EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0023326 (Gene tree)
Gene ID: 110337547
Gene Symbol: Tarbp1
Alias: Gm17296
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 51385 bases
Position: chr20:49497344-49548728
Accession: 110337547
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0054819	SpoU_methylase	PF00588.19	4.9e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0054819	-	5117	XM_021220522	MGP_PahariEiJ_P0054819	1581 (aa)	XP_021076181	UPI000A3086B5

Gene Model

Click here to download MGP_PahariEiJ_G0023326's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0023326's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0023326	Tarbp1	99	73.132	ENSG00000059588	TARBP1	99	73.070	Homo_sapiens
MGP_PahariEiJ_G0023326	Tarbp1	99	41.788	ENSAPOG00000016419	si:dkey-85a20.4	86	44.609	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0023326	Tarbp1	86	76.613	ENSAMEG00000003359	TARBP1	99	76.613	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0023326	Tarbp1	95	42.574	ENSATEG00000020266	si:dkey-85a20.4	94	42.574	Anabas_testudineus
MGP_PahariEiJ_G0023326	Tarbp1	85	62.144	ENSAPLG00000007666	TARBP1	99	62.833	Anas_platyrhynchos
MGP_PahariEiJ_G0023326	Tarbp1	98	54.098	ENSACAG00000001142	TARBP1	98	54.437	Anolis_carolinensis
MGP_PahariEiJ_G0023326	Tarbp1	87	73.290	ENSANAG00000022031	TARBP1	99	68.593	Aotus_nancymaae
MGP_PahariEiJ_G0023326	Tarbp1	99	71.561	ENSBTAG00000004517	TARBP1	99	76.218	Bos_taurus
MGP_PahariEiJ_G0023326	Tarbp1	99	72.435	ENSCJAG00000018155	TARBP1	99	72.497	Callithrix_jacchus
MGP_PahariEiJ_G0023326	Tarbp1	90	74.250	ENSCAFG00000011533	TARBP1	99	74.788	Canis_familiaris
MGP_PahariEiJ_G0023326	Tarbp1	99	71.667	ENSCAFG00020027141	TARBP1	99	72.222	Canis_lupus_dingo
MGP_PahariEiJ_G0023326	Tarbp1	99	71.049	ENSCHIG00000011437	TARBP1	99	71.358	Capra_hircus
MGP_PahariEiJ_G0023326	Tarbp1	83	75.324	ENSTSYG00000010382	TARBP1	97	75.476	Carlito_syrichta
MGP_PahariEiJ_G0023326	Tarbp1	81	67.396	ENSCAPG00000010831	TARBP1	99	67.762	Cavia_aperea
MGP_PahariEiJ_G0023326	Tarbp1	99	72.511	ENSCPOG00000013995	TARBP1	99	73.638	Cavia_porcellus
MGP_PahariEiJ_G0023326	Tarbp1	96	79.397	ENSCCAG00000037278	TARBP1	99	79.397	Cebus_capucinus
MGP_PahariEiJ_G0023326	Tarbp1	99	72.559	ENSCATG00000011754	TARBP1	99	72.868	Cercocebus_atys
MGP_PahariEiJ_G0023326	Tarbp1	85	77.252	ENSCLAG00000003655	TARBP1	99	77.405	Chinchilla_lanigera
MGP_PahariEiJ_G0023326	Tarbp1	81	76.503	ENSCSAG00000010100	TARBP1	99	76.503	Chlorocebus_sabaeus
