EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0024247 (Gene tree)
Gene ID: 110312750
Gene Symbol: Ddx54
Alias: 2410015A15Rik|APR-5|DP97
Full Name: DEAD-box helicase 54
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 16188 bases
Position: chr23:10482837-10499024
Accession: 110312750
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0058578	DBP10CT	PF08147.12	3.4e-18	1	1
MGP_PahariEiJ_P0058578	ResIII	PF04851.15	2.9e-06	1	1
MGP_PahariEiJ_P0058578	DEAD	PF00270.29	2.5e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0058578	-	4310	-	MGP_PahariEiJ_P0058578	875 (aa)	XP_021042257	UPI000A30ADD4
MGP_PahariEiJ_T0058579	-	4308	-	-	- (aa)	-	-
MGP_PahariEiJ_T0058581	-	472	-	-	- (aa)	-	-
MGP_PahariEiJ_T0058580	-	848	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0024247's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0024247's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0024247	Ddx54	50	32.009	MGP_PahariEiJ_G0027765	Ddx18	64	31.991

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0024247	Ddx54	100	84.807	ENSG00000123064	DDX54	100	96.635	Homo_sapiens
MGP_PahariEiJ_G0024247	Ddx54	95	62.544	ENSAPOG00000008602	ddx54	98	62.182	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0024247	Ddx54	96	86.690	ENSAMEG00000008775	DDX54	96	86.455	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0024247	Ddx54	97	62.165	ENSACIG00000019104	ddx54	98	62.266	Amphilophus_citrinellus
MGP_PahariEiJ_G0024247	Ddx54	95	62.500	ENSAOCG00000008449	ddx54	98	62.137	Amphiprion_ocellaris
MGP_PahariEiJ_G0024247	Ddx54	95	62.500	ENSAPEG00000014287	ddx54	98	62.137	Amphiprion_percula
MGP_PahariEiJ_G0024247	Ddx54	95	62.793	ENSATEG00000018529	ddx54	97	62.824	Anabas_testudineus
MGP_PahariEiJ_G0024247	Ddx54	93	70.452	ENSAPLG00000013191	DDX54	100	70.452	Anas_platyrhynchos
MGP_PahariEiJ_G0024247	Ddx54	92	69.438	ENSACAG00000004703	DDX54	96	68.620	Anolis_carolinensis
MGP_PahariEiJ_G0024247	Ddx54	100	75.085	ENSANAG00000032761	-	100	74.521	Aotus_nancymaae
MGP_PahariEiJ_G0024247	Ddx54	89	76.864	ENSANAG00000032241	-	95	76.402	Aotus_nancymaae
MGP_PahariEiJ_G0024247	Ddx54	97	62.194	ENSACLG00000013176	ddx54	98	62.662	Astatotilapia_calliptera
MGP_PahariEiJ_G0024247	Ddx54	97	62.282	ENSAMXG00000009189	ddx54	98	61.234	Astyanax_mexicanus
MGP_PahariEiJ_G0024247	Ddx54	100	85.097	ENSBTAG00000011930	DDX54	95	85.244	Bos_taurus
MGP_PahariEiJ_G0024247	Ddx54	87	45.536	WBGene00022378	Y94H6A.5	95	44.228	Caenorhabditis_elegans
MGP_PahariEiJ_G0024247	Ddx54	93	84.333	ENSCJAG00000010039	DDX54	88	84.455	Callithrix_jacchus
MGP_PahariEiJ_G0024247	Ddx54	65	82.343	ENSCAFG00000009029	DDX54	99	82.373	Canis_familiaris
MGP_PahariEiJ_G0024247	Ddx54	100	85.341	ENSCAFG00020017643	DDX54	100	85.358	Canis_lupus_dingo
MGP_PahariEiJ_G0024247	Ddx54	100	83.447	ENSCHIG00000026798	DDX54	100	83.164	Capra_hircus
