EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0023562 (Gene tree)
Gene ID: 110338230
Gene Symbol: Rpusd1
Alias: 2310051D06Rik
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 3918 bases
Position: chr21:20673182-20677099
Accession: 110338230
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0055607	PseudoU_synth_2	PF00849.22	5e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0055607	-	1709	XM_021221507	MGP_PahariEiJ_P0055607	308 (aa)	XP_021077166	UPI000A3120E6

Gene Model

Click here to download MGP_PahariEiJ_G0023562's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0023562's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0023562	Rpusd1	99	80.386	ENSG00000007376	RPUSD1	100	87.500	Homo_sapiens
MGP_PahariEiJ_G0023562	Rpusd1	98	56.954	ENSAPOG00000022221	rpusd1	98	56.954	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0023562	Rpusd1	100	84.091	ENSAMEG00000007461	RPUSD1	100	82.468	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0023562	Rpusd1	98	57.516	ENSACIG00000015863	rpusd1	98	57.516	Amphilophus_citrinellus
MGP_PahariEiJ_G0023562	Rpusd1	98	57.049	ENSAOCG00000021975	rpusd1	95	56.393	Amphiprion_ocellaris
MGP_PahariEiJ_G0023562	Rpusd1	98	57.377	ENSAPEG00000001316	rpusd1	95	56.721	Amphiprion_percula
MGP_PahariEiJ_G0023562	Rpusd1	82	64.427	ENSATEG00000002984	rpusd1	98	57.605	Anabas_testudineus
MGP_PahariEiJ_G0023562	Rpusd1	77	59.583	ENSAPLG00000012316	RPUSD1	98	59.583	Anas_platyrhynchos
MGP_PahariEiJ_G0023562	Rpusd1	99	68.525	ENSACAG00000008953	RPUSD1	100	68.197	Anolis_carolinensis
MGP_PahariEiJ_G0023562	Rpusd1	99	81.672	ENSANAG00000024709	RPUSD1	100	81.090	Aotus_nancymaae
MGP_PahariEiJ_G0023562	Rpusd1	98	55.486	ENSACLG00000013692	rpusd1	98	57.003	Astatotilapia_calliptera
MGP_PahariEiJ_G0023562	Rpusd1	99	57.742	ENSAMXG00000019802	rpusd1	100	58.361	Astyanax_mexicanus
MGP_PahariEiJ_G0023562	Rpusd1	100	83.226	ENSBTAG00000000179	RPUSD1	100	83.226	Bos_taurus
MGP_PahariEiJ_G0023562	Rpusd1	99	81.672	ENSCJAG00000012253	RPUSD1	100	80.892	Callithrix_jacchus
MGP_PahariEiJ_G0023562	Rpusd1	99	84.590	ENSCAFG00000019614	RPUSD1	99	84.918	Canis_familiaris
MGP_PahariEiJ_G0023562	Rpusd1	99	84.590	ENSCAFG00020008891	RPUSD1	99	84.918	Canis_lupus_dingo
MGP_PahariEiJ_G0023562	Rpusd1	100	83.226	ENSCHIG00000012872	RPUSD1	100	83.226	Capra_hircus
MGP_PahariEiJ_G0023562	Rpusd1	99	83.279	ENSTSYG00000036934	RPUSD1	99	81.230	Carlito_syrichta
MGP_PahariEiJ_G0023562	Rpusd1	100	87.662	ENSCAPG00000014219	RPUSD1	100	87.662	Cavia_aperea
MGP_PahariEiJ_G0023562	Rpusd1	100	87.662	ENSCPOG00000034604	RPUSD1	100	87.662	Cavia_porcellus
MGP_PahariEiJ_G0023562	Rpusd1	99	82.201	ENSCCAG00000034385	RPUSD1	100	81.410	Cebus_capucinus
