EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0023933 (Gene tree)
Gene ID: 110338786
Gene Symbol: Rad54b
Alias: E130016E03Rik
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 68461 bases
Position: chr22:20638826-20707286
Accession: 110338786
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0057125	ResIII	PF04851.15	3.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0057128	-	801	-	MGP_PahariEiJ_P0057128	155 (aa)	-	-
MGP_PahariEiJ_T0057129	-	723	-	-	- (aa)	-	-
MGP_PahariEiJ_T0057122	-	434	-	-	- (aa)	-	-
MGP_PahariEiJ_T0057123	-	2613	-	MGP_PahariEiJ_P0057123	98 (aa)	-	-
MGP_PahariEiJ_T0057126	-	442	-	-	- (aa)	-	-
MGP_PahariEiJ_T0057124	-	654	-	MGP_PahariEiJ_P0057124	93 (aa)	-	-
MGP_PahariEiJ_T0057125	-	2864	XM_021222231	MGP_PahariEiJ_P0057125	884 (aa)	XP_021077890	-

Gene Model

Click here to download MGP_PahariEiJ_G0023933's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0023933's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0023933	Rad54b	57	30.350	MGP_PahariEiJ_G0026845	Chd1l	51	30.116
MGP_PahariEiJ_G0023933	Rad54b	57	33.658	MGP_PahariEiJ_G0031579	Smarca1	61	32.381
MGP_PahariEiJ_G0023933	Rad54b	76	45.036	MGP_PahariEiJ_G0028657	Rad54l	88	45.036

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0023933	Rad54b	99	78.744	ENSG00000197275	RAD54B	99	78.744	Homo_sapiens
MGP_PahariEiJ_G0023933	Rad54b	81	83.679	ENSG00000265817	FSBP	99	83.679	Homo_sapiens
MGP_PahariEiJ_G0023933	Rad54b	100	79.299	ENSAMEG00000005834	-	100	79.299	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0023933	Rad54b	99	54.939	ENSACIG00000013005	rad54b	99	54.939	Amphilophus_citrinellus
MGP_PahariEiJ_G0023933	Rad54b	99	54.790	ENSAOCG00000008523	rad54b	99	54.790	Amphiprion_ocellaris
MGP_PahariEiJ_G0023933	Rad54b	99	55.045	ENSAPEG00000001673	rad54b	99	55.045	Amphiprion_percula
MGP_PahariEiJ_G0023933	Rad54b	99	55.072	ENSATEG00000001527	rad54b	99	55.072	Anabas_testudineus
MGP_PahariEiJ_G0023933	Rad54b	99	66.667	ENSAPLG00000014366	-	99	66.667	Anas_platyrhynchos
MGP_PahariEiJ_G0023933	Rad54b	89	68.867	ENSACAG00000003671	-	99	68.867	Anolis_carolinensis
MGP_PahariEiJ_G0023933	Rad54b	73	83.025	ENSANAG00000019528	-	99	83.025	Aotus_nancymaae
MGP_PahariEiJ_G0023933	Rad54b	99	55.840	ENSACLG00000007826	rad54b	99	55.729	Astatotilapia_calliptera
MGP_PahariEiJ_G0023933	Rad54b	87	57.541	ENSAMXG00000039985	rad54b	94	57.305	Astyanax_mexicanus
MGP_PahariEiJ_G0023933	Rad54b	100	76.729	ENSBTAG00000000632	RAD54B	100	76.729	Bos_taurus
MGP_PahariEiJ_G0023933	Rad54b	80	34.877	WBGene00013792	Y116A8C.13	83	34.853	Caenorhabditis_elegans
MGP_PahariEiJ_G0023933	Rad54b	99	77.643	ENSCJAG00000000080	-	99	82.158	Callithrix_jacchus
MGP_PahariEiJ_G0023933	Rad54b	100	77.766	ENSCAFG00000009179	RAD54B	99	77.766	Canis_familiaris
