008511	SNAI3	99	63.415	Panthera_pardus
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSPTRG00000020235	SNAI2	99	47.099	Pan_troglodytes
MGP_PahariEiJ_G0023260	Snai3	100	70.648	ENSPTRG00000008460	SNAI3	100	72.696	Pan_troglodytes
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSPANG00000017540	SNAI2	99	47.099	Papio_anubis
MGP_PahariEiJ_G0023260	Snai3	100	72.014	ENSPANG00000000509	SNAI3	100	72.014	Papio_anubis
MGP_PahariEiJ_G0023260	Snai3	99	48.675	ENSPKIG00000007872	SNAI3	99	48.675	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0023260	Snai3	99	45.424	ENSPKIG00000002254	SNAI2	99	46.735	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0023260	Snai3	76	59.307	ENSPSIG00000004262	SNAI3	91	59.307	Pelodiscus_sinensis
MGP_PahariEiJ_G0023260	Snai3	99	47.782	ENSPCIG00000025156	SNAI2	99	47.782	Phascolarctos_cinereus
MGP_PahariEiJ_G0023260	Snai3	100	70.307	ENSPPYG00000007643	SNAI3	100	72.355	Pongo_abelii
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSPPYG00000018578	SNAI2	99	47.099	Pongo_abelii
MGP_PahariEiJ_G0023260	Snai3	99	47.059	ENSPCOG00000015656	SNAI2	99	46.780	Propithecus_coquereli
MGP_PahariEiJ_G0023260	Snai3	100	90.972	ENSRNOG00000013586	Snai3	100	90.972	Rattus_norvegicus
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSRBIG00000041133	SNAI2	99	47.099	Rhinopithecus_bieti
MGP_PahariEiJ_G0023260	Snai3	100	72.355	ENSRBIG00000025770	SNAI3	100	72.355	Rhinopithecus_bieti
MGP_PahariEiJ_G0023260	Snai3	100	72.014	ENSRROG00000032757	SNAI3	100	72.014	Rhinopithecus_roxellana
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSRROG00000032273	SNAI2	99	47.099	Rhinopithecus_roxellana
MGP_PahariEiJ_G0023260	Snai3	99	45.862	ENSSBOG00000035774	SNAI2	99	47.099	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0023260	Snai3	99	47.782	ENSSHAG00000004205	SNAI2	99	47.782	Sarcophilus_harrisii
MGP_PahariEiJ_G0023260	Snai3	99	45.130	ENSSFOG00015016115	snai3	93	47.386	Scleropages_formosus
MGP_PahariEiJ_G0023260	Snai3	99	45.763	ENSSFOG00015018025	SNAI2	99	47.811	Scleropages_formosus
MGP_PahariEiJ_G0023260	Snai3	99	64.605	ENSTTRG00000006262	SNAI3	99	64.605	Tursiops_truncatus
MGP_PahariEiJ_G0023260	Snai3	100	66.212	ENSUAMG00000020030	SNAI3	100	67.918	Ursus_americanus
MGP_PahariEiJ_G0023260	Snai3	100	65.188	ENSVVUG00000003233	SNAI3	100	67.235	Vulpes_vulpes
MGP_PahariEiJ_G0023260	Snai3	99	46.713	ENSVVUG00000017625	SNAI2	99	46.441	Vulpes_vulpes
MGP_PahariEiJ_G0023260	Snai3	99	46.897	ENSXETG00000024006	snai2	99	46.897	Xenopus_tropicalis