MGP_PahariEiJ_G0023562	Rpusd1	99	81.994	ENSCATG00000042983	RPUSD1	100	81.210	Cercocebus_atys
MGP_PahariEiJ_G0023562	Rpusd1	100	85.714	ENSCLAG00000013966	RPUSD1	100	85.714	Chinchilla_lanigera
MGP_PahariEiJ_G0023562	Rpusd1	99	81.994	ENSCSAG00000012121	RPUSD1	100	81.210	Chlorocebus_sabaeus
MGP_PahariEiJ_G0023562	Rpusd1	99	65.902	ENSCPBG00000021101	RPUSD1	99	65.461	Chrysemys_picta_bellii
MGP_PahariEiJ_G0023562	Rpusd1	92	84.099	ENSCANG00000028576	RPUSD1	97	85.091	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0023562	Rpusd1	100	90.909	ENSCGRG00001014253	Rpusd1	100	90.909	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0023562	Rpusd1	100	90.909	ENSCGRG00000017995	Rpusd1	100	90.909	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0023562	Rpusd1	99	55.519	ENSCSEG00000018512	rpusd1	100	55.738	Cynoglossus_semilaevis
MGP_PahariEiJ_G0023562	Rpusd1	98	57.475	ENSCVAG00000022746	rpusd1	98	57.475	Cyprinodon_variegatus
MGP_PahariEiJ_G0023562	Rpusd1	99	61.967	ENSDARG00000060192	rpusd1	100	61.639	Danio_rerio
MGP_PahariEiJ_G0023562	Rpusd1	100	77.918	ENSDNOG00000003721	RPUSD1	100	78.662	Dasypus_novemcinctus
MGP_PahariEiJ_G0023562	Rpusd1	100	86.364	ENSDORG00000026656	Rpusd1	100	87.013	Dipodomys_ordii
MGP_PahariEiJ_G0023562	Rpusd1	98	44.308	ENSEBUG00000008767	rpusd1	93	44.828	Eptatretus_burgeri
MGP_PahariEiJ_G0023562	Rpusd1	99	81.905	ENSEASG00005018421	RPUSD1	76	81.447	Equus_asinus_asinus
MGP_PahariEiJ_G0023562	Rpusd1	82	60.630	ENSELUG00000014307	rpusd1	88	54.098	Esox_lucius
MGP_PahariEiJ_G0023562	Rpusd1	100	81.818	ENSFCAG00000010359	RPUSD1	100	81.494	Felis_catus
MGP_PahariEiJ_G0023562	Rpusd1	99	66.775	ENSFALG00000003211	RPUSD1	100	66.230	Ficedula_albicollis
MGP_PahariEiJ_G0023562	Rpusd1	100	86.688	ENSFDAG00000013398	RPUSD1	100	86.688	Fukomys_damarensis
MGP_PahariEiJ_G0023562	Rpusd1	98	56.766	ENSFHEG00000004736	rpusd1	98	56.766	Fundulus_heteroclitus
MGP_PahariEiJ_G0023562	Rpusd1	82	62.451	ENSGMOG00000010756	rpusd1	98	54.934	Gadus_morhua
MGP_PahariEiJ_G0023562	Rpusd1	99	65.595	ENSGALG00000005315	RPUSD1	100	65.273	Gallus_gallus
MGP_PahariEiJ_G0023562	Rpusd1	98	58.140	ENSGAFG00000009886	rpusd1	98	58.033	Gambusia_affinis
MGP_PahariEiJ_G0023562	Rpusd1	81	63.745	ENSGACG00000014276	rpusd1	97	57.096	Gasterosteus_aculeatus
MGP_PahariEiJ_G0023562	Rpusd1	99	65.902	ENSGAGG00000004181	RPUSD1	99	65.461	Gopherus_agassizii
MGP_PahariEiJ_G0023562	Rpusd1	99	80.064	ENSGGOG00000013997	RPUSD1	100	79.299	Gorilla_gorilla
MGP_PahariEiJ_G0023562	Rpusd1	98	55.172	ENSHBUG00000023728	rpusd1	98	56.678	Haplochromis_burtoni
MGP_PahariEiJ_G0023562	Rpusd1	100	86.364	ENSHGLG00000002595	RPUSD1	100	86.364	Heterocephalus_glaber_female
MGP_PahariEiJ_G0023562	Rpusd1	100	86.364	ENSHGLG00100014303	RPUSD1	100	86.364	Heterocephalus_glaber_male
