EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0025006 (Gene tree)
Gene ID: 110317875
Gene Symbol: Rif1
Alias: 5730435J01Rik|6530403D07Rik|D2Ertd145e
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 55972 bases
Position: chr3:38753650-38809621
Accession: 110317875
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0062743	Rif1_N	PF12231.8	4.4e-61	1	1
MGP_PahariEiJ_P0062744	Rif1_N	PF12231.8	4.4e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0062748	-	3582	-	-	- (aa)	-	-
MGP_PahariEiJ_T0062749	-	3874	-	-	- (aa)	-	-
MGP_PahariEiJ_T0062746	-	2800	-	-	- (aa)	-	-
MGP_PahariEiJ_T0062747	-	742	-	-	- (aa)	-	-
MGP_PahariEiJ_T0062744	-	8320	XM_021192695	MGP_PahariEiJ_P0062744	2368 (aa)	XP_021048354	-
MGP_PahariEiJ_T0062745	-	321	-	-	- (aa)	-	-
MGP_PahariEiJ_T0062742	-	12442	-	MGP_PahariEiJ_P0062742	2367 (aa)	-	-
MGP_PahariEiJ_T0062743	-	8325	-	MGP_PahariEiJ_P0062743	2368 (aa)	-	-
MGP_PahariEiJ_T0062750	-	2771	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0025006's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0025006's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0025006	Rif1	100	68.092	ENSG00000080345	RIF1	97	79.927	Homo_sapiens
MGP_PahariEiJ_G0025006	Rif1	52	45.879	ENSAPOG00000011073	rif1	51	45.879	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0025006	Rif1	100	68.907	ENSAMEG00000008461	RIF1	100	68.907	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0025006	Rif1	71	46.489	ENSACIG00000017765	rif1	75	46.119	Amphilophus_citrinellus
MGP_PahariEiJ_G0025006	Rif1	63	45.840	ENSAOCG00000017231	rif1	63	45.120	Amphiprion_ocellaris
MGP_PahariEiJ_G0025006	Rif1	63	49.877	ENSAPEG00000013228	rif1	62	48.100	Amphiprion_percula
MGP_PahariEiJ_G0025006	Rif1	72	44.848	ENSATEG00000022887	rif1	70	43.519	Anabas_testudineus
MGP_PahariEiJ_G0025006	Rif1	87	66.082	ENSAPLG00000007092	RIF1	96	66.082	Anas_platyrhynchos
MGP_PahariEiJ_G0025006	Rif1	85	58.383	ENSACAG00000003714	RIF1	91	58.383	Anolis_carolinensis
MGP_PahariEiJ_G0025006	Rif1	100	67.689	ENSANAG00000024840	RIF1	99	67.689	Aotus_nancymaae
MGP_PahariEiJ_G0025006	Rif1	74	45.348	ENSAMXG00000010910	rif1	68	49.049	Astyanax_mexicanus
MGP_PahariEiJ_G0025006	Rif1	91	86.224	ENSBTAG00000021020	RIF1	99	86.224	Bos_taurus
MGP_PahariEiJ_G0025006	Rif1	100	67.340	ENSCJAG00000003138	RIF1	99	67.340	Callithrix_jacchus
MGP_PahariEiJ_G0025006	Rif1	100	66.413	ENSCAFG00000005670	RIF1	97	66.734	Canis_familiaris
MGP_PahariEiJ_G0025006	Rif1	100	67.127	ENSCAFG00020016401	RIF1	99	67.453	Canis_lupus_dingo
MGP_PahariEiJ_G0025006	Rif1	100	67.945	ENSCHIG00000020327	RIF1	99	67.811	Capra_hircus
MGP_PahariEiJ_G0025006	Rif1	99	65.822	ENSTSYG00000008861	RIF1	100	65.822	Carlito_syrichta
