EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0024360 (Gene tree)
Gene ID: 110339178
Gene Symbol: Sfswap
Alias: 1190005N23Rik|6330437E22Rik|Sfrs8
Full Name: splicing factor SWAP
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 71561 bases
Position: chr23:19536203-19607763
Accession: 110339178
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0059220	DRY_EERY	PF09750.9	1.2e-32	1	1
MGP_PahariEiJ_P0059220	Surp	PF01805.20	8.7e-27	1	2
MGP_PahariEiJ_P0059220	Surp	PF01805.20	8.7e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0059233	-	642	-	-	- (aa)	-	-
MGP_PahariEiJ_T0059230	-	2077	-	-	- (aa)	-	-
MGP_PahariEiJ_T0059231	-	426	-	-	- (aa)	-	-
MGP_PahariEiJ_T0059234	-	635	-	-	- (aa)	-	-
MGP_PahariEiJ_T0059229	-	559	-	MGP_PahariEiJ_P0059229	68 (aa)	-	-
MGP_PahariEiJ_T0059228	-	700	-	-	- (aa)	-	-
MGP_PahariEiJ_T0059232	-	1256	-	-	- (aa)	-	-
MGP_PahariEiJ_T0059223	-	5195	-	-	- (aa)	-	-
MGP_PahariEiJ_T0059222	-	3454	-	-	- (aa)	-	-
MGP_PahariEiJ_T0059221	-	2626	-	MGP_PahariEiJ_P0059221	121 (aa)	-	-
MGP_PahariEiJ_T0059220	-	3308	XM_021222718	MGP_PahariEiJ_P0059220	948 (aa)	XP_021078377	UPI000A30C5A1
MGP_PahariEiJ_T0059227	-	305	-	-	- (aa)	-	-
MGP_PahariEiJ_T0059226	-	707	-	-	- (aa)	-	-
MGP_PahariEiJ_T0059225	-	656	-	-	- (aa)	-	-
MGP_PahariEiJ_T0059224	-	436	-	MGP_PahariEiJ_P0059224	82 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0024360's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0024360's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0024360	Sfswap	100	91.736	ENSG00000061936	SFSWAP	100	91.736	Homo_sapiens
MGP_PahariEiJ_G0024360	Sfswap	68	37.805	ENSG00000104859	CLASRP	53	47.826	Homo_sapiens
MGP_PahariEiJ_G0024360	Sfswap	84	65.385	ENSAPOG00000005784	sfswap	60	80.952	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0024360	Sfswap	94	91.228	ENSAMEG00000013818	SFSWAP	100	84.526	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0024360	Sfswap	84	65.385	ENSACIG00000009240	-	68	80.000	Amphilophus_citrinellus
MGP_PahariEiJ_G0024360	Sfswap	67	77.778	ENSAOCG00000016469	sfswap	99	48.323	Amphiprion_ocellaris
MGP_PahariEiJ_G0024360	Sfswap	67	77.778	ENSAPEG00000004965	sfswap	97	49.544	Amphiprion_percula
MGP_PahariEiJ_G0024360	Sfswap	100	75.678	ENSAPLG00000013808	SFSWAP	97	76.616	Anas_platyrhynchos
MGP_PahariEiJ_G0024360	Sfswap	100	87.618	ENSANAG00000001518	SFSWAP	100	87.618	Aotus_nancymaae
MGP_PahariEiJ_G0024360	Sfswap	84	65.385	ENSACLG00000020159	sfswap	93	65.183	Astatotilapia_calliptera
MGP_PahariEiJ_G0024360	Sfswap	100	87.277	ENSBTAG00000000439	SFSWAP	100	87.066	Bos_taurus
MGP_PahariEiJ_G0024360	Sfswap	100	88.130	ENSCJAG00000003613	SFSWAP	100	87.290	Callithrix_jacchus
