EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0023268 (Gene tree)
Gene ID: 110337683
Gene Symbol: Pabpn1l
Alias: LOC382035|ePABP2
Full Name: poly(A) binding protein nuclear 1 like%2C cytoplasmic
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 3217 bases
Position: chr20:45807925-45811141
Accession: 110337683
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0054637	RRM_1	PF00076.22	2.6e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0054637	-	1140	XM_021220736	MGP_PahariEiJ_P0054637	273 (aa)	XP_021076395	UPI000A30B4C7

Gene Model

Click here to download MGP_PahariEiJ_G0023268's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0023268's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0023268	Pabpn1l	52	57.047	MGP_PahariEiJ_G0030295	Pabpn1	98	63.415
MGP_PahariEiJ_G0023268	Pabpn1l	52	57.047	MGP_PahariEiJ_G0030294	Gm20521	57	49.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0023268	Pabpn1l	100	67.025	ENSG00000205022	PABPN1L	100	67.384	Homo_sapiens
MGP_PahariEiJ_G0023268	Pabpn1l	57	51.923	ENSAPOG00000000685	PABPN1L	55	48.454	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0023268	Pabpn1l	58	50.633	ENSACIG00000021400	PABPN1L	82	52.096	Amphilophus_citrinellus
MGP_PahariEiJ_G0023268	Pabpn1l	64	46.286	ENSAPEG00000019534	PABPN1L	62	51.176	Amphiprion_percula
MGP_PahariEiJ_G0023268	Pabpn1l	71	57.653	ENSACAG00000013250	PABPN1L	100	57.653	Anolis_carolinensis
MGP_PahariEiJ_G0023268	Pabpn1l	100	63.177	ENSANAG00000038178	PABPN1L	100	64.260	Aotus_nancymaae
MGP_PahariEiJ_G0023268	Pabpn1l	57	51.282	ENSACLG00000025147	PABPN1L	68	46.377	Astatotilapia_calliptera
MGP_PahariEiJ_G0023268	Pabpn1l	58	54.430	ENSAMXG00000010873	PABPN1L	73	51.000	Astyanax_mexicanus
MGP_PahariEiJ_G0023268	Pabpn1l	100	63.441	ENSBTAG00000023752	-	100	64.516	Bos_taurus
MGP_PahariEiJ_G0023268	Pabpn1l	51	75.540	ENSBTAG00000006727	-	85	75.540	Bos_taurus
MGP_PahariEiJ_G0023268	Pabpn1l	100	62.182	ENSCJAG00000045284	PABPN1L	100	65.217	Callithrix_jacchus
MGP_PahariEiJ_G0023268	Pabpn1l	100	61.404	ENSCHIG00000013987	PABPN1L	100	61.404	Capra_hircus
MGP_PahariEiJ_G0023268	Pabpn1l	95	61.194	ENSCAPG00000007240	PABPN1L	100	61.624	Cavia_aperea
MGP_PahariEiJ_G0023268	Pabpn1l	100	62.774	ENSCPOG00000025951	PABPN1L	100	63.177	Cavia_porcellus
MGP_PahariEiJ_G0023268	Pabpn1l	100	63.538	ENSCCAG00000027631	PABPN1L	100	64.982	Cebus_capucinus
MGP_PahariEiJ_G0023268	Pabpn1l	100	65.455	ENSCATG00000031060	PABPN1L	100	67.391	Cercocebus_atys