MGP_PahariEiJ_G0024247	Ddx54	99	80.385	ENSTSYG00000007898	DDX54	99	79.977	Carlito_syrichta
MGP_PahariEiJ_G0024247	Ddx54	93	83.902	ENSCAPG00000001482	DDX54	99	80.220	Cavia_aperea
MGP_PahariEiJ_G0024247	Ddx54	100	84.773	ENSCPOG00000020649	DDX54	100	84.773	Cavia_porcellus
MGP_PahariEiJ_G0024247	Ddx54	100	84.755	ENSCCAG00000022625	DDX54	100	84.642	Cebus_capucinus
MGP_PahariEiJ_G0024247	Ddx54	100	84.258	ENSCATG00000041943	DDX54	100	84.389	Cercocebus_atys
MGP_PahariEiJ_G0024247	Ddx54	100	83.657	ENSCLAG00000010748	DDX54	100	83.200	Chinchilla_lanigera
MGP_PahariEiJ_G0024247	Ddx54	99	79.425	ENSCSAG00000002432	DDX54	93	82.084	Chlorocebus_sabaeus
MGP_PahariEiJ_G0024247	Ddx54	75	64.776	ENSCPBG00000017982	DDX54	85	65.060	Chrysemys_picta_bellii
MGP_PahariEiJ_G0024247	Ddx54	86	52.666	ENSCING00000004789	-	94	51.667	Ciona_intestinalis
MGP_PahariEiJ_G0024247	Ddx54	88	51.351	ENSCSAVG00000008916	-	98	66.867	Ciona_savignyi
MGP_PahariEiJ_G0024247	Ddx54	88	95.763	ENSCANG00000020637	DDX54	100	95.763	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0024247	Ddx54	100	92.686	ENSCGRG00001014803	Ddx54	100	92.686	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0024247	Ddx54	100	92.360	ENSCGRG00000002827	Ddx54	100	92.360	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0024247	Ddx54	95	60.471	ENSCSEG00000016462	ddx54	98	60.209	Cynoglossus_semilaevis
MGP_PahariEiJ_G0024247	Ddx54	97	60.880	ENSCVAG00000022404	ddx54	98	60.814	Cyprinodon_variegatus
MGP_PahariEiJ_G0024247	Ddx54	97	62.587	ENSDARG00000105286	ddx54	98	62.125	Danio_rerio
MGP_PahariEiJ_G0024247	Ddx54	100	83.447	ENSDNOG00000032913	DDX54	100	83.676	Dasypus_novemcinctus
MGP_PahariEiJ_G0024247	Ddx54	80	83.548	ENSDORG00000003399	Ddx54	95	83.691	Dipodomys_ordii
MGP_PahariEiJ_G0024247	Ddx54	85	43.687	FBgn0052344	CG32344	87	45.332	Drosophila_melanogaster
MGP_PahariEiJ_G0024247	Ddx54	50	95.205	ENSETEG00000008430	-	53	95.205	Echinops_telfairi
MGP_PahariEiJ_G0024247	Ddx54	80	58.182	ENSEBUG00000008886	ddx54	97	59.110	Eptatretus_burgeri
MGP_PahariEiJ_G0024247	Ddx54	100	76.697	ENSEASG00005009501	DDX54	100	76.090	Equus_asinus_asinus
MGP_PahariEiJ_G0024247	Ddx54	100	84.790	ENSECAG00000012890	DDX54	100	86.139	Equus_caballus
MGP_PahariEiJ_G0024247	Ddx54	68	93.671	ENSEEUG00000008296	-	61	93.671	Erinaceus_europaeus
MGP_PahariEiJ_G0024247	Ddx54	96	61.350	ENSELUG00000013533	ddx54	98	61.503	Esox_lucius
MGP_PahariEiJ_G0024247	Ddx54	100	84.055	ENSFCAG00000027806	DDX54	100	84.282	Felis_catus
MGP_PahariEiJ_G0024247	Ddx54	91	71.286	ENSFALG00000007737	DDX54	100	71.036	Ficedula_albicollis
MGP_PahariEiJ_G0024247	Ddx54	90	88.720	ENSFDAG00000019953	DDX54	100	88.323	Fukomys_damarensis
MGP_PahariEiJ_G0024247	Ddx54	97	60.859	ENSFHEG00000018425	ddx54	98	60.511	Fundulus_heteroclitus
MGP_PahariEiJ_G0024247	Ddx54	94	59.145	ENSGMOG00000011746	ddx54	95	61.104	Gadus_morhua