MGP_PahariEiJ_G0023933	Rad54b	100	77.547	ENSCAFG00020012084	-	99	77.547	Canis_lupus_dingo
MGP_PahariEiJ_G0023933	Rad54b	100	76.948	ENSCHIG00000008230	-	100	76.948	Capra_hircus
MGP_PahariEiJ_G0023933	Rad54b	100	79.011	ENSTSYG00000013234	-	100	79.011	Carlito_syrichta
MGP_PahariEiJ_G0023933	Rad54b	99	78.038	ENSCPOG00000011643	-	99	78.038	Cavia_porcellus
MGP_PahariEiJ_G0023933	Rad54b	100	77.888	ENSCCAG00000011754	-	99	82.044	Cebus_capucinus
MGP_PahariEiJ_G0023933	Rad54b	99	78.524	ENSCATG00000030661	-	99	83.541	Cercocebus_atys
MGP_PahariEiJ_G0023933	Rad54b	99	80.968	ENSCLAG00000010476	-	99	80.968	Chinchilla_lanigera
MGP_PahariEiJ_G0023933	Rad54b	99	78.658	ENSCSAG00000012712	-	99	78.658	Chlorocebus_sabaeus
MGP_PahariEiJ_G0023933	Rad54b	99	66.306	ENSCPBG00000003204	-	99	66.823	Chrysemys_picta_bellii
MGP_PahariEiJ_G0023933	Rad54b	99	78.855	ENSCANG00000017939	-	99	83.817	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0023933	Rad54b	100	85.746	ENSCGRG00001020184	Rad54b	100	85.746	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0023933	Rad54b	100	84.305	ENSCGRG00000016752	Rad54b	100	84.305	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0023933	Rad54b	99	55.381	ENSCSEG00000001601	rad54b	99	55.381	Cynoglossus_semilaevis
MGP_PahariEiJ_G0023933	Rad54b	99	56.826	ENSCVAG00000009200	rad54b	99	56.937	Cyprinodon_variegatus
MGP_PahariEiJ_G0023933	Rad54b	100	53.073	ENSDARG00000092134	rad54b	100	59.877	Danio_rerio
MGP_PahariEiJ_G0023933	Rad54b	99	76.123	ENSDNOG00000015535	-	99	76.123	Dasypus_novemcinctus
MGP_PahariEiJ_G0023933	Rad54b	100	79.438	ENSDORG00000002492	Rad54b	100	79.663	Dipodomys_ordii
MGP_PahariEiJ_G0023933	Rad54b	86	76.628	ENSETEG00000010605	-	100	76.628	Echinops_telfairi
MGP_PahariEiJ_G0023933	Rad54b	100	46.659	ENSEBUG00000009104	rad54b	99	46.659	Eptatretus_burgeri
MGP_PahariEiJ_G0023933	Rad54b	97	77.778	ENSEASG00005004021	-	99	77.778	Equus_asinus_asinus
MGP_PahariEiJ_G0023933	Rad54b	100	78.266	ENSECAG00000021949	-	99	78.266	Equus_caballus
MGP_PahariEiJ_G0023933	Rad54b	82	79.503	ENSEEUG00000008056	-	81	79.503	Erinaceus_europaeus
MGP_PahariEiJ_G0023933	Rad54b	99	52.386	ENSELUG00000009287	rad54b	99	52.598	Esox_lucius
MGP_PahariEiJ_G0023933	Rad54b	100	79.167	ENSFCAG00000015513	-	100	83.333	Felis_catus
MGP_PahariEiJ_G0023933	Rad54b	99	65.279	ENSFALG00000005467	-	99	65.060	Ficedula_albicollis
MGP_PahariEiJ_G0023933	Rad54b	99	78.942	ENSFDAG00000020541	-	99	78.942	Fukomys_damarensis
MGP_PahariEiJ_G0023933	Rad54b	88	57.659	ENSFHEG00000014382	rad54b	87	57.908	Fundulus_heteroclitus
MGP_PahariEiJ_G0023933	Rad54b	88	56.533	ENSGMOG00000014774	rad54b	98	56.533	Gadus_morhua
MGP_PahariEiJ_G0023933	Rad54b	99	65.974	ENSGALG00000043597	RAD54B	99	66.118	Gallus_gallus
