EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0024600 (Gene tree)
Gene ID: 110312847
Gene Symbol: Polr1d
Alias: 1110003G10Rik|16kDa|Rpo1-3|mRPA16
Full Name: RNA polymerase I and III subunit D
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 38791 bases
Position: chr23:37151415-37190205
Accession: 110312846
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0060429	RNA_pol_L_2	PF13656.6	1.6e-27	1	1
MGP_PahariEiJ_P0060429	RNA_pol_L	PF01193.24	1.7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0060429	-	1199	-	MGP_PahariEiJ_P0060429	133 (aa)	XP_021042422	UPI000A307561
MGP_PahariEiJ_T0060432	-	1353	-	MGP_PahariEiJ_P0060432	42 (aa)	-	-
MGP_PahariEiJ_T0060433	-	364	-	-	- (aa)	-	-
MGP_PahariEiJ_T0060430	-	1142	XM_021186765	MGP_PahariEiJ_P0060430	126 (aa)	XP_021042424	UPI000A304F88
MGP_PahariEiJ_T0060431	-	1167	-	MGP_PahariEiJ_P0060431	33 (aa)	-	UPI00064548A9
MGP_PahariEiJ_T0060434	-	843	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0024600's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0024600's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0024600	Polr1d	77	33.010	MGP_PahariEiJ_G0024434	Polr2j	85	33.010

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSG00000186184	POLR1D	100	89.474	Homo_sapiens
MGP_PahariEiJ_G0024600	Polr1d	76	68.317	ENSAPOG00000021882	polr1d	94	69.000	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0024600	Polr1d	94	89.600	ENSAMEG00000019095	POLR1D	100	89.600	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0024600	Polr1d	75	72.000	ENSACIG00000013328	polr1d	87	72.000	Amphilophus_citrinellus
MGP_PahariEiJ_G0024600	Polr1d	82	66.972	ENSAOCG00000018500	polr1d	96	66.972	Amphiprion_ocellaris
MGP_PahariEiJ_G0024600	Polr1d	78	69.231	ENSAPEG00000009489	polr1d	91	69.231	Amphiprion_percula
MGP_PahariEiJ_G0024600	Polr1d	80	64.486	ENSATEG00000019322	polr1d	94	64.762	Anabas_testudineus
MGP_PahariEiJ_G0024600	Polr1d	80	66.038	ENSACAG00000015753	POLR1D	91	66.038	Anolis_carolinensis
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSANAG00000024486	POLR1D	100	89.474	Aotus_nancymaae
MGP_PahariEiJ_G0024600	Polr1d	77	71.569	ENSACLG00000023805	polr1d	94	68.224	Astatotilapia_calliptera
MGP_PahariEiJ_G0024600	Polr1d	82	66.972	ENSAMXG00000036118	polr1d	95	66.972	Astyanax_mexicanus
MGP_PahariEiJ_G0024600	Polr1d	100	86.466	ENSBTAG00000033252	-	100	86.466	Bos_taurus
MGP_PahariEiJ_G0024600	Polr1d	100	86.466	ENSBTAG00000008642	POLR1D	100	86.466	Bos_taurus
MGP_PahariEiJ_G0024600	Polr1d	62	39.024	WBGene00010230	rpac-19	57	39.024	Caenorhabditis_elegans
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSCJAG00000044669	POLR1D	100	89.474	Callithrix_jacchus
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSCAFG00000006755	POLR1D	100	89.474	Canis_familiaris
MGP_PahariEiJ_G0024600	Polr1d	100	87.218	ENSCHIG00000021910	POLR1D	100	87.218	Capra_hircus
MGP_PahariEiJ_G0024600	Polr1d	93	85.484	ENSTSYG00000026817	-	93	85.484	Carlito_syrichta
MGP_PahariEiJ_G0024600	Polr1d	99	73.134	ENSTSYG00000034852	-	99	73.134	Carlito_syrichta