MGP_PahariEiJ_G0024360	Sfswap	100	85.669	ENSCAFG00000006625	SFSWAP	100	85.880	Canis_familiaris
MGP_PahariEiJ_G0024360	Sfswap	87	78.806	ENSCAFG00020011254	SFSWAP	99	77.643	Canis_lupus_dingo
MGP_PahariEiJ_G0024360	Sfswap	100	87.066	ENSCHIG00000008838	SFSWAP	100	86.856	Capra_hircus
MGP_PahariEiJ_G0024360	Sfswap	100	87.382	ENSTSYG00000010303	SFSWAP	100	88.223	Carlito_syrichta
MGP_PahariEiJ_G0024360	Sfswap	92	87.273	ENSCAPG00000004394	SFSWAP	96	88.068	Cavia_aperea
MGP_PahariEiJ_G0024360	Sfswap	94	96.491	ENSCPOG00000005280	SFSWAP	100	88.235	Cavia_porcellus
MGP_PahariEiJ_G0024360	Sfswap	100	87.395	ENSCCAG00000037255	SFSWAP	100	86.870	Cebus_capucinus
MGP_PahariEiJ_G0024360	Sfswap	100	88.433	ENSCATG00000031094	SFSWAP	100	88.749	Cercocebus_atys
MGP_PahariEiJ_G0024360	Sfswap	94	97.368	ENSCLAG00000008380	SFSWAP	100	89.905	Chinchilla_lanigera
MGP_PahariEiJ_G0024360	Sfswap	100	88.223	ENSCSAG00000001884	SFSWAP	100	88.538	Chlorocebus_sabaeus
MGP_PahariEiJ_G0024360	Sfswap	92	73.007	ENSCHOG00000003578	SFSWAP	100	73.121	Choloepus_hoffmanni
MGP_PahariEiJ_G0024360	Sfswap	100	88.433	ENSCANG00000036501	SFSWAP	100	88.749	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0024360	Sfswap	100	96.519	ENSCGRG00001011284	Sfswap	100	96.519	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0024360	Sfswap	100	96.519	ENSCGRG00000017417	Sfswap	100	96.519	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0024360	Sfswap	84	66.019	ENSCSEG00000003773	sfswap	97	49.631	Cynoglossus_semilaevis
MGP_PahariEiJ_G0024360	Sfswap	100	59.504	ENSCVAG00000001208	-	100	59.504	Cyprinodon_variegatus
MGP_PahariEiJ_G0024360	Sfswap	52	60.000	ENSCVAG00000001205	-	72	47.810	Cyprinodon_variegatus
MGP_PahariEiJ_G0024360	Sfswap	94	90.351	ENSDNOG00000018742	SFSWAP	100	83.602	Dasypus_novemcinctus
MGP_PahariEiJ_G0024360	Sfswap	97	82.519	ENSDORG00000010352	Sfswap	99	81.868	Dipodomys_ordii
MGP_PahariEiJ_G0024360	Sfswap	68	56.627	FBgn0003638	su(w[a])	56	55.556	Drosophila_melanogaster
MGP_PahariEiJ_G0024360	Sfswap	86	69.333	ENSETEG00000016657	-	91	69.667	Echinops_telfairi
MGP_PahariEiJ_G0024360	Sfswap	84	38.201	ENSEBUG00000016748	SFSWAP	93	43.046	Eptatretus_burgeri
MGP_PahariEiJ_G0024360	Sfswap	100	86.856	ENSEASG00005016502	SFSWAP	100	87.277	Equus_asinus_asinus
MGP_PahariEiJ_G0024360	Sfswap	94	91.228	ENSECAG00000007657	SFSWAP	99	86.989	Equus_caballus
MGP_PahariEiJ_G0024360	Sfswap	86	73.415	ENSEEUG00000001713	SFSWAP	99	72.983	Erinaceus_europaeus
MGP_PahariEiJ_G0024360	Sfswap	94	66.667	ENSELUG00000010942	sfswap	99	63.990	Esox_lucius
MGP_PahariEiJ_G0024360	Sfswap	100	86.000	ENSFCAG00000010778	SFSWAP	100	86.316	Felis_catus
MGP_PahariEiJ_G0024360	Sfswap	100	74.847	ENSFALG00000009577	SFSWAP	51	75.654	Ficedula_albicollis