MGP_PahariEiJ_G0025006	Rif1	79	79.070	ENSCAPG00000008957	RIF1	96	79.070	Cavia_aperea
MGP_PahariEiJ_G0025006	Rif1	100	66.477	ENSCPOG00000037898	RIF1	99	66.599	Cavia_porcellus
MGP_PahariEiJ_G0025006	Rif1	100	66.640	ENSCCAG00000024760	RIF1	99	66.640	Cebus_capucinus
MGP_PahariEiJ_G0025006	Rif1	100	68.523	ENSCATG00000033353	RIF1	99	68.563	Cercocebus_atys
MGP_PahariEiJ_G0025006	Rif1	96	66.555	ENSCLAG00000001517	RIF1	99	66.737	Chinchilla_lanigera
MGP_PahariEiJ_G0025006	Rif1	100	68.442	ENSCSAG00000016089	RIF1	99	68.483	Chlorocebus_sabaeus
MGP_PahariEiJ_G0025006	Rif1	97	71.739	ENSCHOG00000007187	RIF1	95	71.739	Choloepus_hoffmanni
MGP_PahariEiJ_G0025006	Rif1	89	67.761	ENSCPBG00000025885	RIF1	95	68.955	Chrysemys_picta_bellii
MGP_PahariEiJ_G0025006	Rif1	100	67.285	ENSCANG00000028962	RIF1	100	67.749	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0025006	Rif1	100	78.256	ENSCGRG00001024589	Rif1	100	78.551	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0025006	Rif1	99	78.998	ENSCGRG00000010713	Rif1	100	79.296	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0025006	Rif1	58	43.641	ENSCSEG00000003945	rif1	54	46.184	Cynoglossus_semilaevis
MGP_PahariEiJ_G0025006	Rif1	67	46.393	ENSCVAG00000022479	rif1	74	45.539	Cyprinodon_variegatus
MGP_PahariEiJ_G0025006	Rif1	51	48.523	ENSDARG00000062650	rif1	53	48.228	Danio_rerio
MGP_PahariEiJ_G0025006	Rif1	99	66.209	ENSDNOG00000011194	RIF1	97	66.168	Dasypus_novemcinctus
MGP_PahariEiJ_G0025006	Rif1	90	78.571	ENSETEG00000012421	RIF1	88	78.571	Echinops_telfairi
MGP_PahariEiJ_G0025006	Rif1	96	79.552	ENSEASG00005023434	RIF1	99	79.552	Equus_asinus_asinus
MGP_PahariEiJ_G0025006	Rif1	96	80.030	ENSECAG00000012679	RIF1	99	80.030	Equus_caballus
MGP_PahariEiJ_G0025006	Rif1	67	46.988	ENSELUG00000006826	rif1	59	46.018	Esox_lucius
MGP_PahariEiJ_G0025006	Rif1	100	67.551	ENSFCAG00000029742	RIF1	99	67.754	Felis_catus
MGP_PahariEiJ_G0025006	Rif1	77	62.162	ENSFALG00000013874	RIF1	90	62.162	Ficedula_albicollis
MGP_PahariEiJ_G0025006	Rif1	100	68.263	ENSFDAG00000006538	RIF1	99	68.263	Fukomys_damarensis
MGP_PahariEiJ_G0025006	Rif1	62	47.844	ENSFHEG00000013721	rif1	64	47.339	Fundulus_heteroclitus
MGP_PahariEiJ_G0025006	Rif1	55	49.296	ENSGMOG00000003517	rif1	89	46.048	Gadus_morhua
MGP_PahariEiJ_G0025006	Rif1	82	57.398	ENSGALG00000012484	RIF1	94	57.398	Gallus_gallus
MGP_PahariEiJ_G0025006	Rif1	64	47.008	ENSGAFG00000017196	rif1	66	49.865	Gambusia_affinis
MGP_PahariEiJ_G0025006	Rif1	59	55.111	ENSGACG00000008579	rif1	66	54.386	Gasterosteus_aculeatus
MGP_PahariEiJ_G0025006	Rif1	90	67.674	ENSGAGG00000012595	RIF1	91	68.882	Gopherus_agassizii
