EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0025695 (Gene tree)
Gene ID: 110319140
Gene Symbol: Snrnp200
Alias: A330064G03Rik|Ascc3l1|HELIC2|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 31014 bases
Position: chr3:110384672-110415685
Accession: 110319140
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0065397	ResIII	PF04851.15	3e-25	1	2
MGP_PahariEiJ_P0065397	ResIII	PF04851.15	3e-25	2	2
MGP_PahariEiJ_P0065397	DEAD	PF00270.29	3.9e-52	1	2
MGP_PahariEiJ_P0065397	DEAD	PF00270.29	3.9e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0065398	-	621	-	-	- (aa)	-	-
MGP_PahariEiJ_T0065399	-	724	-	-	- (aa)	-	-
MGP_PahariEiJ_T0065400	-	746	-	-	- (aa)	-	-
MGP_PahariEiJ_T0065396	-	2569	-	-	- (aa)	-	-
MGP_PahariEiJ_T0065397	-	6745	XM_021194577	MGP_PahariEiJ_P0065397	2136 (aa)	XP_021050236	UPI000A30F8FA

Gene Model

Click here to download MGP_PahariEiJ_G0025695's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0025695's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0025695	Snrnp200	75	32.572	MGP_PahariEiJ_G0017268	Hfm1	59	32.692

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSG00000144028	SNRNP200	100	99.719	Homo_sapiens
MGP_PahariEiJ_G0025695	Snrnp200	99	90.841	ENSAPOG00000010223	snrnp200	99	90.730	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.672	ENSAMEG00000008996	SNRNP200	100	99.672	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0025695	Snrnp200	97	90.203	ENSACIG00000001764	snrnp200	98	90.203	Amphilophus_citrinellus
MGP_PahariEiJ_G0025695	Snrnp200	99	90.747	ENSAOCG00000024593	snrnp200	100	89.989	Amphiprion_ocellaris
MGP_PahariEiJ_G0025695	Snrnp200	97	90.043	ENSAPEG00000012554	snrnp200	100	90.043	Amphiprion_percula
MGP_PahariEiJ_G0025695	Snrnp200	99	90.606	ENSATEG00000022522	snrnp200	99	90.496	Anabas_testudineus
MGP_PahariEiJ_G0025695	Snrnp200	99	97.548	ENSAPLG00000004313	SNRNP200	100	97.548	Anas_platyrhynchos
MGP_PahariEiJ_G0025695	Snrnp200	99	97.322	ENSACAG00000000434	SNRNP200	100	97.322	Anolis_carolinensis
MGP_PahariEiJ_G0025695	Snrnp200	100	95.107	ENSANAG00000036625	SNRNP200	100	95.616	Aotus_nancymaae
MGP_PahariEiJ_G0025695	Snrnp200	99	90.465	ENSACLG00000011188	snrnp200	99	90.356	Astatotilapia_calliptera
MGP_PahariEiJ_G0025695	Snrnp200	99	90.559	ENSAMXG00000005684	snrnp200	99	90.449	Astyanax_mexicanus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.110	ENSBTAG00000000848	SNRNP200	100	99.110	Bos_taurus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.672	ENSCJAG00000007514	SNRNP200	100	99.672	Callithrix_jacchus
MGP_PahariEiJ_G0025695	Snrnp200	100	98.880	ENSCAFG00020019979	SNRNP200	100	99.825	Canis_lupus_dingo
MGP_PahariEiJ_G0025695	Snrnp200	100	99.298	ENSCHIG00000020611	SNRNP200	100	99.298	Capra_hircus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSTSYG00000010467	SNRNP200	100	99.719	Carlito_syrichta
MGP_PahariEiJ_G0025695	Snrnp200	99	99.342	ENSCAPG00000017234	SNRNP200	99	99.342	Cavia_aperea