MGP_PahariEiJ_G0023326	Tarbp1	94	60.956	ENSCPBG00000005587	TARBP1	98	60.956	Chrysemys_picta_bellii
MGP_PahariEiJ_G0023326	Tarbp1	86	76.475	ENSCANG00000034343	TARBP1	99	76.475	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0023326	Tarbp1	99	88.910	ENSCGRG00001016690	Tarbp1	99	88.910	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0023326	Tarbp1	93	88.550	ENSCGRG00000016893	Tarbp1	99	88.550	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0023326	Tarbp1	99	39.792	ENSCSEG00000005255	si:dkey-85a20.4	99	45.894	Cynoglossus_semilaevis
MGP_PahariEiJ_G0023326	Tarbp1	87	46.016	ENSDARG00000079055	si:dkey-85a20.4	99	55.190	Danio_rerio
MGP_PahariEiJ_G0023326	Tarbp1	99	70.321	ENSDNOG00000008637	TARBP1	99	70.521	Dasypus_novemcinctus
MGP_PahariEiJ_G0023326	Tarbp1	82	74.151	ENSDORG00000007984	Tarbp1	100	74.151	Dipodomys_ordii
MGP_PahariEiJ_G0023326	Tarbp1	100	73.482	ENSEASG00005000252	TARBP1	100	73.730	Equus_asinus_asinus
MGP_PahariEiJ_G0023326	Tarbp1	100	73.186	ENSECAG00000023673	TARBP1	100	74.863	Equus_caballus
MGP_PahariEiJ_G0023326	Tarbp1	99	41.094	ENSELUG00000012193	si:dkey-85a20.4	99	41.033	Esox_lucius
MGP_PahariEiJ_G0023326	Tarbp1	100	69.453	ENSFCAG00000014183	TARBP1	100	69.822	Felis_catus
MGP_PahariEiJ_G0023326	Tarbp1	82	63.198	ENSFALG00000013565	TARBP1	99	63.110	Ficedula_albicollis
MGP_PahariEiJ_G0023326	Tarbp1	81	73.704	ENSFDAG00000001308	TARBP1	99	73.857	Fukomys_damarensis
MGP_PahariEiJ_G0023326	Tarbp1	99	37.616	ENSFHEG00000007565	si:dkey-85a20.4	94	55.000	Fundulus_heteroclitus
MGP_PahariEiJ_G0023326	Tarbp1	85	43.836	ENSGMOG00000004549	si:dkey-85a20.4	98	43.908	Gadus_morhua
MGP_PahariEiJ_G0023326	Tarbp1	99	55.750	ENSGALG00000011000	TARBP1	99	56.269	Gallus_gallus
MGP_PahariEiJ_G0023326	Tarbp1	92	43.502	ENSGAFG00000007387	si:dkey-85a20.4	90	43.502	Gambusia_affinis
MGP_PahariEiJ_G0023326	Tarbp1	87	44.940	ENSGACG00000005865	si:dkey-85a20.4	99	45.011	Gasterosteus_aculeatus
MGP_PahariEiJ_G0023326	Tarbp1	99	62.132	ENSGAGG00000012102	TARBP1	99	62.383	Gopherus_agassizii
MGP_PahariEiJ_G0023326	Tarbp1	86	74.415	ENSGGOG00000022879	TARBP1	99	74.415	Gorilla_gorilla
MGP_PahariEiJ_G0023326	Tarbp1	87	45.564	ENSHBUG00000008877	si:dkey-85a20.4	85	45.564	Haplochromis_burtoni
MGP_PahariEiJ_G0023326	Tarbp1	99	74.076	ENSHGLG00000011592	TARBP1	99	74.765	Heterocephalus_glaber_female
MGP_PahariEiJ_G0023326	Tarbp1	97	74.844	ENSHGLG00100015169	TARBP1	99	74.879	Heterocephalus_glaber_male
MGP_PahariEiJ_G0023326	Tarbp1	87	42.591	ENSIPUG00000005249	si:dkey-85a20.4	83	42.582	Ictalurus_punctatus