MGP_PahariEiJ_G0024360	Sfswap	94	97.368	ENSFDAG00000017235	SFSWAP	100	89.110	Fukomys_damarensis
MGP_PahariEiJ_G0024360	Sfswap	94	59.649	ENSFHEG00000011149	-	90	59.146	Fundulus_heteroclitus
MGP_PahariEiJ_G0024360	Sfswap	67	77.778	ENSGMOG00000009205	sfswap	76	70.199	Gadus_morhua
MGP_PahariEiJ_G0024360	Sfswap	97	76.609	ENSGALG00000002487	SFSWAP	97	76.155	Gallus_gallus
MGP_PahariEiJ_G0024360	Sfswap	94	60.526	ENSGAFG00000006272	sfswap	92	63.433	Gambusia_affinis
MGP_PahariEiJ_G0024360	Sfswap	77	72.549	ENSGACG00000017647	sfswap	99	53.591	Gasterosteus_aculeatus
MGP_PahariEiJ_G0024360	Sfswap	100	73.092	ENSGAGG00000002611	SFSWAP	52	72.254	Gopherus_agassizii
MGP_PahariEiJ_G0024360	Sfswap	100	88.749	ENSGGOG00000014877	SFSWAP	100	88.854	Gorilla_gorilla
MGP_PahariEiJ_G0024360	Sfswap	84	65.385	ENSHBUG00000005629	sfswap	82	64.885	Haplochromis_burtoni
MGP_PahariEiJ_G0024360	Sfswap	94	96.491	ENSHGLG00000019216	SFSWAP	100	90.431	Heterocephalus_glaber_female
MGP_PahariEiJ_G0024360	Sfswap	100	90.116	ENSHGLG00100019350	SFSWAP	100	90.221	Heterocephalus_glaber_male
MGP_PahariEiJ_G0024360	Sfswap	84	63.810	ENSHCOG00000009475	sfswap	99	50.000	Hippocampus_comes
MGP_PahariEiJ_G0024360	Sfswap	84	68.627	ENSIPUG00000010598	sfswap	99	51.016	Ictalurus_punctatus
MGP_PahariEiJ_G0024360	Sfswap	94	95.614	ENSSTOG00000000773	SFSWAP	100	89.158	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0024360	Sfswap	100	90.536	ENSJJAG00000006609	Sfswap	100	90.641	Jaculus_jaculus
MGP_PahariEiJ_G0024360	Sfswap	67	77.778	ENSKMAG00000013168	sfswap	77	65.854	Kryptolebias_marmoratus
MGP_PahariEiJ_G0024360	Sfswap	100	64.499	ENSLACG00000018678	SFSWAP	96	64.769	Latimeria_chalumnae
MGP_PahariEiJ_G0024360	Sfswap	92	84.187	ENSLAFG00000014462	SFSWAP	100	84.528	Loxodonta_africana
MGP_PahariEiJ_G0024360	Sfswap	94	92.982	ENSMFAG00000037352	SFSWAP	100	81.312	Macaca_fascicularis
MGP_PahariEiJ_G0024360	Sfswap	100	88.538	ENSMMUG00000020343	SFSWAP	100	88.433	Macaca_mulatta
MGP_PahariEiJ_G0024360	Sfswap	100	88.538	ENSMNEG00000041002	SFSWAP	100	88.433	Macaca_nemestrina
MGP_PahariEiJ_G0024360	Sfswap	94	92.982	ENSMLEG00000035728	SFSWAP	100	86.015	Mandrillus_leucophaeus
MGP_PahariEiJ_G0024360	Sfswap	84	65.385	ENSMZEG00005017834	SFSWAP	90	64.706	Maylandia_zebra
MGP_PahariEiJ_G0024360	Sfswap	88	63.393	ENSMZEG00005009699	-	93	63.393	Maylandia_zebra
MGP_PahariEiJ_G0024360	Sfswap	97	68.878	ENSMGAG00000002191	SFSWAP	97	69.715	Meleagris_gallopavo
MGP_PahariEiJ_G0024360	Sfswap	100	87.789	ENSMICG00000004465	SFSWAP	100	88.947	Microcebus_murinus
MGP_PahariEiJ_G0024360	Sfswap	100	96.097	ENSMOCG00000014390	Sfswap	100	96.097	Microtus_ochrogaster
MGP_PahariEiJ_G0024360	Sfswap	84	50.000	ENSMMOG00000021053	-	84	61.093	Mola_mola