MGP_PahariEiJ_G0025695	Snrnp200	100	99.625	ENSCPOG00000006776	SNRNP200	100	99.625	Cavia_porcellus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.672	ENSCCAG00000033962	SNRNP200	100	99.672	Cebus_capucinus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSCATG00000015790	SNRNP200	100	99.719	Cercocebus_atys
MGP_PahariEiJ_G0025695	Snrnp200	100	99.485	ENSCLAG00000004116	SNRNP200	100	99.485	Chinchilla_lanigera
MGP_PahariEiJ_G0025695	Snrnp200	100	99.672	ENSCSAG00000017369	SNRNP200	100	99.672	Chlorocebus_sabaeus
MGP_PahariEiJ_G0025695	Snrnp200	75	98.802	ENSCHOG00000012981	-	59	98.802	Choloepus_hoffmanni
MGP_PahariEiJ_G0025695	Snrnp200	100	97.569	ENSCPBG00000022571	SNRNP200	100	97.569	Chrysemys_picta_bellii
MGP_PahariEiJ_G0025695	Snrnp200	99	76.553	ENSCING00000005082	-	99	76.693	Ciona_intestinalis
MGP_PahariEiJ_G0025695	Snrnp200	100	94.255	ENSCANG00000033932	SNRNP200	100	99.701	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.860	ENSCGRG00001022610	Snrnp200	100	99.860	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0025695	Snrnp200	100	99.299	ENSCGRG00000016472	Snrnp200	100	99.299	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0025695	Snrnp200	100	89.841	ENSCSEG00000016399	snrnp200	100	89.841	Cynoglossus_semilaevis
MGP_PahariEiJ_G0025695	Snrnp200	100	85.581	ENSCVAG00000017631	snrnp200	99	85.581	Cyprinodon_variegatus
MGP_PahariEiJ_G0025695	Snrnp200	100	90.309	ENSDARG00000077536	snrnp200	99	90.309	Danio_rerio
MGP_PahariEiJ_G0025695	Snrnp200	100	98.081	ENSDNOG00000011227	SNRNP200	100	98.081	Dasypus_novemcinctus
MGP_PahariEiJ_G0025695	Snrnp200	100	97.101	ENSDORG00000005861	Snrnp200	100	97.101	Dipodomys_ordii
MGP_PahariEiJ_G0025695	Snrnp200	100	74.209	FBgn0263599	l(3)72Ab	99	74.115	Drosophila_melanogaster
MGP_PahariEiJ_G0025695	Snrnp200	95	99.397	ENSETEG00000000162	SNRNP200	74	99.397	Echinops_telfairi
MGP_PahariEiJ_G0025695	Snrnp200	83	81.256	ENSEBUG00000016524	snrnp200	95	81.256	Eptatretus_burgeri
MGP_PahariEiJ_G0025695	Snrnp200	100	98.648	ENSEASG00005001884	SNRNP200	100	98.648	Equus_asinus_asinus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.766	ENSECAG00000019675	SNRNP200	100	99.766	Equus_caballus
MGP_PahariEiJ_G0025695	Snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
MGP_PahariEiJ_G0025695	Snrnp200	99	90.888	ENSELUG00000018948	snrnp200	99	90.777	Esox_lucius
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSFCAG00000010699	SNRNP200	100	99.719	Felis_catus
MGP_PahariEiJ_G0025695	Snrnp200	95	89.889	ENSFALG00000001368	-	95	91.964	Ficedula_albicollis
MGP_PahariEiJ_G0025695	Snrnp200	100	99.438	ENSFDAG00000004683	SNRNP200	100	99.438	Fukomys_damarensis
MGP_PahariEiJ_G0025695	Snrnp200	100	87.734	ENSFHEG00000003786	snrnp200	99	87.734	Fundulus_heteroclitus
MGP_PahariEiJ_G0025695	Snrnp200	100	89.720	ENSGMOG00000004881	snrnp200	99	89.673	Gadus_morhua
MGP_PahariEiJ_G0025695	Snrnp200	100	87.968	ENSGAFG00000010807	snrnp200	99	87.968	Gambusia_affinis
MGP_PahariEiJ_G0025695	Snrnp200	100	89.958	ENSGACG00000011474	snrnp200	99	89.865	Gasterosteus_aculeatus