MGP_PahariEiJ_G0023326	Tarbp1	90	74.462	ENSSTOG00000032291	TARBP1	99	74.610	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0023326	Tarbp1	95	74.822	ENSJJAG00000017840	Tarbp1	99	74.822	Jaculus_jaculus
MGP_PahariEiJ_G0023326	Tarbp1	79	47.248	ENSKMAG00000017546	si:dkey-85a20.4	81	47.248	Kryptolebias_marmoratus
MGP_PahariEiJ_G0023326	Tarbp1	67	48.939	ENSLBEG00000012132	si:dkey-85a20.4	89	48.939	Labrus_bergylta
MGP_PahariEiJ_G0023326	Tarbp1	99	48.472	ENSLACG00000004337	TARBP1	99	48.563	Latimeria_chalumnae
MGP_PahariEiJ_G0023326	Tarbp1	99	45.699	ENSLOCG00000016214	si:dkey-85a20.4	100	45.516	Lepisosteus_oculatus
MGP_PahariEiJ_G0023326	Tarbp1	96	70.335	ENSLAFG00000011394	TARBP1	99	71.419	Loxodonta_africana
MGP_PahariEiJ_G0023326	Tarbp1	99	70.974	ENSMFAG00000041068	TARBP1	99	71.099	Macaca_fascicularis
MGP_PahariEiJ_G0023326	Tarbp1	99	70.450	ENSMMUG00000021703	TARBP1	99	70.512	Macaca_mulatta
MGP_PahariEiJ_G0023326	Tarbp1	99	72.682	ENSMNEG00000045002	TARBP1	99	72.744	Macaca_nemestrina
MGP_PahariEiJ_G0023326	Tarbp1	85	76.314	ENSMLEG00000044182	TARBP1	99	76.314	Mandrillus_leucophaeus
MGP_PahariEiJ_G0023326	Tarbp1	92	44.135	ENSMAMG00000021760	si:dkey-85a20.4	92	44.135	Mastacembelus_armatus
MGP_PahariEiJ_G0023326	Tarbp1	87	45.551	ENSMZEG00005005751	si:dkey-85a20.4	85	45.551	Maylandia_zebra
MGP_PahariEiJ_G0023326	Tarbp1	100	87.611	ENSMAUG00000020968	Tarbp1	100	87.611	Mesocricetus_auratus
MGP_PahariEiJ_G0023326	Tarbp1	99	65.530	ENSMICG00000015280	TARBP1	99	66.047	Microcebus_murinus
MGP_PahariEiJ_G0023326	Tarbp1	100	87.097	ENSMOCG00000004128	Tarbp1	100	87.097	Microtus_ochrogaster
MGP_PahariEiJ_G0023326	Tarbp1	99	41.073	ENSMMOG00000007795	si:dkey-85a20.4	99	41.194	Mola_mola
MGP_PahariEiJ_G0023326	Tarbp1	99	64.109	ENSMODG00000008504	TARBP1	99	64.126	Monodelphis_domestica
MGP_PahariEiJ_G0023326	Tarbp1	99	41.600	ENSMALG00000002916	si:dkey-85a20.4	85	44.692	Monopterus_albus
MGP_PahariEiJ_G0023326	Tarbp1	100	95.509	MGP_CAROLIEiJ_G0031729	Tarbp1	100	95.509	Mus_caroli
MGP_PahariEiJ_G0023326	Tarbp1	100	95.572	ENSMUSG00000090290	Tarbp1	100	95.572	Mus_musculus
MGP_PahariEiJ_G0023326	Tarbp1	100	95.572	MGP_SPRETEiJ_G0032846	Tarbp1	100	95.572	Mus_spretus
MGP_PahariEiJ_G0023326	Tarbp1	78	75.242	ENSMPUG00000002802	TARBP1	99	75.242	Mustela_putorius_furo
MGP_PahariEiJ_G0023326	Tarbp1	87	71.201	ENSMLUG00000002414	TARBP1	99	71.201	Myotis_lucifugus
MGP_PahariEiJ_G0023326	Tarbp1	99	73.008	ENSNLEG00000002518	TARBP1	99	72.946	Nomascus_leucogenys