MGP_PahariEiJ_G0024247	Ddx54	93	71.081	ENSGALG00000007490	DDX54	97	70.290	Gallus_gallus
MGP_PahariEiJ_G0024247	Ddx54	97	60.280	ENSGAFG00000010336	ddx54	97	60.854	Gambusia_affinis
MGP_PahariEiJ_G0024247	Ddx54	93	59.574	ENSGACG00000016793	ddx54	95	59.501	Gasterosteus_aculeatus
MGP_PahariEiJ_G0024247	Ddx54	94	70.244	ENSGAGG00000022803	DDX54	100	69.581	Gopherus_agassizii
MGP_PahariEiJ_G0024247	Ddx54	100	84.938	ENSGGOG00000010414	DDX54	100	84.694	Gorilla_gorilla
MGP_PahariEiJ_G0024247	Ddx54	100	84.510	ENSHGLG00000014411	DDX54	100	84.240	Heterocephalus_glaber_female
MGP_PahariEiJ_G0024247	Ddx54	100	84.721	ENSHGLG00100018511	DDX54	100	84.449	Heterocephalus_glaber_male
MGP_PahariEiJ_G0024247	Ddx54	97	61.027	ENSHCOG00000019287	ddx54	98	60.814	Hippocampus_comes
MGP_PahariEiJ_G0024247	Ddx54	96	61.655	ENSIPUG00000015556	Ddx54	98	61.253	Ictalurus_punctatus
MGP_PahariEiJ_G0024247	Ddx54	87	86.839	ENSSTOG00000004068	DDX54	100	86.581	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0024247	Ddx54	99	87.991	ENSJJAG00000015712	Ddx54	100	87.472	Jaculus_jaculus
MGP_PahariEiJ_G0024247	Ddx54	97	60.864	ENSKMAG00000017520	ddx54	98	61.348	Kryptolebias_marmoratus
MGP_PahariEiJ_G0024247	Ddx54	96	58.601	ENSLBEG00000019480	ddx54	98	59.488	Labrus_bergylta
MGP_PahariEiJ_G0024247	Ddx54	95	66.033	ENSLACG00000008944	DDX54	96	65.578	Latimeria_chalumnae
MGP_PahariEiJ_G0024247	Ddx54	96	64.009	ENSLOCG00000008485	ddx54	98	64.193	Lepisosteus_oculatus
MGP_PahariEiJ_G0024247	Ddx54	89	74.720	ENSLAFG00000027782	DDX54	100	74.595	Loxodonta_africana
MGP_PahariEiJ_G0024247	Ddx54	100	84.842	ENSMFAG00000043636	DDX54	100	84.729	Macaca_fascicularis
MGP_PahariEiJ_G0024247	Ddx54	100	84.050	ENSMMUG00000021795	DDX54	100	84.163	Macaca_mulatta
MGP_PahariEiJ_G0024247	Ddx54	100	77.489	ENSMNEG00000043605	DDX54	100	77.602	Macaca_nemestrina
MGP_PahariEiJ_G0024247	Ddx54	99	79.705	ENSMLEG00000038981	DDX54	99	79.864	Mandrillus_leucophaeus
MGP_PahariEiJ_G0024247	Ddx54	97	61.201	ENSMAMG00000012784	ddx54	98	61.744	Mastacembelus_armatus
MGP_PahariEiJ_G0024247	Ddx54	97	61.727	ENSMZEG00005018773	ddx54	98	62.191	Maylandia_zebra
MGP_PahariEiJ_G0024247	Ddx54	93	70.411	ENSMGAG00000009183	DDX54	100	69.028	Meleagris_gallopavo
MGP_PahariEiJ_G0024247	Ddx54	100	92.000	ENSMAUG00000011051	Ddx54	100	92.571	Mesocricetus_auratus
MGP_PahariEiJ_G0024247	Ddx54	100	84.265	ENSMICG00000012217	DDX54	100	84.151	Microcebus_murinus
MGP_PahariEiJ_G0024247	Ddx54	100	91.886	ENSMOCG00000010835	Ddx54	100	92.114	Microtus_ochrogaster
MGP_PahariEiJ_G0024247	Ddx54	95	60.382	ENSMMOG00000009634	ddx54	98	59.696	Mola_mola
MGP_PahariEiJ_G0024247	Ddx54	95	75.418	ENSMODG00000003413	DDX54	99	75.656	Monodelphis_domestica
MGP_PahariEiJ_G0024247	Ddx54	96	62.588	ENSMALG00000022098	ddx54	98	62.588	Monopterus_albus