MGP_PahariEiJ_G0023933	Rad54b	99	54.989	ENSGAFG00000007901	rad54b	99	54.989	Gambusia_affinis
MGP_PahariEiJ_G0023933	Rad54b	99	53.614	ENSGACG00000009128	rad54b	100	53.614	Gasterosteus_aculeatus
MGP_PahariEiJ_G0023933	Rad54b	99	66.268	ENSGAGG00000018747	-	99	66.268	Gopherus_agassizii
MGP_PahariEiJ_G0023933	Rad54b	100	78.156	ENSGGOG00000023516	-	100	78.156	Gorilla_gorilla
MGP_PahariEiJ_G0023933	Rad54b	99	53.994	ENSHBUG00000016017	rad54b	99	53.994	Haplochromis_burtoni
MGP_PahariEiJ_G0023933	Rad54b	100	77.838	ENSHGLG00000008263	RAD54B	99	77.838	Heterocephalus_glaber_female
MGP_PahariEiJ_G0023933	Rad54b	100	77.007	ENSHGLG00100008108	-	99	77.007	Heterocephalus_glaber_male
MGP_PahariEiJ_G0023933	Rad54b	99	53.838	ENSHCOG00000004764	rad54b	98	55.831	Hippocampus_comes
MGP_PahariEiJ_G0023933	Rad54b	99	52.119	ENSIPUG00000018531	rad54b	99	52.119	Ictalurus_punctatus
MGP_PahariEiJ_G0023933	Rad54b	99	77.876	ENSSTOG00000010791	-	99	77.876	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0023933	Rad54b	100	79.473	ENSJJAG00000010314	Rad54b	100	79.473	Jaculus_jaculus
MGP_PahariEiJ_G0023933	Rad54b	99	54.535	ENSKMAG00000004744	rad54b	99	54.535	Kryptolebias_marmoratus
MGP_PahariEiJ_G0023933	Rad54b	83	67.600	ENSLACG00000000859	-	100	67.600	Latimeria_chalumnae
MGP_PahariEiJ_G0023933	Rad54b	99	57.174	ENSLOCG00000010100	rad54b	93	63.625	Lepisosteus_oculatus
MGP_PahariEiJ_G0023933	Rad54b	91	80.693	ENSLAFG00000015315	-	100	80.693	Loxodonta_africana
MGP_PahariEiJ_G0023933	Rad54b	99	78.414	ENSMFAG00000031629	-	99	83.402	Macaca_fascicularis
MGP_PahariEiJ_G0023933	Rad54b	99	78.414	ENSMMUG00000005659	-	99	78.414	Macaca_mulatta
MGP_PahariEiJ_G0023933	Rad54b	99	78.501	ENSMNEG00000016408	-	99	78.501	Macaca_nemestrina
MGP_PahariEiJ_G0023933	Rad54b	99	78.414	ENSMLEG00000006946	-	99	78.414	Mandrillus_leucophaeus
MGP_PahariEiJ_G0023933	Rad54b	99	55.987	ENSMAMG00000012269	rad54b	99	55.987	Mastacembelus_armatus
MGP_PahariEiJ_G0023933	Rad54b	99	54.207	ENSMZEG00005005281	rad54b	97	58.242	Maylandia_zebra
MGP_PahariEiJ_G0023933	Rad54b	99	65.864	ENSMGAG00000012024	-	99	65.864	Meleagris_gallopavo
MGP_PahariEiJ_G0023933	Rad54b	100	85.522	ENSMAUG00000013586	Rad54b	100	85.522	Mesocricetus_auratus
MGP_PahariEiJ_G0023933	Rad54b	99	78.539	ENSMICG00000000754	-	99	78.539	Microcebus_murinus
MGP_PahariEiJ_G0023933	Rad54b	100	85.297	ENSMOCG00000020035	Rad54b	99	85.297	Microtus_ochrogaster
MGP_PahariEiJ_G0023933	Rad54b	99	54.051	ENSMMOG00000003394	rad54b	99	54.051	Mola_mola
MGP_PahariEiJ_G0023933	Rad54b	90	74.751	ENSMODG00000007343	-	99	74.751	Monodelphis_domestica
MGP_PahariEiJ_G0023933	Rad54b	73	60.155	ENSMALG00000001520	rad54b	99	60.155	Monopterus_albus
MGP_PahariEiJ_G0023933	Rad54b	100	96.388	MGP_CAROLIEiJ_G0025810	Rad54b	100	96.388	Mus_caroli