MGP_PahariEiJ_G0023562	Rpusd1	98	57.096	ENSHCOG00000002390	rpusd1	99	56.766	Hippocampus_comes
MGP_PahariEiJ_G0023562	Rpusd1	99	60.784	ENSIPUG00000001570	rpusd1	99	60.784	Ictalurus_punctatus
MGP_PahariEiJ_G0023562	Rpusd1	100	87.662	ENSSTOG00000004276	RPUSD1	100	87.662	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0023562	Rpusd1	100	89.935	ENSJJAG00000015696	Rpusd1	100	89.935	Jaculus_jaculus
MGP_PahariEiJ_G0023562	Rpusd1	98	56.811	ENSKMAG00000017287	rpusd1	98	56.811	Kryptolebias_marmoratus
MGP_PahariEiJ_G0023562	Rpusd1	98	57.049	ENSLBEG00000013354	RPUSD1	98	57.049	Labrus_bergylta
MGP_PahariEiJ_G0023562	Rpusd1	98	57.049	ENSLBEG00000022502	rpusd1	98	57.049	Labrus_bergylta
MGP_PahariEiJ_G0023562	Rpusd1	99	62.171	ENSLACG00000008869	RPUSD1	99	61.842	Latimeria_chalumnae
MGP_PahariEiJ_G0023562	Rpusd1	70	73.611	ENSLOCG00000005682	rpusd1	99	73.611	Lepisosteus_oculatus
MGP_PahariEiJ_G0023562	Rpusd1	99	81.967	ENSLAFG00000002115	RPUSD1	100	81.169	Loxodonta_africana
MGP_PahariEiJ_G0023562	Rpusd1	99	82.315	ENSMFAG00000003961	RPUSD1	100	81.529	Macaca_fascicularis
MGP_PahariEiJ_G0023562	Rpusd1	99	82.315	ENSMMUG00000000842	RPUSD1	100	81.529	Macaca_mulatta
MGP_PahariEiJ_G0023562	Rpusd1	99	82.315	ENSMNEG00000042712	RPUSD1	100	81.529	Macaca_nemestrina
MGP_PahariEiJ_G0023562	Rpusd1	99	82.315	ENSMLEG00000030591	RPUSD1	100	81.529	Mandrillus_leucophaeus
MGP_PahariEiJ_G0023562	Rpusd1	82	64.427	ENSMAMG00000004735	rpusd1	98	58.170	Mastacembelus_armatus
MGP_PahariEiJ_G0023562	Rpusd1	98	55.486	ENSMZEG00005003214	rpusd1	98	57.003	Maylandia_zebra
MGP_PahariEiJ_G0023562	Rpusd1	97	64.706	ENSMGAG00000005447	RPUSD1	99	65.000	Meleagris_gallopavo
MGP_PahariEiJ_G0023562	Rpusd1	85	86.466	ENSMAUG00000019998	Rpusd1	98	86.538	Mesocricetus_auratus
MGP_PahariEiJ_G0023562	Rpusd1	100	83.819	ENSMICG00000017561	RPUSD1	100	81.191	Microcebus_murinus
MGP_PahariEiJ_G0023562	Rpusd1	99	94.098	ENSMOCG00000014082	Rpusd1	100	93.182	Microtus_ochrogaster
MGP_PahariEiJ_G0023562	Rpusd1	78	66.667	ENSMMOG00000012569	rpusd1	99	57.285	Mola_mola
MGP_PahariEiJ_G0023562	Rpusd1	100	71.935	ENSMODG00000016882	RPUSD1	100	71.521	Monodelphis_domestica
MGP_PahariEiJ_G0023562	Rpusd1	98	57.516	ENSMALG00000017818	rpusd1	98	57.190	Monopterus_albus
MGP_PahariEiJ_G0023562	Rpusd1	100	97.078	MGP_CAROLIEiJ_G0021244	Rpusd1	100	97.078	Mus_caroli
MGP_PahariEiJ_G0023562	Rpusd1	100	97.403	ENSMUSG00000041199	Rpusd1	100	97.403	Mus_musculus
MGP_PahariEiJ_G0023562	Rpusd1	100	97.403	MGP_SPRETEiJ_G0022155	Rpusd1	100	97.403	Mus_spretus
MGP_PahariEiJ_G0023562	Rpusd1	100	81.494	ENSMPUG00000015897	RPUSD1	100	82.792	Mustela_putorius_furo
MGP_PahariEiJ_G0023562	Rpusd1	100	84.076	ENSMLUG00000001089	RPUSD1	100	83.439	Myotis_lucifugus
