EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0023414 (Gene tree)
Gene ID: 110338175
Gene Symbol: Chd1
Alias: 4930525N21Rik
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 1559307 bases
Position: chr21:11197698-12757004
Accession: 110337931
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0055124	ResIII	PF04851.15	8.7e-08	1	1
MGP_PahariEiJ_P0055123	ResIII	PF04851.15	5.7e-07	1	1
MGP_PahariEiJ_P0055129	RIO1	PF01163.22	8.3e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0055129	-	3296	-	MGP_PahariEiJ_P0055129	548 (aa)	XP_021077101	UPI000A310F76
MGP_PahariEiJ_T0055123	-	7890	XM_021221055	MGP_PahariEiJ_P0055123	1704 (aa)	XP_021076714	UPI000A30C976
MGP_PahariEiJ_T0055124	-	4098	-	MGP_PahariEiJ_P0055124	1081 (aa)	-	-
MGP_PahariEiJ_T0055125	-	1373	-	-	- (aa)	-	-
MGP_PahariEiJ_T0055126	-	1813	-	MGP_PahariEiJ_P0055126	515 (aa)	-	-
MGP_PahariEiJ_T0055127	-	657	-	MGP_PahariEiJ_P0055127	163 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0023414's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0023414's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0023414	Chd1	50	44.547	MGP_PahariEiJ_G0031579	Smarca1	69	43.580
MGP_PahariEiJ_G0023414	Chd1	95	65.431	MGP_PahariEiJ_G0013082	Chd2	88	60.370
MGP_PahariEiJ_G0023414	Chd1	53	43.847	MGP_PahariEiJ_G0026845	Chd1l	60	43.501
MGP_PahariEiJ_G0023414	Chd1	88	34.565	MGP_PahariEiJ_G0026048	Chd6	69	36.395

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0023414	Chd1	99	97.040	ENSG00000153922	CHD1	100	94.396	Homo_sapiens
MGP_PahariEiJ_G0023414	Chd1	75	85.294	ENSAPOG00000005764	chd1	98	82.078	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0023414	Chd1	88	76.606	ENSAOCG00000023105	chd1	92	77.480	Amphiprion_ocellaris
MGP_PahariEiJ_G0023414	Chd1	88	77.800	ENSAPEG00000013544	chd1	92	78.701	Amphiprion_percula
MGP_PahariEiJ_G0023414	Chd1	81	84.211	ENSAMXG00000010843	chd1	91	83.670	Astyanax_mexicanus
MGP_PahariEiJ_G0023414	Chd1	99	97.138	ENSCATG00000032035	CHD1	100	93.761	Cercocebus_atys
MGP_PahariEiJ_G0023414	Chd1	99	97.138	ENSCSAG00000015339	CHD1	100	93.703	Chlorocebus_sabaeus
MGP_PahariEiJ_G0023414	Chd1	93	83.019	ENSCPBG00000015831	CHD1	99	83.633	Chrysemys_picta_bellii
MGP_PahariEiJ_G0023414	Chd1	99	94.362	ENSCANG00000036916	CHD1	100	91.715	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0023414	Chd1	99	97.868	ENSCGRG00001023943	Chd1	100	96.318	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0023414	Chd1	99	97.868	ENSCGRG00000008652	Chd1	100	96.318	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0023414	Chd1	85	80.849	ENSCSEG00000009553	chd1	92	76.455	Cynoglossus_semilaevis
MGP_PahariEiJ_G0023414	Chd1	98	97.162	ENSEASG00005016110	CHD1	96	95.421	Equus_asinus_asinus
MGP_PahariEiJ_G0023414	Chd1	89	78.058	ENSELUG00000017677	chd1	93	77.137	Esox_lucius
MGP_PahariEiJ_G0023414	Chd1	82	83.503	ENSFHEG00000021164	chd1	89	80.082	Fundulus_heteroclitus
MGP_PahariEiJ_G0023414	Chd1	96	77.469	ENSGMOG00000001537	chd1	100	65.932	Gadus_morhua
MGP_PahariEiJ_G0023414	Chd1	91	87.819	ENSGALG00000031327	-	96	87.819	Gallus_gallus
MGP_PahariEiJ_G0023414	Chd1	91	88.418	ENSGAFG00000019880	chd1	95	82.407	Gambusia_affinis
MGP_PahariEiJ_G0023414	Chd1	98	97.366	ENSGGOG00000011463	CHD1	99	91.637	Gorilla_gorilla
MGP_PahariEiJ_G0023414	Chd1	88	78.723	ENSHCOG00000014222	chd1	91	78.715	Hippocampus_comes
MGP_PahariEiJ_G0023414	Chd1	87	81.720	ENSIPUG00000001369	chd1	92	81.427	Ictalurus_punctatus