MGP_PahariEiJ_G0025695	Snrnp200	95	97.584	ENSGAGG00000016069	SNRNP200	99	97.584	Gopherus_agassizii
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSGGOG00000005174	SNRNP200	100	99.719	Gorilla_gorilla
MGP_PahariEiJ_G0025695	Snrnp200	97	87.727	ENSHBUG00000011322	snrnp200	99	87.774	Haplochromis_burtoni
MGP_PahariEiJ_G0025695	Snrnp200	100	99.532	ENSHGLG00000006654	SNRNP200	100	99.532	Heterocephalus_glaber_female
MGP_PahariEiJ_G0025695	Snrnp200	100	99.532	ENSHGLG00100018594	SNRNP200	100	99.532	Heterocephalus_glaber_male
MGP_PahariEiJ_G0025695	Snrnp200	100	99.672	ENSSTOG00000016351	SNRNP200	100	99.672	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.625	ENSJJAG00000023659	Snrnp200	100	99.625	Jaculus_jaculus
MGP_PahariEiJ_G0025695	Snrnp200	100	87.494	ENSKMAG00000003665	snrnp200	99	87.494	Kryptolebias_marmoratus
MGP_PahariEiJ_G0025695	Snrnp200	100	90.215	ENSLBEG00000021585	snrnp200	99	90.215	Labrus_bergylta
MGP_PahariEiJ_G0025695	Snrnp200	82	94.722	ENSLACG00000000226	SNRNP200	99	94.722	Latimeria_chalumnae
MGP_PahariEiJ_G0025695	Snrnp200	100	92.041	ENSLOCG00000015198	snrnp200	99	92.041	Lepisosteus_oculatus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.391	ENSLAFG00000015626	SNRNP200	100	99.391	Loxodonta_africana
MGP_PahariEiJ_G0025695	Snrnp200	100	99.672	ENSMFAG00000040174	SNRNP200	100	99.672	Macaca_fascicularis
MGP_PahariEiJ_G0025695	Snrnp200	100	99.672	ENSMMUG00000023261	SNRNP200	100	99.672	Macaca_mulatta
MGP_PahariEiJ_G0025695	Snrnp200	100	99.625	ENSMNEG00000032398	SNRNP200	100	99.625	Macaca_nemestrina
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSMLEG00000019083	SNRNP200	100	99.719	Mandrillus_leucophaeus
MGP_PahariEiJ_G0025695	Snrnp200	100	90.173	ENSMAMG00000007851	snrnp200	99	90.126	Mastacembelus_armatus
MGP_PahariEiJ_G0025695	Snrnp200	97	87.727	ENSMZEG00005010787	snrnp200	99	87.774	Maylandia_zebra
MGP_PahariEiJ_G0025695	Snrnp200	97	97.097	ENSMGAG00000001831	SNRNP200	100	97.097	Meleagris_gallopavo
MGP_PahariEiJ_G0025695	Snrnp200	100	99.906	ENSMAUG00000011825	Snrnp200	100	99.906	Mesocricetus_auratus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.672	ENSMICG00000004710	SNRNP200	100	99.672	Microcebus_murinus
MGP_PahariEiJ_G0025695	Snrnp200	100	97.331	ENSMOCG00000011814	Snrnp200	100	97.331	Microtus_ochrogaster
MGP_PahariEiJ_G0025695	Snrnp200	99	88.962	ENSMMOG00000014167	snrnp200	99	88.858	Mola_mola
MGP_PahariEiJ_G0025695	Snrnp200	100	98.783	ENSMODG00000008475	SNRNP200	100	98.783	Monodelphis_domestica
MGP_PahariEiJ_G0025695	Snrnp200	99	90.747	ENSMALG00000001973	snrnp200	99	90.637	Monopterus_albus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.906	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.906	Mus_caroli
MGP_PahariEiJ_G0025695	Snrnp200	100	99.953	ENSMUSG00000003660	Snrnp200	100	99.953	Mus_musculus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.953	MGP_SPRETEiJ_G0025170	Snrnp200	100	100.000	Mus_spretus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.625	ENSMPUG00000008949	SNRNP200	100	99.625	Mustela_putorius_furo