MGP_PahariEiJ_G0025006	Rif1	89	80.372	ENSGGOG00000040178	RIF1	96	80.372	Gorilla_gorilla
MGP_PahariEiJ_G0025006	Rif1	74	51.087	ENSHBUG00000007125	rif1	67	48.919	Haplochromis_burtoni
MGP_PahariEiJ_G0025006	Rif1	94	66.724	ENSHGLG00100009807	RIF1	99	66.852	Heterocephalus_glaber_male
MGP_PahariEiJ_G0025006	Rif1	64	46.865	ENSHCOG00000015943	rif1	60	45.345	Hippocampus_comes
MGP_PahariEiJ_G0025006	Rif1	62	50.637	ENSIPUG00000021703	rif1	63	49.355	Ictalurus_punctatus
MGP_PahariEiJ_G0025006	Rif1	100	70.084	ENSSTOG00000020712	RIF1	99	70.125	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0025006	Rif1	99	67.619	ENSJJAG00000023000	Rif1	100	67.783	Jaculus_jaculus
MGP_PahariEiJ_G0025006	Rif1	68	46.328	ENSKMAG00000002852	rif1	70	46.280	Kryptolebias_marmoratus
MGP_PahariEiJ_G0025006	Rif1	63	48.589	ENSLBEG00000023196	rif1	57	47.673	Labrus_bergylta
MGP_PahariEiJ_G0025006	Rif1	65	62.865	ENSLACG00000005425	RIF1	63	62.865	Latimeria_chalumnae
MGP_PahariEiJ_G0025006	Rif1	63	51.262	ENSLOCG00000002657	rif1	82	48.589	Lepisosteus_oculatus
MGP_PahariEiJ_G0025006	Rif1	100	67.073	ENSLAFG00000009796	RIF1	100	66.992	Loxodonta_africana
MGP_PahariEiJ_G0025006	Rif1	100	68.442	ENSMFAG00000032233	RIF1	99	68.483	Macaca_fascicularis
MGP_PahariEiJ_G0025006	Rif1	100	68.442	ENSMMUG00000008611	RIF1	99	68.483	Macaca_mulatta
MGP_PahariEiJ_G0025006	Rif1	100	68.523	ENSMNEG00000031616	RIF1	99	68.563	Macaca_nemestrina
MGP_PahariEiJ_G0025006	Rif1	100	68.644	ENSMLEG00000042945	RIF1	99	68.684	Mandrillus_leucophaeus
MGP_PahariEiJ_G0025006	Rif1	72	47.207	ENSMAMG00000001745	rif1	83	47.207	Mastacembelus_armatus
MGP_PahariEiJ_G0025006	Rif1	71	46.037	ENSMZEG00005020920	rif1	68	48.421	Maylandia_zebra
MGP_PahariEiJ_G0025006	Rif1	87	54.436	ENSMGAG00000012732	RIF1	94	54.831	Meleagris_gallopavo
MGP_PahariEiJ_G0025006	Rif1	100	76.402	ENSMAUG00000013158	Rif1	100	76.444	Mesocricetus_auratus
MGP_PahariEiJ_G0025006	Rif1	100	69.283	ENSMICG00000046127	RIF1	99	69.283	Microcebus_murinus
MGP_PahariEiJ_G0025006	Rif1	100	77.499	ENSMOCG00000009381	Rif1	100	77.499	Microtus_ochrogaster
MGP_PahariEiJ_G0025006	Rif1	50	47.059	ENSMMOG00000006519	rif1	51	45.246	Mola_mola
MGP_PahariEiJ_G0025006	Rif1	100	55.457	ENSMODG00000003703	RIF1	99	55.457	Monodelphis_domestica
MGP_PahariEiJ_G0025006	Rif1	58	48.967	ENSMALG00000016759	rif1	66	48.338	Monopterus_albus
MGP_PahariEiJ_G0025006	Rif1	100	89.665	MGP_CAROLIEiJ_G0023555	Rif1	100	89.665	Mus_caroli
MGP_PahariEiJ_G0025006	Rif1	100	90.161	ENSMUSG00000036202	Rif1	100	90.161	Mus_musculus
MGP_PahariEiJ_G0025006	Rif1	100	90.215	MGP_SPRETEiJ_G0024476	Rif1	100	90.339	Mus_spretus
MGP_PahariEiJ_G0025006	Rif1	100	67.913	ENSMPUG00000000371	RIF1	99	67.780	Mustela_putorius_furo