MGP_PahariEiJ_G0023414	Chd1	94	94.675	ENSLAFG00000023183	CHD1	94	93.590	Loxodonta_africana
MGP_PahariEiJ_G0023414	Chd1	99	97.138	ENSMFAG00000031226	CHD1	100	93.703	Macaca_fascicularis
MGP_PahariEiJ_G0023414	Chd1	99	97.045	ENSMMUG00000014090	CHD1	99	95.921	Macaca_mulatta
MGP_PahariEiJ_G0023414	Chd1	99	97.048	ENSMNEG00000045073	CHD1	100	93.590	Macaca_nemestrina
MGP_PahariEiJ_G0023414	Chd1	96	90.638	ENSMLEG00000041096	CHD1	97	90.456	Mandrillus_leucophaeus
MGP_PahariEiJ_G0023414	Chd1	78	86.439	ENSMZEG00005010957	chd1	89	82.982	Maylandia_zebra
MGP_PahariEiJ_G0023414	Chd1	72	68.509	ENSMGAG00000008369	-	100	67.136	Meleagris_gallopavo
MGP_PahariEiJ_G0023414	Chd1	99	97.405	ENSMOCG00000019121	Chd1	100	93.783	Microtus_ochrogaster
MGP_PahariEiJ_G0023414	Chd1	70	95.132	ENSMODG00000019266	-	100	94.868	Monodelphis_domestica
MGP_PahariEiJ_G0023414	Chd1	94	78.963	ENSMALG00000013317	chd1	95	77.183	Monopterus_albus
MGP_PahariEiJ_G0023414	Chd1	100	99.075	MGP_CAROLIEiJ_G0021099	Chd1	100	99.075	Mus_caroli
MGP_PahariEiJ_G0023414	Chd1	100	99.260	ENSMUSG00000023852	Chd1	100	99.260	Mus_musculus
MGP_PahariEiJ_G0023414	Chd1	87	77.584	ENSNBRG00000006860	chd1	91	77.248	Neolamprologus_brichardi
MGP_PahariEiJ_G0023414	Chd1	98	97.086	ENSNLEG00000014493	CHD1	99	92.497	Nomascus_leucogenys
MGP_PahariEiJ_G0023414	Chd1	99	92.791	ENSOANG00000004891	CHD1	100	91.921	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0023414	Chd1	94	76.772	ENSORLG00015016725	chd1	93	78.187	Oryzias_latipes_hsok
MGP_PahariEiJ_G0023414	Chd1	100	91.919	ENSPPAG00000043367	CHD1	100	91.570	Pan_paniscus
MGP_PahariEiJ_G0023414	Chd1	99	97.132	ENSPTRG00000017103	CHD1	100	94.221	Pan_troglodytes
MGP_PahariEiJ_G0023414	Chd1	99	97.138	ENSPANG00000006387	CHD1	100	93.703	Papio_anubis
MGP_PahariEiJ_G0023414	Chd1	96	73.982	ENSPKIG00000024719	chd1	94	77.924	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0023414	Chd1	84	83.021	ENSPMGG00000005785	chd1	93	80.884	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0023414	Chd1	99	97.963	ENSPEMG00000015939	Chd1	100	96.379	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0023414	Chd1	78	75.976	ENSPLAG00000006473	-	85	76.841	Poecilia_latipinna
MGP_PahariEiJ_G0023414	Chd1	94	77.974	ENSPREG00000004209	chd1	97	73.510	Poecilia_reticulata
MGP_PahariEiJ_G0023414	Chd1	99	98.610	ENSRNOG00000014434	Chd1	99	98.165	Rattus_norvegicus
MGP_PahariEiJ_G0023414	Chd1	99	97.045	ENSRBIG00000044325	CHD1	100	92.595	Rhinopithecus_bieti
MGP_PahariEiJ_G0023414	Chd1	99	97.045	ENSRROG00000001726	CHD1	100	93.586	Rhinopithecus_roxellana
MGP_PahariEiJ_G0023414	Chd1	82	84.086	ENSSFOG00015007161	chd1	90	82.343	Scleropages_formosus
MGP_PahariEiJ_G0023414	Chd1	94	78.627	ENSSDUG00000018314	chd1	94	77.999	Seriola_dumerili
MGP_PahariEiJ_G0023414	Chd1	81	84.055	ENSSLDG00000017244	chd1	88	84.055	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0023414	Chd1	94	78.248	ENSSPAG00000007024	chd1	95	77.565	Stegastes_partitus
MGP_PahariEiJ_G0023414	Chd1	99	96.944	ENSSSCG00000014177	CHD1	100	96.276	Sus_scrofa
MGP_PahariEiJ_G0023414	Chd1	99	76.830	ENSTRUG00000010282	chd1	100	73.593	Takifugu_rubripes
MGP_PahariEiJ_G0023414	Chd1	94	77.712	ENSTNIG00000007101	chd1	100	78.903	Tetraodon_nigroviridis
MGP_PahariEiJ_G0023414	Chd1	94	77.876	ENSXCOG00000017184	chd1	97	71.107	Xiphophorus_couchianus
MGP_PahariEiJ_G0023414	Chd1	94	77.778	ENSXMAG00000014538	chd1	95	77.812	Xiphophorus_maculatus