MGP_PahariEiJ_G0024600	Polr1d	97	51.938	ENSCAPG00000006058	-	100	51.938	Cavia_aperea
MGP_PahariEiJ_G0024600	Polr1d	97	52.713	ENSCPOG00000030450	-	100	52.713	Cavia_porcellus
MGP_PahariEiJ_G0024600	Polr1d	100	87.970	ENSCCAG00000021349	-	100	87.970	Cebus_capucinus
MGP_PahariEiJ_G0024600	Polr1d	100	72.932	ENSCCAG00000020191	-	100	72.932	Cebus_capucinus
MGP_PahariEiJ_G0024600	Polr1d	100	77.444	ENSCATG00000022900	-	100	77.444	Cercocebus_atys
MGP_PahariEiJ_G0024600	Polr1d	100	87.970	ENSCATG00000030710	-	100	87.970	Cercocebus_atys
MGP_PahariEiJ_G0024600	Polr1d	93	88.710	ENSCLAG00000017623	POLR1D	100	88.710	Chinchilla_lanigera
MGP_PahariEiJ_G0024600	Polr1d	73	74.227	ENSCPBG00000004719	POLR1D	96	74.227	Chrysemys_picta_bellii
MGP_PahariEiJ_G0024600	Polr1d	100	84.962	ENSCANG00000037694	-	100	84.962	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0024600	Polr1d	100	87.970	ENSCANG00000028632	-	100	87.970	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0024600	Polr1d	100	90.977	ENSCGRG00001021251	Polr1d	100	90.977	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0024600	Polr1d	100	90.977	ENSCGRG00000011639	Polr1d	100	90.977	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0024600	Polr1d	85	62.832	ENSCSEG00000018268	polr1d	97	62.832	Cynoglossus_semilaevis
MGP_PahariEiJ_G0024600	Polr1d	78	70.192	ENSCVAG00000018527	polr1d	91	70.192	Cyprinodon_variegatus
MGP_PahariEiJ_G0024600	Polr1d	83	63.636	ENSDARG00000037570	polr1d	98	63.636	Danio_rerio
MGP_PahariEiJ_G0024600	Polr1d	100	87.218	ENSDNOG00000043676	-	100	87.218	Dasypus_novemcinctus
MGP_PahariEiJ_G0024600	Polr1d	100	85.075	ENSDNOG00000046247	-	100	85.075	Dasypus_novemcinctus
MGP_PahariEiJ_G0024600	Polr1d	100	90.226	ENSDORG00000029155	Polr1d	100	90.226	Dipodomys_ordii
MGP_PahariEiJ_G0024600	Polr1d	65	45.349	FBgn0086447	l(2)37Cg	80	45.882	Drosophila_melanogaster
MGP_PahariEiJ_G0024600	Polr1d	93	83.065	ENSETEG00000012797	POLR1D	100	83.065	Echinops_telfairi
MGP_PahariEiJ_G0024600	Polr1d	65	68.966	ENSEBUG00000011748	polr1d	61	68.966	Eptatretus_burgeri
MGP_PahariEiJ_G0024600	Polr1d	97	89.922	ENSEASG00005022487	POLR1D	100	89.922	Equus_asinus_asinus
MGP_PahariEiJ_G0024600	Polr1d	93	88.710	ENSEEUG00000013144	POLR1D	100	88.710	Erinaceus_europaeus
MGP_PahariEiJ_G0024600	Polr1d	80	65.094	ENSELUG00000005105	rpac2	93	65.094	Esox_lucius
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSFCAG00000030162	POLR1D	100	89.474	Felis_catus
MGP_PahariEiJ_G0024600	Polr1d	72	75.000	ENSFALG00000011463	POLR1D	95	75.000	Ficedula_albicollis
MGP_PahariEiJ_G0024600	Polr1d	100	88.722	ENSFDAG00000004463	POLR1D	100	88.722	Fukomys_damarensis
MGP_PahariEiJ_G0024600	Polr1d	80	72.897	ENSFHEG00000015410	polr1d	93	72.897	Fundulus_heteroclitus
MGP_PahariEiJ_G0024600	Polr1d	54	63.889	ENSGALG00000007470	POLR1D	71	63.889	Gallus_gallus
MGP_PahariEiJ_G0024600	Polr1d	78	71.154	ENSGAFG00000001693	polr1d	91	71.154	Gambusia_affinis
MGP_PahariEiJ_G0024600	Polr1d	88	66.102	ENSGACG00000018585	polr1d	100	66.102	Gasterosteus_aculeatus