MGP_PahariEiJ_G0025695	Snrnp200	100	98.971	ENSMLUG00000010493	SNRNP200	100	98.971	Myotis_lucifugus
MGP_PahariEiJ_G0025695	Snrnp200	100	95.272	ENSMLUG00000027511	-	100	95.272	Myotis_lucifugus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.813	ENSNGAG00000021993	Snrnp200	100	99.813	Nannospalax_galili
MGP_PahariEiJ_G0025695	Snrnp200	90	90.261	ENSNBRG00000017960	snrnp200	98	90.261	Neolamprologus_brichardi
MGP_PahariEiJ_G0025695	Snrnp200	100	95.072	ENSNLEG00000000025	SNRNP200	100	95.072	Nomascus_leucogenys
MGP_PahariEiJ_G0025695	Snrnp200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
MGP_PahariEiJ_G0025695	Snrnp200	100	95.787	ENSOPRG00000015464	SNRNP200	100	95.787	Ochotona_princeps
MGP_PahariEiJ_G0025695	Snrnp200	100	99.485	ENSODEG00000008366	SNRNP200	100	99.485	Octodon_degus
MGP_PahariEiJ_G0025695	Snrnp200	99	90.465	ENSONIG00000010714	snrnp200	99	90.356	Oreochromis_niloticus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.579	ENSOCUG00000009864	SNRNP200	100	99.579	Oryctolagus_cuniculus
MGP_PahariEiJ_G0025695	Snrnp200	100	90.262	ENSORLG00000012286	snrnp200	100	90.262	Oryzias_latipes
MGP_PahariEiJ_G0025695	Snrnp200	100	90.309	ENSORLG00020004648	snrnp200	100	90.309	Oryzias_latipes_hni
MGP_PahariEiJ_G0025695	Snrnp200	100	90.262	ENSORLG00015019114	snrnp200	100	90.288	Oryzias_latipes_hsok
MGP_PahariEiJ_G0025695	Snrnp200	99	90.512	ENSOMEG00000011834	snrnp200	99	90.403	Oryzias_melastigma
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSOGAG00000006879	SNRNP200	100	99.719	Otolemur_garnettii
MGP_PahariEiJ_G0025695	Snrnp200	100	98.269	ENSOARG00000013949	SNRNP200	100	98.269	Ovis_aries
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSPPAG00000041559	SNRNP200	100	99.719	Pan_paniscus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSPPRG00000004435	SNRNP200	100	99.719	Panthera_pardus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.251	ENSPTIG00000006380	SNRNP200	100	99.251	Panthera_tigris_altaica
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSPTRG00000012230	SNRNP200	100	99.719	Pan_troglodytes
MGP_PahariEiJ_G0025695	Snrnp200	100	99.672	ENSPANG00000006017	SNRNP200	100	99.672	Papio_anubis
MGP_PahariEiJ_G0025695	Snrnp200	100	91.058	ENSPKIG00000014762	snrnp200	99	91.058	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0025695	Snrnp200	100	96.537	ENSPSIG00000008580	SNRNP200	100	96.537	Pelodiscus_sinensis
MGP_PahariEiJ_G0025695	Snrnp200	100	98.783	ENSPCIG00000023050	SNRNP200	100	98.783	Phascolarctos_cinereus
MGP_PahariEiJ_G0025695	Snrnp200	100	90.314	ENSPFOG00000015110	snrnp200	99	90.314	Poecilia_formosa
MGP_PahariEiJ_G0025695	Snrnp200	97	90.165	ENSPLAG00000006711	snrnp200	99	90.165	Poecilia_latipinna
MGP_PahariEiJ_G0025695	Snrnp200	97	90.110	ENSPMEG00000021166	snrnp200	99	90.110	Poecilia_mexicana
MGP_PahariEiJ_G0025695	Snrnp200	100	90.403	ENSPREG00000008875	snrnp200	99	90.403	Poecilia_reticulata