MGP_PahariEiJ_G0023562	Rpusd1	100	91.234	ENSNGAG00000003595	Rpusd1	100	91.234	Nannospalax_galili
MGP_PahariEiJ_G0023562	Rpusd1	98	51.097	ENSNBRG00000006457	rpusd1	98	58.609	Neolamprologus_brichardi
MGP_PahariEiJ_G0023562	Rpusd1	55	76.437	ENSNLEG00000008424	-	100	75.141	Nomascus_leucogenys
MGP_PahariEiJ_G0023562	Rpusd1	100	69.968	ENSMEUG00000016049	RPUSD1	100	70.455	Notamacropus_eugenii
MGP_PahariEiJ_G0023562	Rpusd1	99	77.049	ENSOPRG00000008340	RPUSD1	99	76.393	Ochotona_princeps
MGP_PahariEiJ_G0023562	Rpusd1	100	84.091	ENSODEG00000016945	RPUSD1	100	84.091	Octodon_degus
MGP_PahariEiJ_G0023562	Rpusd1	98	54.859	ENSONIG00000015672	rpusd1	99	56.352	Oreochromis_niloticus
MGP_PahariEiJ_G0023562	Rpusd1	99	57.566	ENSORLG00000013009	rpusd1	99	57.566	Oryzias_latipes
MGP_PahariEiJ_G0023562	Rpusd1	99	57.237	ENSORLG00020010382	rpusd1	99	57.237	Oryzias_latipes_hni
MGP_PahariEiJ_G0023562	Rpusd1	99	56.579	ENSORLG00015021354	rpusd1	99	56.579	Oryzias_latipes_hsok
MGP_PahariEiJ_G0023562	Rpusd1	98	57.143	ENSOMEG00000021426	rpusd1	98	57.143	Oryzias_melastigma
MGP_PahariEiJ_G0023562	Rpusd1	100	85.987	ENSOGAG00000003795	RPUSD1	100	85.350	Otolemur_garnettii
MGP_PahariEiJ_G0023562	Rpusd1	100	82.903	ENSOARG00000014254	RPUSD1	100	82.903	Ovis_aries
MGP_PahariEiJ_G0023562	Rpusd1	99	80.064	ENSPPAG00000034797	RPUSD1	100	79.299	Pan_paniscus
MGP_PahariEiJ_G0023562	Rpusd1	100	81.494	ENSPPRG00000012389	RPUSD1	100	81.169	Panthera_pardus
MGP_PahariEiJ_G0023562	Rpusd1	100	81.494	ENSPTIG00000008545	RPUSD1	92	81.169	Panthera_tigris_altaica
MGP_PahariEiJ_G0023562	Rpusd1	99	80.064	ENSPTRG00000007565	RPUSD1	100	79.299	Pan_troglodytes
MGP_PahariEiJ_G0023562	Rpusd1	99	81.672	ENSPANG00000024401	RPUSD1	100	80.892	Papio_anubis
MGP_PahariEiJ_G0023562	Rpusd1	99	60.000	ENSPKIG00000018890	rpusd1	91	59.032	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0023562	Rpusd1	99	67.427	ENSPSIG00000013945	RPUSD1	100	66.557	Pelodiscus_sinensis
MGP_PahariEiJ_G0023562	Rpusd1	99	57.143	ENSPMGG00000014950	rpusd1	99	56.818	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0023562	Rpusd1	100	93.506	ENSPEMG00000000497	Rpusd1	100	93.506	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0023562	Rpusd1	98	50.329	ENSPMAG00000001563	rpusd1	99	49.671	Petromyzon_marinus
MGP_PahariEiJ_G0023562	Rpusd1	100	71.753	ENSPCIG00000021216	-	94	71.429	Phascolarctos_cinereus
MGP_PahariEiJ_G0023562	Rpusd1	98	58.689	ENSPFOG00000007946	rpusd1	98	57.705	Poecilia_formosa
MGP_PahariEiJ_G0023562	Rpusd1	98	58.689	ENSPLAG00000011925	rpusd1	98	57.705	Poecilia_latipinna
MGP_PahariEiJ_G0023562	Rpusd1	98	58.361	ENSPMEG00000002910	rpusd1	98	57.377	Poecilia_mexicana
MGP_PahariEiJ_G0023562	Rpusd1	98	58.804	ENSPREG00000019851	rpusd1	98	58.689	Poecilia_reticulata