MGP_PahariEiJ_G0023326	Tarbp1	66	71.949	ENSMEUG00000011370	-	67	71.949	Notamacropus_eugenii
MGP_PahariEiJ_G0023326	Tarbp1	72	78.583	ENSOPRG00000013822	TARBP1	71	78.583	Ochotona_princeps
MGP_PahariEiJ_G0023326	Tarbp1	99	71.338	ENSODEG00000005238	TARBP1	99	71.465	Octodon_degus
MGP_PahariEiJ_G0023326	Tarbp1	87	45.070	ENSONIG00000009789	si:dkey-85a20.4	99	45.141	Oreochromis_niloticus
MGP_PahariEiJ_G0023326	Tarbp1	99	72.868	ENSOCUG00000017418	TARBP1	99	73.053	Oryctolagus_cuniculus
MGP_PahariEiJ_G0023326	Tarbp1	87	44.232	ENSORLG00000010529	si:dkey-85a20.4	85	44.232	Oryzias_latipes
MGP_PahariEiJ_G0023326	Tarbp1	87	44.161	ENSORLG00020019264	si:dkey-85a20.4	85	44.161	Oryzias_latipes_hni
MGP_PahariEiJ_G0023326	Tarbp1	87	43.949	ENSORLG00015003276	si:dkey-85a20.4	85	43.949	Oryzias_latipes_hsok
MGP_PahariEiJ_G0023326	Tarbp1	99	70.359	ENSOGAG00000002379	TARBP1	99	70.421	Otolemur_garnettii
MGP_PahariEiJ_G0023326	Tarbp1	90	73.357	ENSOARG00000003434	TARBP1	99	68.789	Ovis_aries
MGP_PahariEiJ_G0023326	Tarbp1	86	77.042	ENSPPAG00000028097	TARBP1	99	77.042	Pan_paniscus
MGP_PahariEiJ_G0023326	Tarbp1	100	68.221	ENSPPRG00000013561	TARBP1	100	68.221	Panthera_pardus
MGP_PahariEiJ_G0023326	Tarbp1	85	75.204	ENSPTIG00000009281	TARBP1	100	75.204	Panthera_tigris_altaica
MGP_PahariEiJ_G0023326	Tarbp1	99	72.901	ENSPTRG00000002124	TARBP1	99	72.963	Pan_troglodytes
MGP_PahariEiJ_G0023326	Tarbp1	99	72.930	ENSPANG00000021933	TARBP1	99	72.991	Papio_anubis
MGP_PahariEiJ_G0023326	Tarbp1	99	43.114	ENSPKIG00000016716	si:dkey-85a20.4	84	46.610	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0023326	Tarbp1	81	64.386	ENSPSIG00000010699	TARBP1	99	64.386	Pelodiscus_sinensis
MGP_PahariEiJ_G0023326	Tarbp1	99	88.936	ENSPEMG00000006888	Tarbp1	99	88.936	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0023326	Tarbp1	90	81.592	ENSPCIG00000029710	TARBP1	98	81.592	Phascolarctos_cinereus
MGP_PahariEiJ_G0023326	Tarbp1	87	44.381	ENSPFOG00000013020	si:dkey-85a20.4	99	44.452	Poecilia_formosa
MGP_PahariEiJ_G0023326	Tarbp1	87	44.216	ENSPLAG00000006044	si:dkey-85a20.4	85	44.287	Poecilia_latipinna
MGP_PahariEiJ_G0023326	Tarbp1	87	44.413	ENSPMEG00000017857	si:dkey-85a20.4	85	44.484	Poecilia_mexicana
MGP_PahariEiJ_G0023326	Tarbp1	87	44.713	ENSPREG00000022753	si:dkey-85a20.4	85	44.784	Poecilia_reticulata
MGP_PahariEiJ_G0023326	Tarbp1	90	75.725	ENSPPYG00000000102	TARBP1	99	75.656	Pongo_abelii
MGP_PahariEiJ_G0023326	Tarbp1	85	87.248	ENSPCAG00000004808	TARBP1	88	65.637	Procavia_capensis
