EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0024821 (Gene tree)
Gene ID: 110317738
Gene Symbol: Setx
Alias: A930037J23Rik|Als4
Full Name: senataxin
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 54913 bases
Position: chr3:16405500-16460412
Accession: 110317738
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0061641	SEN1_N	PF12726.7	3.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0061642	-	543	-	-	- (aa)	-	-
MGP_PahariEiJ_T0061643	-	584	-	-	- (aa)	-	-
MGP_PahariEiJ_T0061640	-	527	-	MGP_PahariEiJ_P0061640	81 (aa)	-	-
MGP_PahariEiJ_T0061641	-	10958	-	MGP_PahariEiJ_P0061641	2644 (aa)	XP_021048083	UPI000A308382
MGP_PahariEiJ_T0061644	-	1141	-	MGP_PahariEiJ_P0061644	380 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0024821's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0024821's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0024821	Setx	100	72.080	ENSG00000107290	SETX	100	78.864	Homo_sapiens
MGP_PahariEiJ_G0024821	Setx	77	44.152	ENSAMXG00000014406	-	84	44.152	Astyanax_mexicanus
MGP_PahariEiJ_G0024821	Setx	100	71.720	ENSCJAG00000018245	SETX	100	71.572	Callithrix_jacchus
MGP_PahariEiJ_G0024821	Setx	100	68.089	ENSCPOG00000001492	SETX	99	67.941	Cavia_porcellus
MGP_PahariEiJ_G0024821	Setx	97	70.061	ENSCLAG00000012582	SETX	99	70.050	Chinchilla_lanigera
MGP_PahariEiJ_G0024821	Setx	72	91.045	ENSETEG00000008111	-	72	91.045	Echinops_telfairi
MGP_PahariEiJ_G0024821	Setx	91	73.510	ENSECAG00000012019	SETX	99	74.000	Equus_caballus
MGP_PahariEiJ_G0024821	Setx	77	45.318	ENSELUG00000022536	-	81	45.318	Esox_lucius
MGP_PahariEiJ_G0024821	Setx	100	70.953	ENSFCAG00000007102	SETX	100	70.658	Felis_catus
MGP_PahariEiJ_G0024821	Setx	79	69.634	ENSFALG00000001464	SETX	82	69.634	Ficedula_albicollis
MGP_PahariEiJ_G0024821	Setx	100	70.819	ENSGGOG00000027664	SETX	93	82.973	Gorilla_gorilla
MGP_PahariEiJ_G0024821	Setx	81	54.823	ENSLOCG00000004264	SETX	83	54.823	Lepisosteus_oculatus
MGP_PahariEiJ_G0024821	Setx	99	79.135	ENSMOCG00000000848	Setx	99	79.831	Microtus_ochrogaster
MGP_PahariEiJ_G0024821	Setx	99	71.519	ENSNLEG00000012839	SETX	100	71.440	Nomascus_leucogenys
MGP_PahariEiJ_G0024821	Setx	93	68.750	ENSOCUG00000005616	SETX	95	67.934	Oryctolagus_cuniculus
MGP_PahariEiJ_G0024821	Setx	99	72.100	ENSOGAG00000013387	SETX	99	71.953	Otolemur_garnettii
MGP_PahariEiJ_G0024821	Setx	100	71.699	ENSPPAG00000004108	SETX	93	82.211	Pan_paniscus
MGP_PahariEiJ_G0024821	Setx	100	71.101	ENSPPRG00000012867	SETX	100	70.769	Panthera_pardus
MGP_PahariEiJ_G0024821	Setx	100	70.621	ENSPTIG00000021101	SETX	100	70.547	Panthera_tigris_altaica
MGP_PahariEiJ_G0024821	Setx	100	71.662	ENSPTRG00000021495	SETX	93	82.211	Pan_troglodytes
MGP_PahariEiJ_G0024821	Setx	77	49.583	ENSPKIG00000025162	SETX	77	50.334	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0024821	Setx	59	93.103	ENSSARG00000002336	-	64	93.103	Sorex_araneus
MGP_PahariEiJ_G0024821	Setx	83	72.819	ENSSPUG00000016332	SETX	84	72.819	Sphenodon_punctatus
MGP_PahariEiJ_G0024821	Setx	99	68.532	ENSSSCG00000005724	SETX	99	68.261	Sus_scrofa
MGP_PahariEiJ_G0024821	Setx	79	71.000	ENSTGUG00000005117	SETX	81	70.376	Taeniopygia_guttata
MGP_PahariEiJ_G0024821	Setx	78	62.420	ENSXETG00000006254	setx	84	62.420	Xenopus_tropicalis