MGP_PahariEiJ_G0024247	Ddx54	100	97.486	MGP_CAROLIEiJ_G0027665	Ddx54	100	97.486	Mus_caroli
MGP_PahariEiJ_G0024247	Ddx54	100	97.149	ENSMUSG00000029599	Ddx54	100	97.149	Mus_musculus
MGP_PahariEiJ_G0024247	Ddx54	100	97.719	MGP_SPRETEiJ_G0028665	Ddx54	100	97.719	Mus_spretus
MGP_PahariEiJ_G0024247	Ddx54	100	84.414	ENSMPUG00000002574	DDX54	100	84.528	Mustela_putorius_furo
MGP_PahariEiJ_G0024247	Ddx54	100	87.827	ENSNGAG00000021313	Ddx54	100	88.055	Nannospalax_galili
MGP_PahariEiJ_G0024247	Ddx54	66	78.000	ENSNBRG00000005588	ddx54	73	79.082	Neolamprologus_brichardi
MGP_PahariEiJ_G0024247	Ddx54	100	85.324	ENSNLEG00000000162	DDX54	100	85.097	Nomascus_leucogenys
MGP_PahariEiJ_G0024247	Ddx54	80	76.504	ENSMEUG00000015392	DDX54	98	78.139	Notamacropus_eugenii
MGP_PahariEiJ_G0024247	Ddx54	91	78.353	ENSOPRG00000012000	DDX54	92	77.381	Ochotona_princeps
MGP_PahariEiJ_G0024247	Ddx54	100	81.528	ENSODEG00000014863	DDX54	100	81.414	Octodon_degus
MGP_PahariEiJ_G0024247	Ddx54	100	83.465	ENSOCUG00000008932	DDX54	100	83.560	Oryctolagus_cuniculus
MGP_PahariEiJ_G0024247	Ddx54	96	61.279	ENSORLG00000007385	ddx54	98	61.124	Oryzias_latipes
MGP_PahariEiJ_G0024247	Ddx54	96	61.628	ENSORLG00020000858	ddx54	98	61.593	Oryzias_latipes_hni
MGP_PahariEiJ_G0024247	Ddx54	97	60.739	ENSORLG00015006956	ddx54	98	61.124	Oryzias_latipes_hsok
MGP_PahariEiJ_G0024247	Ddx54	94	62.172	ENSOMEG00000003663	ddx54	98	61.827	Oryzias_melastigma
MGP_PahariEiJ_G0024247	Ddx54	100	85.388	ENSOGAG00000004210	DDX54	100	85.274	Otolemur_garnettii
MGP_PahariEiJ_G0024247	Ddx54	100	84.109	ENSOARG00000008363	DDX54	100	84.187	Ovis_aries
MGP_PahariEiJ_G0024247	Ddx54	100	83.842	ENSPPAG00000042178	DDX54	100	83.842	Pan_paniscus
MGP_PahariEiJ_G0024247	Ddx54	100	82.574	ENSPPRG00000005223	DDX54	100	82.821	Panthera_pardus
MGP_PahariEiJ_G0024247	Ddx54	73	73.913	ENSPTIG00000019728	DDX54	86	74.638	Panthera_tigris_altaica
MGP_PahariEiJ_G0024247	Ddx54	100	84.127	ENSPTRG00000005483	DDX54	100	84.467	Pan_troglodytes
MGP_PahariEiJ_G0024247	Ddx54	100	84.276	ENSPANG00000008883	DDX54	100	84.389	Papio_anubis
MGP_PahariEiJ_G0024247	Ddx54	96	63.201	ENSPKIG00000018272	ddx54	96	63.306	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0024247	Ddx54	53	81.197	ENSPSIG00000005055	DDX54	96	81.023	Pelodiscus_sinensis
MGP_PahariEiJ_G0024247	Ddx54	93	60.513	ENSPMGG00000010988	ddx54	99	60.343	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0024247	Ddx54	100	93.600	ENSPEMG00000016701	Ddx54	100	93.600	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0024247	Ddx54	97	60.910	ENSPFOG00000019822	ddx54	97	61.629	Poecilia_formosa
MGP_PahariEiJ_G0024247	Ddx54	97	60.325	ENSPLAG00000004530	ddx54	97	60.731	Poecilia_latipinna
MGP_PahariEiJ_G0024247	Ddx54	97	60.093	ENSPMEG00000010803	ddx54	97	60.495	Poecilia_mexicana
MGP_PahariEiJ_G0024247	Ddx54	97	60.581	ENSPREG00000014372	ddx54	97	61.013	Poecilia_reticulata