MGP_PahariEiJ_G0023933	Rad54b	100	95.937	ENSMUSG00000078773	Rad54b	100	95.937	Mus_musculus
MGP_PahariEiJ_G0023933	Rad54b	100	96.163	MGP_SPRETEiJ_G0026758	Rad54b	100	96.163	Mus_spretus
MGP_PahariEiJ_G0023933	Rad54b	91	82.469	ENSMPUG00000008878	-	100	82.469	Mustela_putorius_furo
MGP_PahariEiJ_G0023933	Rad54b	100	76.425	ENSMLUG00000008953	-	100	76.425	Myotis_lucifugus
MGP_PahariEiJ_G0023933	Rad54b	100	84.018	ENSNGAG00000017537	Rad54b	100	84.018	Nannospalax_galili
MGP_PahariEiJ_G0023933	Rad54b	99	55.840	ENSNBRG00000013394	rad54b	99	55.840	Neolamprologus_brichardi
MGP_PahariEiJ_G0023933	Rad54b	99	78.855	ENSNLEG00000003062	-	99	83.402	Nomascus_leucogenys
MGP_PahariEiJ_G0023933	Rad54b	73	70.325	ENSMEUG00000012426	-	71	70.325	Notamacropus_eugenii
MGP_PahariEiJ_G0023933	Rad54b	91	74.783	ENSODEG00000002650	-	96	81.385	Octodon_degus
MGP_PahariEiJ_G0023933	Rad54b	100	76.711	ENSODEG00000019564	-	100	76.711	Octodon_degus
MGP_PahariEiJ_G0023933	Rad54b	99	54.338	ENSONIG00000006067	rad54b	99	54.338	Oreochromis_niloticus
MGP_PahariEiJ_G0023933	Rad54b	84	72.112	ENSOANG00000011348	-	100	72.112	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0023933	Rad54b	100	77.473	ENSOCUG00000016478	-	99	77.473	Oryctolagus_cuniculus
MGP_PahariEiJ_G0023933	Rad54b	99	53.625	ENSORLG00000008918	rad54b	99	62.267	Oryzias_latipes
MGP_PahariEiJ_G0023933	Rad54b	72	62.267	ENSORLG00020012171	rad54b	99	62.267	Oryzias_latipes_hni
MGP_PahariEiJ_G0023933	Rad54b	99	54.216	ENSORLG00015018536	rad54b	99	54.216	Oryzias_latipes_hsok
MGP_PahariEiJ_G0023933	Rad54b	85	59.508	ENSOMEG00000004345	rad54b	99	59.508	Oryzias_melastigma
MGP_PahariEiJ_G0023933	Rad54b	99	77.582	ENSOGAG00000007854	-	99	77.582	Otolemur_garnettii
MGP_PahariEiJ_G0023933	Rad54b	91	81.034	ENSOARG00000007691	-	100	81.034	Ovis_aries
MGP_PahariEiJ_G0023933	Rad54b	99	77.203	ENSPPAG00000029572	-	99	77.203	Pan_paniscus
MGP_PahariEiJ_G0023933	Rad54b	100	79.057	ENSPPRG00000007571	-	100	83.333	Panthera_pardus
MGP_PahariEiJ_G0023933	Rad54b	82	83.333	ENSPTIG00000012670	-	100	83.333	Panthera_tigris_altaica
MGP_PahariEiJ_G0023933	Rad54b	99	78.634	ENSPTRG00000020427	-	99	83.679	Pan_troglodytes
MGP_PahariEiJ_G0023933	Rad54b	99	78.524	ENSPANG00000019566	-	99	78.524	Papio_anubis
MGP_PahariEiJ_G0023933	Rad54b	99	57.709	ENSPKIG00000014974	rad54b	99	57.709	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0023933	Rad54b	99	64.122	ENSPSIG00000002383	-	98	68.867	Pelodiscus_sinensis
MGP_PahariEiJ_G0023933	Rad54b	100	85.746	ENSPEMG00000012133	Rad54b	100	85.746	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0023933	Rad54b	88	57.179	ENSPMAG00000002916	rad54b	98	57.557	Petromyzon_marinus
MGP_PahariEiJ_G0023933	Rad54b	90	75.312	ENSPCIG00000020151	-	94	75.156	Phascolarctos_cinereus