MGP_PahariEiJ_G0024600	Polr1d	82	73.394	ENSGAGG00000008503	POLR1D	96	73.394	Gopherus_agassizii
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSGGOG00000004235	POLR1D	100	89.474	Gorilla_gorilla
MGP_PahariEiJ_G0024600	Polr1d	80	68.224	ENSHBUG00000002111	polr1d	94	68.224	Haplochromis_burtoni
MGP_PahariEiJ_G0024600	Polr1d	100	88.722	ENSHGLG00000003202	POLR1D	100	88.722	Heterocephalus_glaber_female
MGP_PahariEiJ_G0024600	Polr1d	100	88.722	ENSHGLG00100009393	POLR1D	100	88.722	Heterocephalus_glaber_male
MGP_PahariEiJ_G0024600	Polr1d	80	67.290	ENSHCOG00000003258	polr1d	94	67.290	Hippocampus_comes
MGP_PahariEiJ_G0024600	Polr1d	79	71.429	ENSIPUG00000014810	polr1d	91	71.429	Ictalurus_punctatus
MGP_PahariEiJ_G0024600	Polr1d	100	90.226	ENSSTOG00000013877	POLR1D	100	90.226	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0024600	Polr1d	97	85.714	ENSJJAG00000022671	-	100	88.333	Jaculus_jaculus
MGP_PahariEiJ_G0024600	Polr1d	95	69.841	ENSJJAG00000021667	-	75	69.841	Jaculus_jaculus
MGP_PahariEiJ_G0024600	Polr1d	80	66.038	ENSKMAG00000015256	polr1d	93	66.038	Kryptolebias_marmoratus
MGP_PahariEiJ_G0024600	Polr1d	78	69.231	ENSLBEG00000015919	polr1d	91	69.231	Labrus_bergylta
MGP_PahariEiJ_G0024600	Polr1d	87	63.793	ENSLACG00000006810	POLR1D	96	63.793	Latimeria_chalumnae
MGP_PahariEiJ_G0024600	Polr1d	54	75.676	ENSLOCG00000014976	polr1d	100	75.676	Lepisosteus_oculatus
MGP_PahariEiJ_G0024600	Polr1d	100	84.211	ENSLAFG00000032290	POLR1D	100	84.211	Loxodonta_africana
MGP_PahariEiJ_G0024600	Polr1d	94	88.000	ENSMFAG00000045264	POLR1D	97	88.000	Macaca_fascicularis
MGP_PahariEiJ_G0024600	Polr1d	87	87.931	ENSMMUG00000020386	POLR1D	100	87.931	Macaca_mulatta
MGP_PahariEiJ_G0024600	Polr1d	100	69.173	ENSMMUG00000041570	-	100	69.173	Macaca_mulatta
MGP_PahariEiJ_G0024600	Polr1d	100	88.722	ENSMNEG00000008630	-	100	88.722	Macaca_nemestrina
MGP_PahariEiJ_G0024600	Polr1d	100	72.932	ENSMNEG00000038120	-	100	72.932	Macaca_nemestrina
MGP_PahariEiJ_G0024600	Polr1d	100	78.195	ENSMLEG00000032251	-	100	78.195	Mandrillus_leucophaeus
MGP_PahariEiJ_G0024600	Polr1d	100	88.722	ENSMLEG00000041048	-	100	88.722	Mandrillus_leucophaeus
MGP_PahariEiJ_G0024600	Polr1d	76	68.317	ENSMAMG00000014834	polr1d	94	68.317	Mastacembelus_armatus
MGP_PahariEiJ_G0024600	Polr1d	77	71.569	ENSMZEG00005006638	polr1d	90	71.569	Maylandia_zebra
MGP_PahariEiJ_G0024600	Polr1d	69	75.000	ENSMGAG00000005322	POLR1D	84	75.000	Meleagris_gallopavo
MGP_PahariEiJ_G0024600	Polr1d	100	90.977	ENSMAUG00000001946	Polr1d	100	90.977	Mesocricetus_auratus
MGP_PahariEiJ_G0024600	Polr1d	99	75.758	ENSMICG00000007349	-	100	75.758	Microcebus_murinus
MGP_PahariEiJ_G0024600	Polr1d	100	88.722	ENSMICG00000016883	-	100	88.722	Microcebus_murinus
MGP_PahariEiJ_G0024600	Polr1d	99	90.909	ENSMOCG00000021288	Polr1d	99	90.909	Microtus_ochrogaster
MGP_PahariEiJ_G0024600	Polr1d	80	67.290	ENSMMOG00000009605	polr1d	94	67.290	Mola_mola
MGP_PahariEiJ_G0024600	Polr1d	80	80.189	ENSMODG00000023881	POLR1D	93	80.189	Monodelphis_domestica