MGP_PahariEiJ_G0023326	Tarbp1	99	70.254	ENSPCOG00000005666	TARBP1	99	70.686	Propithecus_coquereli
MGP_PahariEiJ_G0023326	Tarbp1	99	60.897	ENSPVAG00000014798	TARBP1	99	61.582	Pteropus_vampyrus
MGP_PahariEiJ_G0023326	Tarbp1	87	44.833	ENSPNYG00000019135	si:dkey-85a20.4	85	44.833	Pundamilia_nyererei
MGP_PahariEiJ_G0023326	Tarbp1	100	87.666	ENSRNOG00000053574	Tarbp1	100	87.666	Rattus_norvegicus
MGP_PahariEiJ_G0023326	Tarbp1	93	81.818	ENSRBIG00000043362	TARBP1	99	81.818	Rhinopithecus_bieti
MGP_PahariEiJ_G0023326	Tarbp1	99	70.938	ENSRROG00000029527	TARBP1	99	71.366	Rhinopithecus_roxellana
MGP_PahariEiJ_G0023326	Tarbp1	88	76.427	ENSSBOG00000034503	TARBP1	99	77.778	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0023326	Tarbp1	85	68.894	ENSSHAG00000000013	TARBP1	99	68.894	Sarcophilus_harrisii
MGP_PahariEiJ_G0023326	Tarbp1	86	44.957	ENSSFOG00015002660	si:dkey-85a20.4	97	46.137	Scleropages_formosus
MGP_PahariEiJ_G0023326	Tarbp1	86	45.565	ENSSMAG00000007081	si:dkey-85a20.4	82	45.747	Scophthalmus_maximus
MGP_PahariEiJ_G0023326	Tarbp1	99	41.202	ENSSDUG00000023566	si:dkey-85a20.4	99	41.274	Seriola_dumerili
MGP_PahariEiJ_G0023326	Tarbp1	87	45.314	ENSSLDG00000020200	si:dkey-85a20.4	86	45.250	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0023326	Tarbp1	89	77.367	ENSSARG00000012207	TARBP1	89	77.367	Sorex_araneus
MGP_PahariEiJ_G0023326	Tarbp1	99	59.490	ENSSPUG00000015364	TARBP1	99	59.814	Sphenodon_punctatus
MGP_PahariEiJ_G0023326	Tarbp1	95	42.830	ENSSPAG00000007213	si:dkey-85a20.4	94	42.830	Stegastes_partitus
MGP_PahariEiJ_G0023326	Tarbp1	99	72.373	ENSSSCG00000010160	TARBP1	99	72.435	Sus_scrofa
MGP_PahariEiJ_G0023326	Tarbp1	82	62.768	ENSTGUG00000010214	TARBP1	100	62.768	Taeniopygia_guttata
MGP_PahariEiJ_G0023326	Tarbp1	92	40.571	ENSTNIG00000016586	si:dkey-85a20.4	99	44.035	Tetraodon_nigroviridis
MGP_PahariEiJ_G0023326	Tarbp1	92	70.906	ENSTTRG00000008707	TARBP1	96	70.906	Tursiops_truncatus
MGP_PahariEiJ_G0023326	Tarbp1	84	75.883	ENSUMAG00000006730	TARBP1	99	75.883	Ursus_maritimus
MGP_PahariEiJ_G0023326	Tarbp1	72	86.869	ENSVPAG00000007665	TARBP1	80	85.149	Vicugna_pacos
MGP_PahariEiJ_G0023326	Tarbp1	89	73.562	ENSVVUG00000007460	TARBP1	99	73.852	Vulpes_vulpes
MGP_PahariEiJ_G0023326	Tarbp1	86	52.498	ENSXETG00000016224	tarbp1	99	52.498	Xenopus_tropicalis
MGP_PahariEiJ_G0023326	Tarbp1	80	48.435	ENSXCOG00000011779	si:dkey-85a20.4	93	48.571	Xiphophorus_couchianus
MGP_PahariEiJ_G0023326	Tarbp1	66	43.018	ENSXMAG00000009600	si:dkey-85a20.4	100	43.112	Xiphophorus_maculatus