MGP_PahariEiJ_G0023268	Pabpn1l	100	64.855	ENSCLAG00000000704	PABPN1L	100	64.855	Chinchilla_lanigera
MGP_PahariEiJ_G0023268	Pabpn1l	100	63.356	ENSCSAG00000002881	PABPN1L	100	64.384	Chlorocebus_sabaeus
MGP_PahariEiJ_G0023268	Pabpn1l	71	54.229	ENSCPBG00000023441	PABPN1L	61	56.122	Chrysemys_picta_bellii
MGP_PahariEiJ_G0023268	Pabpn1l	100	62.681	ENSCANG00000039336	PABPN1L	100	65.343	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0023268	Pabpn1l	100	80.000	ENSCGRG00001013211	Pabpn1l	100	80.364	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0023268	Pabpn1l	100	80.000	ENSCGRG00000015868	Pabpn1l	100	80.364	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0023268	Pabpn1l	100	51.237	ENSDNOG00000034677	PABPN1L	100	55.052	Dasypus_novemcinctus
MGP_PahariEiJ_G0023268	Pabpn1l	100	64.388	ENSEASG00005000777	PABPN1L	100	64.388	Equus_asinus_asinus
MGP_PahariEiJ_G0023268	Pabpn1l	100	64.748	ENSECAG00000000378	PABPN1L	100	64.748	Equus_caballus
MGP_PahariEiJ_G0023268	Pabpn1l	100	59.124	ENSEEUG00000004747	PABPN1L	100	59.124	Erinaceus_europaeus
MGP_PahariEiJ_G0023268	Pabpn1l	54	57.047	ENSELUG00000018385	PABPN1L	63	48.947	Esox_lucius
MGP_PahariEiJ_G0023268	Pabpn1l	100	64.516	ENSFCAG00000010465	PABPN1L	100	64.516	Felis_catus
MGP_PahariEiJ_G0023268	Pabpn1l	72	53.731	ENSFALG00000003319	PABPN1L	90	49.145	Ficedula_albicollis
MGP_PahariEiJ_G0023268	Pabpn1l	100	66.788	ENSFDAG00000021067	PABPN1L	100	66.788	Fukomys_damarensis
MGP_PahariEiJ_G0023268	Pabpn1l	59	50.000	ENSFHEG00000018295	PABPN1L	68	46.117	Fundulus_heteroclitus
MGP_PahariEiJ_G0023268	Pabpn1l	53	63.514	ENSGALG00000006242	PABPN1L	84	63.514	Gallus_gallus
MGP_PahariEiJ_G0023268	Pabpn1l	64	50.549	ENSGACG00000015428	PABPN1L	66	51.337	Gasterosteus_aculeatus
MGP_PahariEiJ_G0023268	Pabpn1l	68	55.676	ENSGAGG00000010613	PABPN1L	59	55.676	Gopherus_agassizii
MGP_PahariEiJ_G0023268	Pabpn1l	100	65.818	ENSGGOG00000012670	PABPN1L	100	67.754	Gorilla_gorilla
MGP_PahariEiJ_G0023268	Pabpn1l	79	43.519	ENSHBUG00000002388	PABPN1L	68	46.860	Haplochromis_burtoni
MGP_PahariEiJ_G0023268	Pabpn1l	96	65.649	ENSHGLG00000014207	PABPN1L	100	65.649	Heterocephalus_glaber_female
MGP_PahariEiJ_G0023268	Pabpn1l	96	65.649	ENSHGLG00100005230	PABPN1L	100	65.649	Heterocephalus_glaber_male
MGP_PahariEiJ_G0023268	Pabpn1l	100	64.875	ENSSTOG00000020814	PABPN1L	100	64.875	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0023268	Pabpn1l	100	69.091	ENSJJAG00000006433	Pabpn1l	100	69.091	Jaculus_jaculus
MGP_PahariEiJ_G0023268	Pabpn1l	64	46.857	ENSLBEG00000011647	PABPN1L	63	49.180	Labrus_bergylta
