EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0026048 (Gene tree)
Gene ID: 110318690
Gene Symbol: Chd6
Alias: 5430439G14Rik|6330406J24Rik
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 159952 bases
Position: chr3:143305481-143465432
Accession: 110318690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0066895	ResIII	PF04851.15	3.8e-08	1	1
MGP_PahariEiJ_P0066891	ResIII	PF04851.15	2.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0066892	-	721	-	-	- (aa)	-	-
MGP_PahariEiJ_T0066893	-	764	-	-	- (aa)	-	-
MGP_PahariEiJ_T0066891	-	10523	XM_021193897	MGP_PahariEiJ_P0066891	2711 (aa)	XP_021049556	UPI000A309012
MGP_PahariEiJ_T0066896	-	611	-	-	- (aa)	-	-
MGP_PahariEiJ_T0066897	-	3093	-	-	- (aa)	-	-
MGP_PahariEiJ_T0066894	-	3992	-	-	- (aa)	-	-
MGP_PahariEiJ_T0066895	-	3608	-	MGP_PahariEiJ_P0066895	1183 (aa)	-	-
MGP_PahariEiJ_T0066898	-	616	-	-	- (aa)	-	-
MGP_PahariEiJ_T0066899	-	654	-	-	- (aa)	-	-
MGP_PahariEiJ_T0066901	-	4921	-	-	- (aa)	-	-
MGP_PahariEiJ_T0066900	-	675	-	MGP_PahariEiJ_P0066900	217 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0026048's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0026048's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0026048	Chd6	66	36.621	MGP_PahariEiJ_G0029205	Chd5	51	34.359
MGP_PahariEiJ_G0026048	Chd6	61	37.625	MGP_PahariEiJ_G0013082	Chd2	62	32.328
MGP_PahariEiJ_G0026048	Chd6	93	65.799	MGP_PahariEiJ_G0022964	Chd9	76	60.945
MGP_PahariEiJ_G0026048	Chd6	88	68.904	MGP_PahariEiJ_G0030258	Chd8	68	63.751
MGP_PahariEiJ_G0026048	Chd6	84	73.239	MGP_PahariEiJ_G0023920	Chd7	72	65.229
MGP_PahariEiJ_G0026048	Chd6	69	36.395	MGP_PahariEiJ_G0023414	Chd1	88	34.565

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0026048	Chd6	100	95.021	ENSG00000124177	CHD6	99	96.939	Homo_sapiens
MGP_PahariEiJ_G0026048	Chd6	85	83.613	ENSAPOG00000013736	chd6	64	75.550	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0026048	Chd6	100	94.684	ENSAMEG00000009496	CHD6	100	87.312	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0026048	Chd6	85	83.185	ENSATEG00000005608	chd6	68	71.930	Anabas_testudineus
MGP_PahariEiJ_G0026048	Chd6	99	85.532	ENSAPLG00000015592	CHD6	99	71.497	Anas_platyrhynchos
MGP_PahariEiJ_G0026048	Chd6	99	78.595	ENSACAG00000006842	CHD6	99	66.546	Anolis_carolinensis
MGP_PahariEiJ_G0026048	Chd6	100	94.937	ENSANAG00000037548	CHD6	99	91.193	Aotus_nancymaae
MGP_PahariEiJ_G0026048	Chd6	86	78.803	ENSAMXG00000009576	chd6	77	69.109	Astyanax_mexicanus
MGP_PahariEiJ_G0026048	Chd6	100	93.165	ENSBTAG00000005733	CHD6	100	84.644	Bos_taurus
MGP_PahariEiJ_G0026048	Chd6	100	94.852	ENSCJAG00000017920	CHD6	99	91.009	Callithrix_jacchus
MGP_PahariEiJ_G0026048	Chd6	100	94.599	ENSCAFG00000009236	CHD6	100	87.160	Canis_familiaris
MGP_PahariEiJ_G0026048	Chd6	99	94.634	ENSCAFG00020012906	CHD6	99	94.002	Canis_lupus_dingo
MGP_PahariEiJ_G0026048	Chd6	100	93.080	ENSCHIG00000017606	CHD6	100	84.533	Capra_hircus
MGP_PahariEiJ_G0026048	Chd6	84	87.555	ENSTSYG00000014635	CHD6	100	87.599	Carlito_syrichta
MGP_PahariEiJ_G0026048	Chd6	100	94.684	ENSCPOG00000015641	CHD6	100	88.599	Cavia_porcellus
MGP_PahariEiJ_G0026048	Chd6	100	95.021	ENSCCAG00000036828	CHD6	99	91.193	Cebus_capucinus
MGP_PahariEiJ_G0026048	Chd6	100	94.852	ENSCATG00000039248	CHD6	99	91.193	Cercocebus_atys
