EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0024580 (Gene tree)
Gene ID: 110313219
Gene Symbol: Ptcd1
Alias: 1110069M14Rik
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 20128 bases
Position: chr23:35213627-35233754
Accession: 110313219
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0060349	PPR	PF01535.20	1.8e-17	1	2
MGP_PahariEiJ_P0060349	PPR	PF01535.20	1.8e-17	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0060349	-	3044	XM_021187235	MGP_PahariEiJ_P0060349	694 (aa)	XP_021042894	UPI000A30FB78
MGP_PahariEiJ_T0060350	-	279	-	MGP_PahariEiJ_P0060350	20 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0024580's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0024580's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0024580	Ptcd1	99	74.315	ENSG00000106246	PTCD1	99	74.315	Homo_sapiens
MGP_PahariEiJ_G0024580	Ptcd1	99	74.315	ENSG00000248919	ATP5MF-PTCD1	92	74.315	Homo_sapiens
MGP_PahariEiJ_G0024580	Ptcd1	80	47.143	ENSAPOG00000010679	ptcd1	85	47.143	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0024580	Ptcd1	100	77.589	ENSAMEG00000006224	-	93	77.447	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0024580	Ptcd1	88	49.361	ENSACIG00000017861	ptcd1	88	49.201	Amphilophus_citrinellus
MGP_PahariEiJ_G0024580	Ptcd1	88	44.839	ENSAOCG00000022617	ptcd1	89	44.839	Amphiprion_ocellaris
MGP_PahariEiJ_G0024580	Ptcd1	93	45.441	ENSAOCG00000020741	-	90	45.441	Amphiprion_ocellaris
MGP_PahariEiJ_G0024580	Ptcd1	93	45.289	ENSAPEG00000022632	ptcd1	90	45.289	Amphiprion_percula
MGP_PahariEiJ_G0024580	Ptcd1	89	48.232	ENSATEG00000007016	ptcd1	86	48.553	Anabas_testudineus
MGP_PahariEiJ_G0024580	Ptcd1	87	59.314	ENSAPLG00000006862	-	95	59.150	Anas_platyrhynchos
MGP_PahariEiJ_G0024580	Ptcd1	99	54.830	ENSACAG00000012871	-	92	54.830	Anolis_carolinensis
MGP_PahariEiJ_G0024580	Ptcd1	98	73.324	ENSANAG00000035790	-	100	73.178	Aotus_nancymaae
MGP_PahariEiJ_G0024580	Ptcd1	88	47.981	ENSACLG00000002824	ptcd1	84	47.496	Astatotilapia_calliptera
MGP_PahariEiJ_G0024580	Ptcd1	86	48.960	ENSAMXG00000037292	ptcd1	87	48.960	Astyanax_mexicanus
MGP_PahariEiJ_G0024580	Ptcd1	99	75.540	ENSBTAG00000020440	-	86	75.931	Bos_taurus
MGP_PahariEiJ_G0024580	Ptcd1	99	73.593	ENSCJAG00000015815	-	99	73.593	Callithrix_jacchus
MGP_PahariEiJ_G0024580	Ptcd1	99	76.691	ENSCAFG00000015055	-	92	76.547	Canis_familiaris
MGP_PahariEiJ_G0024580	Ptcd1	99	76.691	ENSCAFG00020014480	-	92	76.547	Canis_lupus_dingo
MGP_PahariEiJ_G0024580	Ptcd1	99	74.676	ENSCHIG00000027000	-	98	74.820	Capra_hircus