MGP_PahariEiJ_G0024600	Polr1d	80	64.486	ENSMALG00000010652	polr1d	94	64.486	Monopterus_albus
MGP_PahariEiJ_G0024600	Polr1d	100	98.496	MGP_CAROLIEiJ_G0028034	Polr1d	100	98.496	Mus_caroli
MGP_PahariEiJ_G0024600	Polr1d	100	99.248	ENSMUSG00000029642	Polr1d	100	99.248	Mus_musculus
MGP_PahariEiJ_G0024600	Polr1d	100	98.496	MGP_SPRETEiJ_G0029032	Polr1d	100	98.496	Mus_spretus
MGP_PahariEiJ_G0024600	Polr1d	99	78.030	ENSMLUG00000004118	-	99	78.030	Myotis_lucifugus
MGP_PahariEiJ_G0024600	Polr1d	100	87.218	ENSMLUG00000027169	-	100	87.218	Myotis_lucifugus
MGP_PahariEiJ_G0024600	Polr1d	87	88.793	ENSNGAG00000006014	Polr1d	100	88.793	Nannospalax_galili
MGP_PahariEiJ_G0024600	Polr1d	80	68.224	ENSNBRG00000020327	polr1d	94	68.224	Neolamprologus_brichardi
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSNLEG00000000358	POLR1D	100	89.474	Nomascus_leucogenys
MGP_PahariEiJ_G0024600	Polr1d	100	87.970	ENSODEG00000005294	-	100	87.970	Octodon_degus
MGP_PahariEiJ_G0024600	Polr1d	100	74.436	ENSODEG00000014801	-	100	74.436	Octodon_degus
MGP_PahariEiJ_G0024600	Polr1d	77	80.583	ENSOANG00000008708	-	95	80.583	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSOCUG00000015706	POLR1D	82	89.474	Oryctolagus_cuniculus
MGP_PahariEiJ_G0024600	Polr1d	80	67.290	ENSORLG00000010257	polr1d	94	67.290	Oryzias_latipes
MGP_PahariEiJ_G0024600	Polr1d	84	65.179	ENSORLG00020000533	polr1d	76	65.179	Oryzias_latipes_hni
MGP_PahariEiJ_G0024600	Polr1d	86	65.789	ENSORLG00015013267	polr1d	75	65.789	Oryzias_latipes_hsok
MGP_PahariEiJ_G0024600	Polr1d	89	64.407	ENSOMEG00000014912	polr1d	79	64.407	Oryzias_melastigma
MGP_PahariEiJ_G0024600	Polr1d	100	90.226	ENSOGAG00000014601	POLR1D	100	90.226	Otolemur_garnettii
MGP_PahariEiJ_G0024600	Polr1d	94	87.200	ENSOARG00000017005	POLR1D	96	87.200	Ovis_aries
MGP_PahariEiJ_G0024600	Polr1d	100	88.722	ENSPPAG00000028138	POLR1D	100	88.722	Pan_paniscus
MGP_PahariEiJ_G0024600	Polr1d	99	89.394	ENSPPRG00000003381	POLR1D	99	89.394	Panthera_pardus
MGP_PahariEiJ_G0024600	Polr1d	93	89.516	ENSPTIG00000018137	POLR1D	93	89.516	Panthera_tigris_altaica
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSPTRG00000005734	POLR1D	100	89.474	Pan_troglodytes
MGP_PahariEiJ_G0024600	Polr1d	100	78.195	ENSPANG00000035051	-	100	78.195	Papio_anubis
MGP_PahariEiJ_G0024600	Polr1d	100	88.722	ENSPANG00000020259	-	100	88.722	Papio_anubis
MGP_PahariEiJ_G0024600	Polr1d	86	61.739	ENSPKIG00000021891	polr1d	91	51.304	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0024600	Polr1d	83	74.107	ENSPSIG00000011822	POLR1D	87	74.107	Pelodiscus_sinensis
MGP_PahariEiJ_G0024600	Polr1d	78	68.269	ENSPMGG00000010359	polr1d	90	68.269	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0024600	Polr1d	87	58.120	ENSPMGG00000012998	POLR1D	86	58.120	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0024600	Polr1d	100	87.218	ENSPEMG00000006336	-	100	87.218	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0024600	Polr1d	83	56.250	ENSPMAG00000004228	polr1d	94	56.250	Petromyzon_marinus
MGP_PahariEiJ_G0024600	Polr1d	80	80.189	ENSPCIG00000001673	POLR1D	93	80.189	Phascolarctos_cinereus