MGP_PahariEiJ_G0024360	Sfswap	100	99.174	MGP_CAROLIEiJ_G0027780	Sfswap	100	99.174	Mus_caroli
MGP_PahariEiJ_G0024360	Sfswap	100	99.174	ENSMUSG00000029439	Sfswap	100	99.174	Mus_musculus
MGP_PahariEiJ_G0024360	Sfswap	100	99.174	MGP_SPRETEiJ_G0028779	Sfswap	100	99.174	Mus_spretus
MGP_PahariEiJ_G0024360	Sfswap	100	85.037	ENSMPUG00000002218	SFSWAP	100	84.932	Mustela_putorius_furo
MGP_PahariEiJ_G0024360	Sfswap	94	90.351	ENSMLUG00000011296	SFSWAP	100	77.060	Myotis_lucifugus
MGP_PahariEiJ_G0024360	Sfswap	100	92.421	ENSNGAG00000018167	Sfswap	100	92.421	Nannospalax_galili
MGP_PahariEiJ_G0024360	Sfswap	68	58.012	ENSNBRG00000020857	sfswap	91	66.269	Neolamprologus_brichardi
MGP_PahariEiJ_G0024360	Sfswap	94	92.982	ENSNLEG00000008386	SFSWAP	100	86.359	Nomascus_leucogenys
MGP_PahariEiJ_G0024360	Sfswap	71	86.380	ENSMEUG00000009556	-	79	86.380	Notamacropus_eugenii
MGP_PahariEiJ_G0024360	Sfswap	100	74.211	ENSOPRG00000006983	-	100	74.211	Ochotona_princeps
MGP_PahariEiJ_G0024360	Sfswap	94	96.491	ENSODEG00000008020	SFSWAP	100	89.800	Octodon_degus
MGP_PahariEiJ_G0024360	Sfswap	96	53.415	ENSONIG00000003757	sfswap	99	52.196	Oreochromis_niloticus
MGP_PahariEiJ_G0024360	Sfswap	52	78.455	ENSOANG00000013861	SFSWAP	100	81.818	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0024360	Sfswap	94	93.860	ENSOCUG00000002165	SFSWAP	100	84.607	Oryctolagus_cuniculus
MGP_PahariEiJ_G0024360	Sfswap	67	77.778	ENSORLG00000010983	sfswap	88	66.667	Oryzias_latipes
MGP_PahariEiJ_G0024360	Sfswap	67	77.778	ENSORLG00020010779	sfswap	88	66.667	Oryzias_latipes_hni
MGP_PahariEiJ_G0024360	Sfswap	67	77.778	ENSOMEG00000022065	sfswap	89	67.568	Oryzias_melastigma
MGP_PahariEiJ_G0024360	Sfswap	94	91.228	ENSOGAG00000016724	SFSWAP	99	87.839	Otolemur_garnettii
MGP_PahariEiJ_G0024360	Sfswap	100	86.569	ENSOARG00000014314	SFSWAP	100	86.359	Ovis_aries
MGP_PahariEiJ_G0024360	Sfswap	100	88.538	ENSPPAG00000036706	SFSWAP	100	88.644	Pan_paniscus
MGP_PahariEiJ_G0024360	Sfswap	94	88.596	ENSPTIG00000004304	SFSWAP	97	86.717	Panthera_tigris_altaica
MGP_PahariEiJ_G0024360	Sfswap	100	88.328	ENSPTRG00000005640	SFSWAP	100	88.433	Pan_troglodytes
MGP_PahariEiJ_G0024360	Sfswap	100	88.433	ENSPANG00000019737	SFSWAP	100	88.749	Papio_anubis
MGP_PahariEiJ_G0024360	Sfswap	84	70.192	ENSPKIG00000008327	sfswap	100	54.112	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0024360	Sfswap	61	62.539	ENSPSIG00000017807	SFSWAP	86	65.574	Pelodiscus_sinensis
MGP_PahariEiJ_G0024360	Sfswap	100	59.350	ENSPMGG00000008093	-	97	59.350	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0024360	Sfswap	100	95.890	ENSPEMG00000001237	Sfswap	100	95.890	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0024360	Sfswap	71	75.581	ENSPMAG00000008279	sfswap	77	62.535	Petromyzon_marinus