MGP_PahariEiJ_G0024580	Ptcd1	99	75.568	ENSTSYG00000029495	-	99	75.568	Carlito_syrichta
MGP_PahariEiJ_G0024580	Ptcd1	93	76.263	ENSCAPG00000014660	-	99	76.110	Cavia_aperea
MGP_PahariEiJ_G0024580	Ptcd1	99	75.036	ENSCPOG00000001780	-	99	74.893	Cavia_porcellus
MGP_PahariEiJ_G0024580	Ptcd1	99	72.845	ENSCCAG00000034025	-	99	73.055	Cebus_capucinus
MGP_PahariEiJ_G0024580	Ptcd1	99	74.747	ENSCATG00000040859	-	99	74.747	Cercocebus_atys
MGP_PahariEiJ_G0024580	Ptcd1	99	75.396	ENSCLAG00000006354	-	99	75.036	Chinchilla_lanigera
MGP_PahariEiJ_G0024580	Ptcd1	92	74.650	ENSCSAG00000017794	-	95	74.650	Chlorocebus_sabaeus
MGP_PahariEiJ_G0024580	Ptcd1	93	56.459	ENSCPBG00000020866	-	91	56.459	Chrysemys_picta_bellii
MGP_PahariEiJ_G0024580	Ptcd1	83	30.435	ENSCING00000007717	-	91	31.091	Ciona_intestinalis
MGP_PahariEiJ_G0024580	Ptcd1	99	74.240	ENSCANG00000023441	-	99	74.240	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0024580	Ptcd1	100	83.738	ENSCGRG00001023686	Ptcd1	100	83.738	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0024580	Ptcd1	99	82.979	ENSCGRG00000015031	Ptcd1	100	82.979	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0024580	Ptcd1	87	45.813	ENSCSEG00000002378	ptcd1	83	46.141	Cynoglossus_semilaevis
MGP_PahariEiJ_G0024580	Ptcd1	88	46.411	ENSCVAG00000015826	ptcd1	85	46.411	Cyprinodon_variegatus
MGP_PahariEiJ_G0024580	Ptcd1	88	46.635	ENSCVAG00000003621	ptcd1	89	46.635	Cyprinodon_variegatus
MGP_PahariEiJ_G0024580	Ptcd1	87	51.129	ENSDARG00000076176	ptcd1	88	50.485	Danio_rerio
MGP_PahariEiJ_G0024580	Ptcd1	100	72.958	ENSDNOG00000009957	-	100	73.840	Dasypus_novemcinctus
MGP_PahariEiJ_G0024580	Ptcd1	99	75.396	ENSDORG00000000740	Ptcd1	100	75.540	Dipodomys_ordii
MGP_PahariEiJ_G0024580	Ptcd1	93	40.371	ENSEBUG00000014515	ptcd1	96	42.531	Eptatretus_burgeri
MGP_PahariEiJ_G0024580	Ptcd1	100	76.934	ENSEASG00005002480	-	100	77.356	Equus_asinus_asinus
MGP_PahariEiJ_G0024580	Ptcd1	100	77.215	ENSECAG00000016617	-	100	77.637	Equus_caballus
MGP_PahariEiJ_G0024580	Ptcd1	88	46.177	ENSELUG00000016517	ptcd1	87	46.177	Esox_lucius
MGP_PahariEiJ_G0024580	Ptcd1	99	77.618	ENSFCAG00000015069	-	99	77.475	Felis_catus
MGP_PahariEiJ_G0024580	Ptcd1	87	59.048	ENSFALG00000013803	-	92	57.293	Ficedula_albicollis
MGP_PahariEiJ_G0024580	Ptcd1	99	75.501	ENSFDAG00000006393	-	99	75.501	Fukomys_damarensis
MGP_PahariEiJ_G0024580	Ptcd1	78	47.541	ENSFHEG00000012491	ptcd1	90	47.541	Fundulus_heteroclitus
MGP_PahariEiJ_G0024580	Ptcd1	84	46.747	ENSGMOG00000007639	ptcd1	93	46.747	Gadus_morhua
MGP_PahariEiJ_G0024580	Ptcd1	87	58.029	ENSGALG00000004711	-	87	58.188	Gallus_gallus