MGP_PahariEiJ_G0026048	Chd6	100	94.599	ENSCLAG00000013743	CHD6	100	88.220	Chinchilla_lanigera
MGP_PahariEiJ_G0026048	Chd6	100	95.105	ENSCSAG00000013997	CHD6	100	87.982	Chlorocebus_sabaeus
MGP_PahariEiJ_G0026048	Chd6	100	86.245	ENSCHOG00000012647	CHD6	95	87.409	Choloepus_hoffmanni
MGP_PahariEiJ_G0026048	Chd6	100	86.314	ENSCPBG00000019382	CHD6	99	72.574	Chrysemys_picta_bellii
MGP_PahariEiJ_G0026048	Chd6	100	95.105	ENSCANG00000043435	CHD6	99	91.193	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0026048	Chd6	100	97.635	ENSCGRG00001002694	Chd6	100	93.847	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0026048	Chd6	74	96.822	ENSCGRG00000006749	-	99	97.049	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0026048	Chd6	99	77.174	ENSDARG00000017244	chd6	79	72.918	Danio_rerio
MGP_PahariEiJ_G0026048	Chd6	99	94.298	ENSDNOG00000004176	CHD6	99	86.020	Dasypus_novemcinctus
MGP_PahariEiJ_G0026048	Chd6	99	94.786	ENSEASG00005023433	CHD6	95	95.367	Equus_asinus_asinus
MGP_PahariEiJ_G0026048	Chd6	99	94.759	ENSECAG00000011761	CHD6	100	87.523	Equus_caballus
MGP_PahariEiJ_G0026048	Chd6	73	87.326	ENSELUG00000012309	chd6	89	79.434	Esox_lucius
MGP_PahariEiJ_G0026048	Chd6	100	94.852	ENSFCAG00000003572	CHD6	100	87.201	Felis_catus
MGP_PahariEiJ_G0026048	Chd6	100	84.673	ENSFALG00000012563	CHD6	99	70.014	Ficedula_albicollis
MGP_PahariEiJ_G0026048	Chd6	99	94.813	ENSFDAG00000013791	CHD6	99	88.635	Fukomys_damarensis
MGP_PahariEiJ_G0026048	Chd6	85	74.876	ENSGMOG00000011715	chd6	85	69.192	Gadus_morhua
MGP_PahariEiJ_G0026048	Chd6	89	76.504	ENSGACG00000000037	chd6	86	69.094	Gasterosteus_aculeatus
MGP_PahariEiJ_G0026048	Chd6	100	95.021	ENSGGOG00000013123	CHD6	99	91.193	Gorilla_gorilla
MGP_PahariEiJ_G0026048	Chd6	92	78.221	ENSHBUG00000014701	chd6	63	75.862	Haplochromis_burtoni
MGP_PahariEiJ_G0026048	Chd6	100	94.768	ENSHGLG00000004548	CHD6	100	88.750	Heterocephalus_glaber_female
MGP_PahariEiJ_G0026048	Chd6	100	94.768	ENSHGLG00100006401	CHD6	100	88.750	Heterocephalus_glaber_male
MGP_PahariEiJ_G0026048	Chd6	85	83.449	ENSIPUG00000003692	chd6	77	76.812	Ictalurus_punctatus
MGP_PahariEiJ_G0026048	Chd6	100	94.684	ENSSTOG00000013382	CHD6	100	89.150	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0026048	Chd6	99	80.824	ENSLACG00000010881	CHD6	89	72.653	Latimeria_chalumnae
MGP_PahariEiJ_G0026048	Chd6	83	86.850	ENSLOCG00000007386	chd6	89	74.985	Lepisosteus_oculatus
MGP_PahariEiJ_G0026048	Chd6	100	94.515	ENSLAFG00000012144	CHD6	100	86.870	Loxodonta_africana
MGP_PahariEiJ_G0026048	Chd6	100	95.105	ENSMFAG00000032830	CHD6	99	91.193	Macaca_fascicularis
MGP_PahariEiJ_G0026048	Chd6	100	95.105	ENSMMUG00000020458	CHD6	99	91.193	Macaca_mulatta
MGP_PahariEiJ_G0026048	Chd6	100	95.105	ENSMNEG00000040847	CHD6	99	91.193	Macaca_nemestrina
MGP_PahariEiJ_G0026048	Chd6	99	95.060	ENSMLEG00000031965	CHD6	99	91.193	Mandrillus_leucophaeus
MGP_PahariEiJ_G0026048	Chd6	89	79.569	ENSMAMG00000013111	chd6	69	70.772	Mastacembelus_armatus
MGP_PahariEiJ_G0026048	Chd6	99	85.362	ENSMGAG00000001121	CHD6	99	71.109	Meleagris_gallopavo
MGP_PahariEiJ_G0026048	Chd6	99	95.230	ENSMICG00000016641	CHD6	99	91.743	Microcebus_murinus
MGP_PahariEiJ_G0026048	Chd6	74	96.595	ENSMOCG00000014004	-	97	96.822	Microtus_ochrogaster
MGP_PahariEiJ_G0026048	Chd6	75	96.032	ENSMODG00000000720	-	99	78.232	Monodelphis_domestica