MGP_PahariEiJ_G0023268	Pabpn1l	71	60.714	ENSLAFG00000025902	-	78	60.714	Loxodonta_africana
MGP_PahariEiJ_G0023268	Pabpn1l	100	65.091	ENSMFAG00000002924	PABPN1L	100	67.029	Macaca_fascicularis
MGP_PahariEiJ_G0023268	Pabpn1l	100	64.727	ENSMMUG00000012438	PABPN1L	100	66.667	Macaca_mulatta
MGP_PahariEiJ_G0023268	Pabpn1l	100	65.091	ENSMNEG00000044808	PABPN1L	100	67.029	Macaca_nemestrina
MGP_PahariEiJ_G0023268	Pabpn1l	100	65.455	ENSMLEG00000032667	PABPN1L	100	67.391	Mandrillus_leucophaeus
MGP_PahariEiJ_G0023268	Pabpn1l	57	51.282	ENSMZEG00005002186	PABPN1L	68	46.377	Maylandia_zebra
MGP_PahariEiJ_G0023268	Pabpn1l	100	78.909	ENSMAUG00000014032	Pabpn1l	100	80.228	Mesocricetus_auratus
MGP_PahariEiJ_G0023268	Pabpn1l	100	66.182	ENSMICG00000028179	PABPN1L	100	66.182	Microcebus_murinus
MGP_PahariEiJ_G0023268	Pabpn1l	100	78.388	ENSMOCG00000007955	Pabpn1l	100	78.388	Microtus_ochrogaster
MGP_PahariEiJ_G0023268	Pabpn1l	99	51.273	ENSMODG00000003873	-	99	52.190	Monodelphis_domestica
MGP_PahariEiJ_G0023268	Pabpn1l	64	49.425	ENSMALG00000016926	PABPN1L	68	46.569	Monopterus_albus
MGP_PahariEiJ_G0023268	Pabpn1l	100	93.407	MGP_CAROLIEiJ_G0031670	Pabpn1l	100	93.407	Mus_caroli
MGP_PahariEiJ_G0023268	Pabpn1l	100	93.407	ENSMUSG00000069867	Pabpn1l	100	93.407	Mus_musculus
MGP_PahariEiJ_G0023268	Pabpn1l	100	93.040	MGP_SPRETEiJ_G0032788	Pabpn1l	100	93.040	Mus_spretus
MGP_PahariEiJ_G0023268	Pabpn1l	96	48.736	ENSMLUG00000003228	PABPN1L	95	48.736	Myotis_lucifugus
MGP_PahariEiJ_G0023268	Pabpn1l	100	76.642	ENSNGAG00000023992	Pabpn1l	100	76.642	Nannospalax_galili
MGP_PahariEiJ_G0023268	Pabpn1l	57	51.282	ENSNBRG00000017078	PABPN1L	69	48.438	Neolamprologus_brichardi
MGP_PahariEiJ_G0023268	Pabpn1l	100	66.787	ENSOPRG00000005597	PABPN1L	100	66.787	Ochotona_princeps
MGP_PahariEiJ_G0023268	Pabpn1l	100	57.692	ENSODEG00000004649	PABPN1L	100	57.692	Octodon_degus
MGP_PahariEiJ_G0023268	Pabpn1l	98	52.708	ENSOANG00000013901	PABPN1L	98	54.815	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0023268	Pabpn1l	71	51.282	ENSORLG00000026560	PABPN1L	71	51.282	Oryzias_latipes
MGP_PahariEiJ_G0023268	Pabpn1l	71	51.282	ENSORLG00020015068	PABPN1L	71	51.282	Oryzias_latipes_hni
MGP_PahariEiJ_G0023268	Pabpn1l	71	51.282	ENSORLG00015000397	PABPN1L	71	51.282	Oryzias_latipes_hsok
MGP_PahariEiJ_G0023268	Pabpn1l	71	49.231	ENSOMEG00000017896	PABPN1L	51	49.231	Oryzias_melastigma
MGP_PahariEiJ_G0023268	Pabpn1l	100	64.158	ENSOGAG00000000433	PABPN1L	100	64.158	Otolemur_garnettii
MGP_PahariEiJ_G0023268	Pabpn1l	100	61.056	ENSOARG00000013682	PABPN1L	100	62.376	Ovis_aries