MGP_PahariEiJ_G0023933	Rad54b	99	54.180	ENSPFOG00000023411	rad54b	99	54.468	Poecilia_formosa
MGP_PahariEiJ_G0023933	Rad54b	99	54.392	ENSPLAG00000010430	rad54b	99	54.681	Poecilia_latipinna
MGP_PahariEiJ_G0023933	Rad54b	99	55.369	ENSPMEG00000016873	rad54b	99	55.369	Poecilia_mexicana
MGP_PahariEiJ_G0023933	Rad54b	99	56.146	ENSPREG00000018443	rad54b	99	56.146	Poecilia_reticulata
MGP_PahariEiJ_G0023933	Rad54b	99	78.304	ENSPPYG00000018750	-	99	78.304	Pongo_abelii
MGP_PahariEiJ_G0023933	Rad54b	99	80.000	ENSPCOG00000026845	-	99	84.552	Propithecus_coquereli
MGP_PahariEiJ_G0023933	Rad54b	83	82.321	ENSPVAG00000000261	-	86	82.321	Pteropus_vampyrus
MGP_PahariEiJ_G0023933	Rad54b	87	59.108	ENSPNYG00000018303	rad54b	95	59.108	Pundamilia_nyererei
MGP_PahariEiJ_G0023933	Rad54b	99	53.552	ENSPNAG00000000295	rad54b	99	53.552	Pygocentrus_nattereri
MGP_PahariEiJ_G0023933	Rad54b	100	88.526	ENSRNOG00000039949	Rad54b	100	88.526	Rattus_norvegicus
MGP_PahariEiJ_G0023933	Rad54b	99	78.414	ENSRBIG00000020419	-	99	78.414	Rhinopithecus_bieti
MGP_PahariEiJ_G0023933	Rad54b	99	78.414	ENSRROG00000039897	-	99	78.414	Rhinopithecus_roxellana
MGP_PahariEiJ_G0023933	Rad54b	80	36.701	YBR073W	RDH54	78	36.364	Saccharomyces_cerevisiae
MGP_PahariEiJ_G0023933	Rad54b	100	77.278	ENSSBOG00000028501	-	100	77.278	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0023933	Rad54b	99	70.033	ENSSHAG00000017038	-	99	70.033	Sarcophilus_harrisii
MGP_PahariEiJ_G0023933	Rad54b	64	64.737	ENSSFOG00015008483	rad54b	88	64.386	Scleropages_formosus
MGP_PahariEiJ_G0023933	Rad54b	99	54.770	ENSSMAG00000018659	rad54b	99	54.994	Scophthalmus_maximus
MGP_PahariEiJ_G0023933	Rad54b	97	54.369	ENSSDUG00000001122	rad54b	97	54.369	Seriola_dumerili
MGP_PahariEiJ_G0023933	Rad54b	99	54.131	ENSSLDG00000013787	rad54b	99	54.131	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0023933	Rad54b	99	65.919	ENSSPUG00000016497	-	99	65.919	Sphenodon_punctatus
MGP_PahariEiJ_G0023933	Rad54b	99	55.556	ENSSPAG00000012800	rad54b	99	55.556	Stegastes_partitus
MGP_PahariEiJ_G0023933	Rad54b	100	77.630	ENSSSCG00000006101	-	99	82.286	Sus_scrofa
MGP_PahariEiJ_G0023933	Rad54b	99	64.732	ENSTGUG00000011880	-	99	64.841	Taeniopygia_guttata
MGP_PahariEiJ_G0023933	Rad54b	99	52.860	ENSTRUG00000010015	rad54b	99	53.029	Takifugu_rubripes
MGP_PahariEiJ_G0023933	Rad54b	100	75.000	ENSTTRG00000006312	-	100	75.000	Tursiops_truncatus
MGP_PahariEiJ_G0023933	Rad54b	100	78.751	ENSUMAG00000016401	-	100	78.751	Ursus_maritimus
MGP_PahariEiJ_G0023933	Rad54b	100	77.228	ENSVPAG00000003157	-	100	77.228	Vicugna_pacos
MGP_PahariEiJ_G0023933	Rad54b	99	54.129	ENSXETG00000025924	rad54b	99	56.592	Xenopus_tropicalis
MGP_PahariEiJ_G0023933	Rad54b	99	55.211	ENSXMAG00000013141	rad54b	99	55.211	Xiphophorus_maculatus