MGP_PahariEiJ_G0025006	Rif1	89	66.515	ENSMLUG00000003376	RIF1	100	66.470	Myotis_lucifugus
MGP_PahariEiJ_G0025006	Rif1	100	72.252	ENSNGAG00000009268	Rif1	99	72.538	Nannospalax_galili
MGP_PahariEiJ_G0025006	Rif1	62	48.455	ENSNBRG00000014257	rif1	66	48.127	Neolamprologus_brichardi
MGP_PahariEiJ_G0025006	Rif1	100	66.506	ENSNLEG00000010955	RIF1	99	66.546	Nomascus_leucogenys
MGP_PahariEiJ_G0025006	Rif1	75	68.852	ENSMEUG00000007601	-	82	68.852	Notamacropus_eugenii
MGP_PahariEiJ_G0025006	Rif1	100	65.906	ENSODEG00000003950	RIF1	99	66.395	Octodon_degus
MGP_PahariEiJ_G0025006	Rif1	78	43.967	ENSONIG00000013657	rif1	68	47.710	Oreochromis_niloticus
MGP_PahariEiJ_G0025006	Rif1	72	69.209	ENSOANG00000006078	-	75	69.209	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0025006	Rif1	100	66.869	ENSOCUG00000017435	RIF1	99	66.774	Oryctolagus_cuniculus
MGP_PahariEiJ_G0025006	Rif1	63	45.462	ENSORLG00020001302	rif1	68	45.974	Oryzias_latipes_hni
MGP_PahariEiJ_G0025006	Rif1	63	45.894	ENSORLG00015000009	rif1	67	45.974	Oryzias_latipes_hsok
MGP_PahariEiJ_G0025006	Rif1	63	46.235	ENSOMEG00000021513	rif1	63	48.644	Oryzias_melastigma
MGP_PahariEiJ_G0025006	Rif1	100	67.513	ENSOGAG00000006141	RIF1	99	67.513	Otolemur_garnettii
MGP_PahariEiJ_G0025006	Rif1	100	68.145	ENSOARG00000008930	RIF1	99	68.011	Ovis_aries
MGP_PahariEiJ_G0025006	Rif1	100	67.984	ENSPPAG00000023754	RIF1	99	68.024	Pan_paniscus
MGP_PahariEiJ_G0025006	Rif1	100	67.363	ENSPPRG00000003618	RIF1	99	67.564	Panthera_pardus
MGP_PahariEiJ_G0025006	Rif1	100	67.404	ENSPTIG00000020652	RIF1	99	67.605	Panthera_tigris_altaica
MGP_PahariEiJ_G0025006	Rif1	100	68.105	ENSPTRG00000012534	RIF1	99	68.145	Pan_troglodytes
MGP_PahariEiJ_G0025006	Rif1	100	68.523	ENSPANG00000008525	RIF1	99	68.563	Papio_anubis
MGP_PahariEiJ_G0025006	Rif1	71	50.476	ENSPKIG00000004267	rif1	67	50.476	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0025006	Rif1	67	42.627	ENSPMGG00000016141	rif1	79	41.920	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0025006	Rif1	99	79.230	ENSPEMG00000000446	Rif1	99	79.106	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0025006	Rif1	88	73.591	ENSPCIG00000009185	RIF1	92	68.052	Phascolarctos_cinereus
MGP_PahariEiJ_G0025006	Rif1	64	47.877	ENSPFOG00000017804	rif1	53	47.327	Poecilia_formosa
MGP_PahariEiJ_G0025006	Rif1	57	47.736	ENSPFOG00000000554	-	50	46.920	Poecilia_formosa
MGP_PahariEiJ_G0025006	Rif1	64	48.377	ENSPLAG00000017945	rif1	71	47.664	Poecilia_latipinna
MGP_PahariEiJ_G0025006	Rif1	54	45.769	ENSPMEG00000006897	-	65	44.904	Poecilia_mexicana
MGP_PahariEiJ_G0025006	Rif1	63	47.520	ENSPREG00000018052	rif1	65	50.000	Poecilia_reticulata