MGP_PahariEiJ_G0024580	Ptcd1	84	48.480	ENSGAFG00000013175	ptcd1	82	47.973	Gambusia_affinis
MGP_PahariEiJ_G0024580	Ptcd1	84	48.667	ENSGACG00000016607	ptcd1	89	49.408	Gasterosteus_aculeatus
MGP_PahariEiJ_G0024580	Ptcd1	88	57.440	ENSGAGG00000021832	-	93	57.440	Gopherus_agassizii
MGP_PahariEiJ_G0024580	Ptcd1	99	74.603	ENSGGOG00000015123	-	99	74.603	Gorilla_gorilla
MGP_PahariEiJ_G0024580	Ptcd1	88	47.981	ENSHBUG00000018275	ptcd1	84	47.658	Haplochromis_burtoni
MGP_PahariEiJ_G0024580	Ptcd1	99	76.149	ENSHGLG00000017621	-	99	76.149	Heterocephalus_glaber_female
MGP_PahariEiJ_G0024580	Ptcd1	99	76.149	ENSHGLG00100007218	-	99	76.149	Heterocephalus_glaber_male
MGP_PahariEiJ_G0024580	Ptcd1	86	45.987	ENSHCOG00000010784	ptcd1	84	46.500	Hippocampus_comes
MGP_PahariEiJ_G0024580	Ptcd1	99	74.608	ENSSTOG00000001682	-	99	74.750	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0024580	Ptcd1	99	77.601	ENSJJAG00000000319	Ptcd1	99	77.312	Jaculus_jaculus
MGP_PahariEiJ_G0024580	Ptcd1	96	46.074	ENSKMAG00000008708	ptcd1	93	46.074	Kryptolebias_marmoratus
MGP_PahariEiJ_G0024580	Ptcd1	90	46.939	ENSLBEG00000008061	ptcd1	89	45.166	Labrus_bergylta
MGP_PahariEiJ_G0024580	Ptcd1	87	56.796	ENSLACG00000011172	ptcd1	86	56.796	Latimeria_chalumnae
MGP_PahariEiJ_G0024580	Ptcd1	86	54.589	ENSLOCG00000004833	ptcd1	94	54.319	Lepisosteus_oculatus
MGP_PahariEiJ_G0024580	Ptcd1	100	69.761	ENSLAFG00000002588	-	100	69.480	Loxodonta_africana
MGP_PahariEiJ_G0024580	Ptcd1	99	74.892	ENSMFAG00000041324	-	99	74.892	Macaca_fascicularis
MGP_PahariEiJ_G0024580	Ptcd1	99	74.747	ENSMMUG00000030408	-	99	74.747	Macaca_mulatta
MGP_PahariEiJ_G0024580	Ptcd1	99	74.747	ENSMNEG00000043786	-	99	74.747	Macaca_nemestrina
MGP_PahariEiJ_G0024580	Ptcd1	99	56.421	ENSMLEG00000031179	-	98	56.854	Mandrillus_leucophaeus
MGP_PahariEiJ_G0024580	Ptcd1	85	49.251	ENSMAMG00000007623	ptcd1	81	49.336	Mastacembelus_armatus
MGP_PahariEiJ_G0024580	Ptcd1	88	47.981	ENSMZEG00005012722	ptcd1	84	47.658	Maylandia_zebra
MGP_PahariEiJ_G0024580	Ptcd1	99	53.662	ENSMGAG00000004211	-	92	53.662	Meleagris_gallopavo
MGP_PahariEiJ_G0024580	Ptcd1	99	75.862	ENSMICG00000017428	-	99	75.897	Microcebus_murinus
MGP_PahariEiJ_G0024580	Ptcd1	87	48.197	ENSMMOG00000020243	ptcd1	92	48.033	Mola_mola
MGP_PahariEiJ_G0024580	Ptcd1	99	57.880	ENSMODG00000001350	-	99	57.880	Monodelphis_domestica
MGP_PahariEiJ_G0024580	Ptcd1	89	48.567	ENSMALG00000018442	ptcd1	84	48.567	Monopterus_albus
MGP_PahariEiJ_G0024580	Ptcd1	99	94.813	MGP_CAROLIEiJ_G0028011	Ptcd1	99	94.813	Mus_caroli
MGP_PahariEiJ_G0024580	Ptcd1	99	93.948	ENSMUSG00000029624	Ptcd1	99	93.948	Mus_musculus