MGP_PahariEiJ_G0023268	Pabpn1l	100	66.667	ENSPPAG00000028866	PABPN1L	100	67.025	Pan_paniscus
MGP_PahariEiJ_G0023268	Pabpn1l	100	64.516	ENSPPRG00000015106	PABPN1L	100	64.516	Panthera_pardus
MGP_PahariEiJ_G0023268	Pabpn1l	93	59.922	ENSPTIG00000015606	PABPN1L	100	59.922	Panthera_tigris_altaica
MGP_PahariEiJ_G0023268	Pabpn1l	100	66.667	ENSPTRG00000031120	PABPN1L	100	67.025	Pan_troglodytes
MGP_PahariEiJ_G0023268	Pabpn1l	100	65.091	ENSPANG00000026039	PABPN1L	100	67.029	Papio_anubis
MGP_PahariEiJ_G0023268	Pabpn1l	70	53.333	ENSPSIG00000003404	PABPN1L	100	54.634	Pelodiscus_sinensis
MGP_PahariEiJ_G0023268	Pabpn1l	100	78.467	ENSPEMG00000016624	Pabpn1l	100	78.467	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0023268	Pabpn1l	51	65.714	ENSPCIG00000007038	-	97	65.714	Phascolarctos_cinereus
MGP_PahariEiJ_G0023268	Pabpn1l	100	65.827	ENSPPYG00000007655	PABPN1L	100	67.384	Pongo_abelii
MGP_PahariEiJ_G0023268	Pabpn1l	100	64.364	ENSPCOG00000024077	PABPN1L	100	64.727	Propithecus_coquereli
MGP_PahariEiJ_G0023268	Pabpn1l	100	63.121	ENSPVAG00000002716	PABPN1L	100	64.184	Pteropus_vampyrus
MGP_PahariEiJ_G0023268	Pabpn1l	57	51.282	ENSPNYG00000004803	PABPN1L	68	46.377	Pundamilia_nyererei
MGP_PahariEiJ_G0023268	Pabpn1l	100	85.714	ENSRNOG00000029558	Pabpn1l	100	85.714	Rattus_norvegicus
MGP_PahariEiJ_G0023268	Pabpn1l	100	66.545	ENSRBIG00000030740	PABPN1L	100	68.478	Rhinopithecus_bieti
MGP_PahariEiJ_G0023268	Pabpn1l	100	67.754	ENSRROG00000032240	-	100	67.754	Rhinopithecus_roxellana
MGP_PahariEiJ_G0023268	Pabpn1l	99	64.599	ENSRROG00000035483	-	99	66.182	Rhinopithecus_roxellana
MGP_PahariEiJ_G0023268	Pabpn1l	100	63.406	ENSSBOG00000018410	PABPN1L	100	64.982	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0023268	Pabpn1l	99	48.070	ENSSHAG00000010001	-	99	49.315	Sarcophilus_harrisii
MGP_PahariEiJ_G0023268	Pabpn1l	90	53.061	ENSSARG00000005178	-	97	53.061	Sorex_araneus
MGP_PahariEiJ_G0023268	Pabpn1l	70	58.031	ENSSPUG00000007031	PABPN1L	84	58.247	Sphenodon_punctatus
MGP_PahariEiJ_G0023268	Pabpn1l	79	43.056	ENSSPAG00000017978	PABPN1L	68	45.631	Stegastes_partitus
MGP_PahariEiJ_G0023268	Pabpn1l	100	63.768	ENSSSCG00000036367	PABPN1L	100	64.855	Sus_scrofa
MGP_PahariEiJ_G0023268	Pabpn1l	64	46.961	ENSTRUG00000024725	PABPN1L	80	43.243	Takifugu_rubripes
MGP_PahariEiJ_G0023268	Pabpn1l	100	62.230	ENSTTRG00000004691	PABPN1L	100	64.516	Tursiops_truncatus
MGP_PahariEiJ_G0023268	Pabpn1l	54	51.948	ENSXETG00000011258	pabpn1l	89	48.500	Xenopus_tropicalis