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSPPYG00000012068	SNRNP200	100	99.719	Pongo_abelii
MGP_PahariEiJ_G0025695	Snrnp200	97	98.718	ENSPCAG00000008536	SNRNP200	89	98.718	Procavia_capensis
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSPCOG00000024608	SNRNP200	100	99.719	Propithecus_coquereli
MGP_PahariEiJ_G0025695	Snrnp200	96	99.320	ENSPVAG00000005860	SNRNP200	93	99.320	Pteropus_vampyrus
MGP_PahariEiJ_G0025695	Snrnp200	99	85.948	ENSPNYG00000017476	snrnp200	99	85.854	Pundamilia_nyererei
MGP_PahariEiJ_G0025695	Snrnp200	100	86.049	ENSPNAG00000010998	snrnp200	99	86.049	Pygocentrus_nattereri
MGP_PahariEiJ_G0025695	Snrnp200	100	99.906	ENSRNOG00000012157	Snrnp200	100	99.906	Rattus_norvegicus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSRBIG00000044690	-	100	99.719	Rhinopithecus_bieti
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSRROG00000037952	-	100	99.719	Rhinopithecus_roxellana
MGP_PahariEiJ_G0025695	Snrnp200	100	99.672	ENSSBOG00000035471	SNRNP200	100	99.672	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0025695	Snrnp200	97	98.694	ENSSHAG00000000758	SNRNP200	100	98.694	Sarcophilus_harrisii
MGP_PahariEiJ_G0025695	Snrnp200	99	91.639	ENSSFOG00015018826	snrnp200	99	91.526	Scleropages_formosus
MGP_PahariEiJ_G0025695	Snrnp200	99	90.418	ENSSMAG00000005463	snrnp200	99	90.309	Scophthalmus_maximus
MGP_PahariEiJ_G0025695	Snrnp200	99	90.700	ENSSDUG00000021410	snrnp200	99	90.590	Seriola_dumerili
MGP_PahariEiJ_G0025695	Snrnp200	99	90.653	ENSSLDG00000010884	snrnp200	99	90.543	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0025695	Snrnp200	95	98.391	ENSSARG00000010728	SNRNP200	96	98.391	Sorex_araneus
MGP_PahariEiJ_G0025695	Snrnp200	100	97.331	ENSSPUG00000003726	-	100	97.331	Sphenodon_punctatus
MGP_PahariEiJ_G0025695	Snrnp200	99	90.747	ENSSPAG00000001842	snrnp200	99	90.637	Stegastes_partitus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.532	ENSSSCG00000008127	SNRNP200	100	99.532	Sus_scrofa
MGP_PahariEiJ_G0025695	Snrnp200	99	87.791	ENSTGUG00000014475	-	100	87.791	Taeniopygia_guttata
MGP_PahariEiJ_G0025695	Snrnp200	99	90.371	ENSTRUG00000001307	snrnp200	99	90.262	Takifugu_rubripes
MGP_PahariEiJ_G0025695	Snrnp200	100	85.791	ENSTNIG00000004320	snrnp200	100	85.791	Tetraodon_nigroviridis
MGP_PahariEiJ_G0025695	Snrnp200	82	99.495	ENSTBEG00000003329	-	67	99.495	Tupaia_belangeri
MGP_PahariEiJ_G0025695	Snrnp200	100	99.345	ENSTTRG00000004983	SNRNP200	100	99.345	Tursiops_truncatus
MGP_PahariEiJ_G0025695	Snrnp200	75	92.733	ENSUAMG00000008395	-	95	92.733	Ursus_americanus
MGP_PahariEiJ_G0025695	Snrnp200	100	99.719	ENSUMAG00000012385	SNRNP200	100	99.719	Ursus_maritimus
MGP_PahariEiJ_G0025695	Snrnp200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
MGP_PahariEiJ_G0025695	Snrnp200	100	99.486	ENSVVUG00000026247	SNRNP200	100	99.486	Vulpes_vulpes
MGP_PahariEiJ_G0025695	Snrnp200	100	94.296	ENSXETG00000001243	snrnp200	100	94.296	Xenopus_tropicalis
MGP_PahariEiJ_G0025695	Snrnp200	97	90.418	ENSXMAG00000002058	snrnp200	98	90.418	Xiphophorus_maculatus