MGP_PahariEiJ_G0025006	Rif1	100	68.253	ENSPPYG00000012846	RIF1	99	68.294	Pongo_abelii
MGP_PahariEiJ_G0025006	Rif1	84	78.431	ENSPCAG00000009032	RIF1	83	78.431	Procavia_capensis
MGP_PahariEiJ_G0025006	Rif1	100	69.618	ENSPCOG00000027888	RIF1	99	69.618	Propithecus_coquereli
MGP_PahariEiJ_G0025006	Rif1	92	74.848	ENSPVAG00000014276	RIF1	95	74.848	Pteropus_vampyrus
MGP_PahariEiJ_G0025006	Rif1	71	46.037	ENSPNYG00000012940	rif1	67	46.737	Pundamilia_nyererei
MGP_PahariEiJ_G0025006	Rif1	65	52.077	ENSPNAG00000016685	rif1	66	50.629	Pygocentrus_nattereri
MGP_PahariEiJ_G0025006	Rif1	100	84.280	ENSRNOG00000054901	Rif1	100	84.280	Rattus_norvegicus
MGP_PahariEiJ_G0025006	Rif1	100	67.527	ENSRBIG00000003704	RIF1	99	67.568	Rhinopithecus_bieti
MGP_PahariEiJ_G0025006	Rif1	100	68.374	ENSRROG00000028206	RIF1	99	68.415	Rhinopithecus_roxellana
MGP_PahariEiJ_G0025006	Rif1	97	83.871	ENSSBOG00000029530	RIF1	99	83.871	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0025006	Rif1	100	55.028	ENSSHAG00000018552	RIF1	100	53.930	Sarcophilus_harrisii
MGP_PahariEiJ_G0025006	Rif1	63	50.324	ENSSFOG00015021539	rif1	72	49.211	Scleropages_formosus
MGP_PahariEiJ_G0025006	Rif1	63	48.397	ENSSMAG00000011704	rif1	61	47.319	Scophthalmus_maximus
MGP_PahariEiJ_G0025006	Rif1	66	47.411	ENSSDUG00000015632	rif1	71	46.118	Seriola_dumerili
MGP_PahariEiJ_G0025006	Rif1	66	47.987	ENSSLDG00000019531	rif1	61	50.402	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0025006	Rif1	56	85.603	ENSSARG00000007161	-	56	85.603	Sorex_araneus
MGP_PahariEiJ_G0025006	Rif1	90	61.728	ENSSPUG00000003062	RIF1	99	61.728	Sphenodon_punctatus
MGP_PahariEiJ_G0025006	Rif1	58	50.206	ENSSPAG00000018359	rif1	79	50.206	Stegastes_partitus
MGP_PahariEiJ_G0025006	Rif1	100	68.470	ENSSSCG00000016395	RIF1	99	68.430	Sus_scrofa
MGP_PahariEiJ_G0025006	Rif1	66	46.656	ENSTRUG00000015808	rif1	71	46.580	Takifugu_rubripes
MGP_PahariEiJ_G0025006	Rif1	71	49.254	ENSTNIG00000011538	rif1	73	44.472	Tetraodon_nigroviridis
MGP_PahariEiJ_G0025006	Rif1	81	85.350	ENSTBEG00000016082	RIF1	81	85.350	Tupaia_belangeri
MGP_PahariEiJ_G0025006	Rif1	100	68.846	ENSTTRG00000011190	RIF1	99	68.886	Tursiops_truncatus
MGP_PahariEiJ_G0025006	Rif1	86	77.465	ENSUAMG00000026385	RIF1	97	77.465	Ursus_americanus
MGP_PahariEiJ_G0025006	Rif1	100	68.277	ENSUMAG00000000337	RIF1	99	68.277	Ursus_maritimus
MGP_PahariEiJ_G0025006	Rif1	100	66.317	ENSVPAG00000002162	RIF1	99	66.478	Vicugna_pacos
MGP_PahariEiJ_G0025006	Rif1	100	67.287	ENSVVUG00000011293	RIF1	99	67.287	Vulpes_vulpes
MGP_PahariEiJ_G0025006	Rif1	71	43.191	ENSXETG00000004530	rif1	53	49.493	Xenopus_tropicalis
MGP_PahariEiJ_G0025006	Rif1	63	45.272	ENSXMAG00000000506	rif1	64	44.524	Xiphophorus_maculatus