MGP_PahariEiJ_G0023562	Rpusd1	99	66.230	ENSPCAG00000002258	RPUSD1	100	65.260	Procavia_capensis
MGP_PahariEiJ_G0023562	Rpusd1	100	84.713	ENSPCOG00000022582	RPUSD1	100	85.032	Propithecus_coquereli
MGP_PahariEiJ_G0023562	Rpusd1	100	81.210	ENSPVAG00000013104	RPUSD1	100	81.210	Pteropus_vampyrus
MGP_PahariEiJ_G0023562	Rpusd1	98	58.140	ENSPNYG00000024076	rpusd1	98	58.140	Pundamilia_nyererei
MGP_PahariEiJ_G0023562	Rpusd1	99	58.033	ENSPNAG00000013806	rpusd1	100	58.033	Pygocentrus_nattereri
MGP_PahariEiJ_G0023562	Rpusd1	100	95.455	ENSRNOG00000023639	Rpusd1	100	95.455	Rattus_norvegicus
MGP_PahariEiJ_G0023562	Rpusd1	99	81.994	ENSRBIG00000030238	RPUSD1	100	81.210	Rhinopithecus_bieti
MGP_PahariEiJ_G0023562	Rpusd1	99	81.994	ENSRROG00000036663	RPUSD1	100	81.210	Rhinopithecus_roxellana
MGP_PahariEiJ_G0023562	Rpusd1	99	81.967	ENSSBOG00000033063	RPUSD1	100	81.877	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0023562	Rpusd1	100	70.779	ENSSHAG00000013500	RPUSD1	100	70.455	Sarcophilus_harrisii
MGP_PahariEiJ_G0023562	Rpusd1	99	61.513	ENSSFOG00015014394	rpusd1	99	61.184	Scleropages_formosus
MGP_PahariEiJ_G0023562	Rpusd1	98	57.377	ENSSMAG00000008045	rpusd1	91	57.377	Scophthalmus_maximus
MGP_PahariEiJ_G0023562	Rpusd1	82	66.008	ENSSDUG00000001829	rpusd1	95	58.689	Seriola_dumerili
MGP_PahariEiJ_G0023562	Rpusd1	82	66.008	ENSSLDG00000020853	rpusd1	95	58.689	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0023562	Rpusd1	54	87.425	ENSSARG00000011187	-	100	87.425	Sorex_araneus
MGP_PahariEiJ_G0023562	Rpusd1	63	54.639	ENSSPUG00000005119	-	100	53.608	Sphenodon_punctatus
MGP_PahariEiJ_G0023562	Rpusd1	98	58.689	ENSSPAG00000012708	rpusd1	98	58.361	Stegastes_partitus
MGP_PahariEiJ_G0023562	Rpusd1	100	81.529	ENSSSCG00000008000	RPUSD1	98	86.614	Sus_scrofa
MGP_PahariEiJ_G0023562	Rpusd1	83	75.294	ENSTGUG00000015375	RPUSD1	100	75.294	Taeniopygia_guttata
MGP_PahariEiJ_G0023562	Rpusd1	98	56.209	ENSTRUG00000003041	rpusd1	98	56.209	Takifugu_rubripes
MGP_PahariEiJ_G0023562	Rpusd1	98	53.642	ENSTNIG00000002660	rpusd1	99	53.642	Tetraodon_nigroviridis
MGP_PahariEiJ_G0023562	Rpusd1	99	84.244	ENSTTRG00000010167	RPUSD1	100	81.847	Tursiops_truncatus
MGP_PahariEiJ_G0023562	Rpusd1	100	83.117	ENSUAMG00000012736	RPUSD1	100	83.442	Ursus_americanus
MGP_PahariEiJ_G0023562	Rpusd1	100	83.117	ENSUMAG00000021174	RPUSD1	100	83.442	Ursus_maritimus
MGP_PahariEiJ_G0023562	Rpusd1	99	83.607	ENSVVUG00000012357	RPUSD1	99	83.607	Vulpes_vulpes
MGP_PahariEiJ_G0023562	Rpusd1	100	60.390	ENSXETG00000007184	rpusd1	100	60.390	Xenopus_tropicalis
MGP_PahariEiJ_G0023562	Rpusd1	98	58.033	ENSXCOG00000017930	rpusd1	98	57.377	Xiphophorus_couchianus
MGP_PahariEiJ_G0023562	Rpusd1	98	58.361	ENSXMAG00000024084	rpusd1	98	57.705	Xiphophorus_maculatus