MGP_PahariEiJ_G0024360	Sfswap	94	60.526	ENSPLAG00000008513	sfswap	91	63.342	Poecilia_latipinna
MGP_PahariEiJ_G0024360	Sfswap	94	60.526	ENSPREG00000006692	sfswap	90	64.327	Poecilia_reticulata
MGP_PahariEiJ_G0024360	Sfswap	94	92.982	ENSPPYG00000005129	SFSWAP	100	88.424	Pongo_abelii
MGP_PahariEiJ_G0024360	Sfswap	94	91.228	ENSPCAG00000004977	-	65	87.500	Procavia_capensis
MGP_PahariEiJ_G0024360	Sfswap	100	87.171	ENSPCOG00000023786	SFSWAP	100	88.644	Propithecus_coquereli
MGP_PahariEiJ_G0024360	Sfswap	94	90.351	ENSPVAG00000014918	SFSWAP	92	84.669	Pteropus_vampyrus
MGP_PahariEiJ_G0024360	Sfswap	84	65.385	ENSPNYG00000012660	sfswap	78	64.194	Pundamilia_nyererei
MGP_PahariEiJ_G0024360	Sfswap	100	95.148	ENSRNOG00000000931	Sfswap	99	98.238	Rattus_norvegicus
MGP_PahariEiJ_G0024360	Sfswap	94	92.982	ENSRBIG00000036330	SFSWAP	100	83.070	Rhinopithecus_bieti
MGP_PahariEiJ_G0024360	Sfswap	100	88.328	ENSRROG00000032001	SFSWAP	100	88.433	Rhinopithecus_roxellana
MGP_PahariEiJ_G0024360	Sfswap	94	93.860	ENSSBOG00000026217	SFSWAP	100	87.417	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0024360	Sfswap	92	80.968	ENSSHAG00000014232	SFSWAP	56	81.162	Sarcophilus_harrisii
MGP_PahariEiJ_G0024360	Sfswap	67	75.309	ENSSMAG00000018718	sfswap	89	65.172	Scophthalmus_maximus
MGP_PahariEiJ_G0024360	Sfswap	67	79.012	ENSSDUG00000021680	sfswap	53	66.667	Seriola_dumerili
MGP_PahariEiJ_G0024360	Sfswap	67	79.012	ENSSLDG00000010835	sfswap	53	66.667	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0024360	Sfswap	78	84.906	ENSSARG00000000424	SFSWAP	85	85.335	Sorex_araneus
MGP_PahariEiJ_G0024360	Sfswap	87	73.589	ENSSPUG00000010272	SFSWAP	99	74.728	Sphenodon_punctatus
MGP_PahariEiJ_G0024360	Sfswap	100	86.779	ENSSSCG00000009744	SFSWAP	100	86.988	Sus_scrofa
MGP_PahariEiJ_G0024360	Sfswap	97	76.616	ENSTGUG00000004623	SFSWAP	53	74.648	Taeniopygia_guttata
MGP_PahariEiJ_G0024360	Sfswap	89	63.889	ENSTNIG00000006156	-	99	60.185	Tetraodon_nigroviridis
MGP_PahariEiJ_G0024360	Sfswap	54	90.625	ENSTBEG00000004983	-	66	90.625	Tupaia_belangeri
MGP_PahariEiJ_G0024360	Sfswap	94	91.228	ENSTTRG00000013478	SFSWAP	93	92.105	Tursiops_truncatus
MGP_PahariEiJ_G0024360	Sfswap	94	91.228	ENSUAMG00000016807	SFSWAP	100	84.615	Ursus_americanus
MGP_PahariEiJ_G0024360	Sfswap	94	91.228	ENSUMAG00000002957	SFSWAP	91	85.995	Ursus_maritimus
MGP_PahariEiJ_G0024360	Sfswap	94	90.351	ENSVPAG00000010479	-	65	91.057	Vicugna_pacos
MGP_PahariEiJ_G0024360	Sfswap	100	85.774	ENSVVUG00000010753	SFSWAP	100	85.985	Vulpes_vulpes
MGP_PahariEiJ_G0024360	Sfswap	94	59.649	ENSXCOG00000005131	sfswap	77	70.070	Xiphophorus_couchianus