MGP_PahariEiJ_G0024600	Polr1d	78	71.154	ENSPFOG00000023343	polr1d	91	72.152	Poecilia_formosa
MGP_PahariEiJ_G0024600	Polr1d	78	71.154	ENSPLAG00000009675	polr1d	91	71.154	Poecilia_latipinna
MGP_PahariEiJ_G0024600	Polr1d	78	71.154	ENSPMEG00000004628	polr1d	91	71.154	Poecilia_mexicana
MGP_PahariEiJ_G0024600	Polr1d	78	71.154	ENSPREG00000022032	polr1d	91	71.154	Poecilia_reticulata
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSPCOG00000028175	POLR1D	100	89.474	Propithecus_coquereli
MGP_PahariEiJ_G0024600	Polr1d	80	68.224	ENSPNYG00000000107	polr1d	94	68.224	Pundamilia_nyererei
MGP_PahariEiJ_G0024600	Polr1d	79	65.714	ENSPNAG00000001512	polr1d	91	64.815	Pygocentrus_nattereri
MGP_PahariEiJ_G0024600	Polr1d	100	85.714	ENSRBIG00000000336	-	100	85.714	Rhinopithecus_bieti
MGP_PahariEiJ_G0024600	Polr1d	100	88.722	ENSRBIG00000036378	-	100	88.722	Rhinopithecus_bieti
MGP_PahariEiJ_G0024600	Polr1d	100	88.722	ENSRROG00000042232	-	100	88.722	Rhinopithecus_roxellana
MGP_PahariEiJ_G0024600	Polr1d	100	84.962	ENSRROG00000026751	-	100	84.962	Rhinopithecus_roxellana
MGP_PahariEiJ_G0024600	Polr1d	89	44.538	YNL113W	RPC19	84	44.538	Saccharomyces_cerevisiae
MGP_PahariEiJ_G0024600	Polr1d	86	86.842	ENSSBOG00000030146	-	84	86.842	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSSBOG00000028482	-	100	89.474	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0024600	Polr1d	86	74.561	ENSSHAG00000001190	POLR1D	88	74.561	Sarcophilus_harrisii
MGP_PahariEiJ_G0024600	Polr1d	82	70.642	ENSSFOG00015011375	polr1d	96	70.642	Scleropages_formosus
MGP_PahariEiJ_G0024600	Polr1d	80	66.355	ENSSMAG00000011861	polr1d	94	66.355	Scophthalmus_maximus
MGP_PahariEiJ_G0024600	Polr1d	80	64.486	ENSSDUG00000011930	polr1d	94	64.486	Seriola_dumerili
MGP_PahariEiJ_G0024600	Polr1d	86	60.870	ENSSLDG00000023871	polr1d	97	60.870	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0024600	Polr1d	100	90.226	ENSSARG00000007840	POLR1D	100	90.226	Sorex_araneus
MGP_PahariEiJ_G0024600	Polr1d	75	75.000	ENSSPUG00000005786	POLR1D	91	71.698	Sphenodon_punctatus
MGP_PahariEiJ_G0024600	Polr1d	78	70.192	ENSSPAG00000011764	polr1d	91	70.192	Stegastes_partitus
MGP_PahariEiJ_G0024600	Polr1d	100	87.970	ENSSSCG00000009310	POLR1D	100	87.970	Sus_scrofa
MGP_PahariEiJ_G0024600	Polr1d	72	75.000	ENSTGUG00000005450	POLR1D	100	75.000	Taeniopygia_guttata
MGP_PahariEiJ_G0024600	Polr1d	77	65.049	ENSTRUG00000019741	polr1d	90	65.049	Takifugu_rubripes
MGP_PahariEiJ_G0024600	Polr1d	93	89.516	ENSTBEG00000007006	POLR1D	100	89.516	Tupaia_belangeri
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSUAMG00000011413	POLR1D	100	89.474	Ursus_americanus
MGP_PahariEiJ_G0024600	Polr1d	93	89.516	ENSUMAG00000016968	POLR1D	97	89.516	Ursus_maritimus
MGP_PahariEiJ_G0024600	Polr1d	100	89.474	ENSVVUG00000009216	POLR1D	100	89.474	Vulpes_vulpes
MGP_PahariEiJ_G0024600	Polr1d	74	73.469	ENSXCOG00000011731	polr1d	75	73.469	Xiphophorus_couchianus
MGP_PahariEiJ_G0024600	Polr1d	74	73.469	ENSXMAG00000017538	polr1d	75	73.469	Xiphophorus_maculatus