MGP_PahariEiJ_G0024247	Ddx54	100	84.615	ENSPPYG00000004984	DDX54	100	84.729	Pongo_abelii
MGP_PahariEiJ_G0024247	Ddx54	100	78.677	ENSPCAG00000008462	DDX54	100	78.449	Procavia_capensis
MGP_PahariEiJ_G0024247	Ddx54	100	85.046	ENSPCOG00000006050	DDX54	100	85.194	Propithecus_coquereli
MGP_PahariEiJ_G0024247	Ddx54	93	87.973	ENSPVAG00000017347	DDX54	100	73.948	Pteropus_vampyrus
MGP_PahariEiJ_G0024247	Ddx54	97	59.535	ENSPNAG00000014459	ddx54	95	65.052	Pygocentrus_nattereri
MGP_PahariEiJ_G0024247	Ddx54	100	95.211	ENSRNOG00000001377	Ddx54	96	95.211	Rattus_norvegicus
MGP_PahariEiJ_G0024247	Ddx54	100	84.407	ENSRBIG00000032535	DDX54	100	84.407	Rhinopithecus_bieti
MGP_PahariEiJ_G0024247	Ddx54	100	80.565	ENSRROG00000029557	DDX54	100	80.452	Rhinopithecus_roxellana
MGP_PahariEiJ_G0024247	Ddx54	87	36.508	YDL031W	-	82	36.276	Saccharomyces_cerevisiae
MGP_PahariEiJ_G0024247	Ddx54	100	84.659	ENSSBOG00000028194	DDX54	100	84.886	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0024247	Ddx54	94	72.335	ENSSHAG00000015646	DDX54	100	74.272	Sarcophilus_harrisii
MGP_PahariEiJ_G0024247	Ddx54	96	63.041	ENSSFOG00015014981	ddx54	98	62.648	Scleropages_formosus
MGP_PahariEiJ_G0024247	Ddx54	94	58.235	ENSSMAG00000003210	ddx54	98	59.049	Scophthalmus_maximus
MGP_PahariEiJ_G0024247	Ddx54	94	60.308	ENSSDUG00000004474	ddx54	98	60.209	Seriola_dumerili
MGP_PahariEiJ_G0024247	Ddx54	95	59.272	ENSSLDG00000010380	ddx54	98	59.516	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0024247	Ddx54	96	69.276	ENSSPUG00000014141	DDX54	97	68.720	Sphenodon_punctatus
MGP_PahariEiJ_G0024247	Ddx54	91	61.721	ENSSPAG00000022918	ddx54	97	61.650	Stegastes_partitus
MGP_PahariEiJ_G0024247	Ddx54	100	85.795	ENSSSCG00000009876	DDX54	100	85.374	Sus_scrofa
MGP_PahariEiJ_G0024247	Ddx54	92	70.393	ENSTGUG00000009126	DDX54	100	69.902	Taeniopygia_guttata
MGP_PahariEiJ_G0024247	Ddx54	96	61.335	ENSTRUG00000014939	ddx54	98	61.201	Takifugu_rubripes
MGP_PahariEiJ_G0024247	Ddx54	99	61.845	ENSTNIG00000009037	ddx54	100	61.503	Tetraodon_nigroviridis
MGP_PahariEiJ_G0024247	Ddx54	73	93.462	ENSTBEG00000003783	DDX54	79	93.462	Tupaia_belangeri
MGP_PahariEiJ_G0024247	Ddx54	97	82.201	ENSTTRG00000016678	DDX54	100	81.200	Tursiops_truncatus
MGP_PahariEiJ_G0024247	Ddx54	100	84.642	ENSUAMG00000028387	DDX54	100	84.842	Ursus_americanus
MGP_PahariEiJ_G0024247	Ddx54	88	88.991	ENSUMAG00000010245	DDX54	95	93.590	Ursus_maritimus
MGP_PahariEiJ_G0024247	Ddx54	100	85.455	ENSVVUG00000010212	DDX54	100	85.471	Vulpes_vulpes
MGP_PahariEiJ_G0024247	Ddx54	97	63.372	ENSXETG00000016410	ddx54	96	64.174	Xenopus_tropicalis
MGP_PahariEiJ_G0024247	Ddx54	95	61.420	ENSXCOG00000002909	ddx54	97	61.420	Xiphophorus_couchianus
MGP_PahariEiJ_G0024247	Ddx54	95	61.538	ENSXMAG00000005312	ddx54	97	61.302	Xiphophorus_maculatus