MGP_PahariEiJ_G0024580	Ptcd1	99	94.524	MGP_SPRETEiJ_G0029012	Ptcd1	99	94.524	Mus_spretus
MGP_PahariEiJ_G0024580	Ptcd1	100	77.447	ENSMPUG00000016518	-	100	77.589	Mustela_putorius_furo
MGP_PahariEiJ_G0024580	Ptcd1	100	77.652	ENSMLUG00000010994	-	94	77.935	Myotis_lucifugus
MGP_PahariEiJ_G0024580	Ptcd1	89	48.485	ENSNBRG00000010079	ptcd1	87	48.788	Neolamprologus_brichardi
MGP_PahariEiJ_G0024580	Ptcd1	81	75.355	ENSNLEG00000011060	-	93	75.355	Nomascus_leucogenys
MGP_PahariEiJ_G0024580	Ptcd1	98	61.328	ENSMEUG00000006930	-	99	61.328	Notamacropus_eugenii
MGP_PahariEiJ_G0024580	Ptcd1	89	73.634	ENSOPRG00000013647	-	88	73.634	Ochotona_princeps
MGP_PahariEiJ_G0024580	Ptcd1	88	47.317	ENSONIG00000003168	ptcd1	99	46.829	Oreochromis_niloticus
MGP_PahariEiJ_G0024580	Ptcd1	81	55.633	ENSOANG00000007728	-	74	55.633	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0024580	Ptcd1	99	72.857	ENSOCUG00000010584	-	97	72.714	Oryctolagus_cuniculus
MGP_PahariEiJ_G0024580	Ptcd1	89	48.320	ENSORLG00000009275	ptcd1	88	48.089	Oryzias_latipes
MGP_PahariEiJ_G0024580	Ptcd1	89	48.006	ENSORLG00020000988	ptcd1	88	47.611	Oryzias_latipes_hni
MGP_PahariEiJ_G0024580	Ptcd1	89	47.604	ENSORLG00015010557	ptcd1	88	47.368	Oryzias_latipes_hsok
MGP_PahariEiJ_G0024580	Ptcd1	90	47.022	ENSOMEG00000020627	ptcd1	91	46.562	Oryzias_melastigma
MGP_PahariEiJ_G0024580	Ptcd1	99	71.960	ENSOGAG00000010877	-	99	72.103	Otolemur_garnettii
MGP_PahariEiJ_G0024580	Ptcd1	99	70.402	ENSOARG00000018676	-	99	70.546	Ovis_aries
MGP_PahariEiJ_G0024580	Ptcd1	99	74.170	ENSPPAG00000036024	-	99	74.170	Pan_paniscus
MGP_PahariEiJ_G0024580	Ptcd1	99	78.324	ENSPPRG00000003478	-	99	78.179	Panthera_pardus
MGP_PahariEiJ_G0024580	Ptcd1	99	74.170	ENSPTRG00000019452	-	99	74.170	Pan_troglodytes
MGP_PahariEiJ_G0024580	Ptcd1	99	74.892	ENSPANG00000016730	-	99	74.892	Papio_anubis
MGP_PahariEiJ_G0024580	Ptcd1	85	53.679	ENSPKIG00000014215	ptcd1	86	53.679	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0024580	Ptcd1	85	58.902	ENSPSIG00000011184	-	100	59.401	Pelodiscus_sinensis
MGP_PahariEiJ_G0024580	Ptcd1	74	41.426	ENSPMAG00000009667	ptcd1	100	41.426	Petromyzon_marinus
MGP_PahariEiJ_G0024580	Ptcd1	86	65.865	ENSPCIG00000024778	-	97	59.371	Phascolarctos_cinereus
MGP_PahariEiJ_G0024580	Ptcd1	84	48.229	ENSPFOG00000004458	ptcd1	82	48.229	Poecilia_formosa
MGP_PahariEiJ_G0024580	Ptcd1	91	45.412	ENSPLAG00000011051	ptcd1	88	45.412	Poecilia_latipinna
MGP_PahariEiJ_G0024580	Ptcd1	84	48.398	ENSPMEG00000020547	ptcd1	82	48.398	Poecilia_mexicana
MGP_PahariEiJ_G0024580	Ptcd1	83	47.973	ENSPREG00000000059	ptcd1	83	47.746	Poecilia_reticulata
MGP_PahariEiJ_G0024580	Ptcd1	93	75.889	ENSPPYG00000017377	-	98	75.889	Pongo_abelii
MGP_PahariEiJ_G0024580	Ptcd1	80	72.986	ENSPCAG00000001852	-	87	72.986	Procavia_capensis
MGP_PahariEiJ_G0024580	Ptcd1	100	75.852	ENSPCOG00000018596	-	100	75.887	Propithecus_coquereli
MGP_PahariEiJ_G0024580	Ptcd1	67	85.000	ENSPVAG00000007529	-	73	85.000	Pteropus_vampyrus
MGP_PahariEiJ_G0024580	Ptcd1	88	47.981	ENSPNYG00000019993	ptcd1	84	48.465	Pundamilia_nyererei
MGP_PahariEiJ_G0024580	Ptcd1	95	50.597	ENSPNAG00000014931	ptcd1	97	49.495	Pygocentrus_nattereri
MGP_PahariEiJ_G0024580	Ptcd1	99	87.752	ENSRNOG00000000987	Ptcd1	99	87.752	Rattus_norvegicus
MGP_PahariEiJ_G0024580	Ptcd1	99	74.530	ENSRBIG00000043393	-	99	74.530	Rhinopithecus_bieti
MGP_PahariEiJ_G0024580	Ptcd1	99	74.674	ENSRROG00000036420	-	99	74.674	Rhinopithecus_roxellana
MGP_PahariEiJ_G0024580	Ptcd1	99	74.277	ENSSBOG00000024114	-	99	74.133	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0024580	Ptcd1	99	55.846	ENSSHAG00000011376	-	93	62.114	Sarcophilus_harrisii
MGP_PahariEiJ_G0024580	Ptcd1	90	53.416	ENSSFOG00015007909	ptcd1	86	54.037	Scleropages_formosus
MGP_PahariEiJ_G0024580	Ptcd1	86	45.928	ENSSMAG00000000218	ptcd1	94	45.928	Scophthalmus_maximus
MGP_PahariEiJ_G0024580	Ptcd1	94	47.147	ENSSDUG00000015671	ptcd1	90	47.014	Seriola_dumerili
MGP_PahariEiJ_G0024580	Ptcd1	85	49.664	ENSSLDG00000014261	ptcd1	83	49.161	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0024580	Ptcd1	96	54.070	ENSSPUG00000003540	-	93	54.215	Sphenodon_punctatus
MGP_PahariEiJ_G0024580	Ptcd1	84	48.993	ENSSPAG00000011049	ptcd1	80	49.497	Stegastes_partitus
MGP_PahariEiJ_G0024580	Ptcd1	92	77.504	ENSSSCG00000007622	-	99	76.631	Sus_scrofa
MGP_PahariEiJ_G0024580	Ptcd1	87	59.868	ENSTGUG00000007563	-	99	60.362	Taeniopygia_guttata
MGP_PahariEiJ_G0024580	Ptcd1	84	47.359	ENSTRUG00000013471	ptcd1	79	47.530	Takifugu_rubripes
MGP_PahariEiJ_G0024580	Ptcd1	90	45.298	ENSTNIG00000008271	ptcd1	90	45.298	Tetraodon_nigroviridis
MGP_PahariEiJ_G0024580	Ptcd1	99	74.290	ENSTBEG00000011021	-	99	74.148	Tupaia_belangeri
MGP_PahariEiJ_G0024580	Ptcd1	99	74.282	ENSTTRG00000003006	-	99	74.138	Tursiops_truncatus
MGP_PahariEiJ_G0024580	Ptcd1	100	77.730	ENSUAMG00000008049	-	100	77.589	Ursus_americanus
MGP_PahariEiJ_G0024580	Ptcd1	99	77.312	ENSVVUG00000008836	-	99	77.168	Vulpes_vulpes
MGP_PahariEiJ_G0024580	Ptcd1	94	51.145	ENSXETG00000009891	ptcd1	96	50.074	Xenopus_tropicalis
MGP_PahariEiJ_G0024580	Ptcd1	91	46.490	ENSXMAG00000015540	ptcd1	87	46.646	Xiphophorus_maculatus