MGP_PahariEiJ_G0026048	Chd6	100	99.577	MGP_CAROLIEiJ_G0024604	Chd6	100	99.577	Mus_caroli
MGP_PahariEiJ_G0026048	Chd6	100	99.493	ENSMUSG00000057133	Chd6	100	99.493	Mus_musculus
MGP_PahariEiJ_G0026048	Chd6	100	99.577	MGP_SPRETEiJ_G0025526	Chd6	100	99.577	Mus_spretus
MGP_PahariEiJ_G0026048	Chd6	100	94.768	ENSMPUG00000017695	CHD6	100	85.987	Mustela_putorius_furo
MGP_PahariEiJ_G0026048	Chd6	100	94.093	ENSMLUG00000016247	CHD6	100	86.502	Myotis_lucifugus
MGP_PahariEiJ_G0026048	Chd6	91	77.585	ENSNBRG00000013839	chd6	80	72.074	Neolamprologus_brichardi
MGP_PahariEiJ_G0026048	Chd6	100	92.586	ENSNLEG00000006496	CHD6	99	87.001	Nomascus_leucogenys
MGP_PahariEiJ_G0026048	Chd6	100	90.970	ENSOPRG00000013376	-	100	83.854	Ochotona_princeps
MGP_PahariEiJ_G0026048	Chd6	91	80.092	ENSONIG00000000393	chd6	84	74.114	Oreochromis_niloticus
MGP_PahariEiJ_G0026048	Chd6	99	86.611	ENSOANG00000014347	CHD6	99	68.843	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0026048	Chd6	99	94.759	ENSOCUG00000012394	CHD6	100	85.830	Oryctolagus_cuniculus
MGP_PahariEiJ_G0026048	Chd6	85	82.806	ENSORLG00020021891	chd6	95	85.571	Oryzias_latipes_hni
MGP_PahariEiJ_G0026048	Chd6	99	94.521	ENSOGAG00000002427	CHD6	100	86.608	Otolemur_garnettii
MGP_PahariEiJ_G0026048	Chd6	99	92.561	ENSOARG00000002597	CHD6	100	82.426	Ovis_aries
MGP_PahariEiJ_G0026048	Chd6	100	94.852	ENSPPRG00000014756	CHD6	100	87.275	Panthera_pardus
MGP_PahariEiJ_G0026048	Chd6	100	94.852	ENSPTIG00000011094	CHD6	100	87.164	Panthera_tigris_altaica
MGP_PahariEiJ_G0026048	Chd6	100	95.021	ENSPTRG00000013504	CHD6	99	91.193	Pan_troglodytes
MGP_PahariEiJ_G0026048	Chd6	100	95.190	ENSPANG00000025554	CHD6	99	91.376	Papio_anubis
MGP_PahariEiJ_G0026048	Chd6	89	80.474	ENSPKIG00000005578	chd6	80	72.380	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0026048	Chd6	80	84.486	ENSPMGG00000014877	chd6	84	74.380	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0026048	Chd6	74	96.575	ENSPEMG00000014672	-	99	92.844	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0026048	Chd6	100	89.048	ENSPCIG00000028037	CHD6	100	77.619	Phascolarctos_cinereus
MGP_PahariEiJ_G0026048	Chd6	92	78.383	ENSPLAG00000003128	chd6	72	68.816	Poecilia_latipinna
MGP_PahariEiJ_G0026048	Chd6	86	82.647	ENSPREG00000022653	chd6	99	85.531	Poecilia_reticulata
MGP_PahariEiJ_G0026048	Chd6	100	94.937	ENSPPYG00000011016	CHD6	100	87.987	Pongo_abelii
MGP_PahariEiJ_G0026048	Chd6	100	95.190	ENSPCOG00000001089	CHD6	99	91.193	Propithecus_coquereli
MGP_PahariEiJ_G0026048	Chd6	91	79.633	ENSPNYG00000022516	chd6	80	73.270	Pundamilia_nyererei
MGP_PahariEiJ_G0026048	Chd6	84	81.836	ENSPNAG00000012825	chd6	79	70.252	Pygocentrus_nattereri
MGP_PahariEiJ_G0026048	Chd6	100	98.564	ENSRNOG00000016744	Chd6	100	95.721	Rattus_norvegicus
MGP_PahariEiJ_G0026048	Chd6	100	94.937	ENSSBOG00000022089	CHD6	99	91.193	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0026048	Chd6	100	88.786	ENSSHAG00000017072	CHD6	100	77.293	Sarcophilus_harrisii
MGP_PahariEiJ_G0026048	Chd6	91	81.767	ENSSFOG00015012920	chd6	81	71.973	Scleropages_formosus
MGP_PahariEiJ_G0026048	Chd6	72	98.684	ENSSARG00000002615	-	61	98.684	Sorex_araneus
MGP_PahariEiJ_G0026048	Chd6	100	93.840	ENSSSCG00000007360	CHD6	100	87.441	Sus_scrofa
MGP_PahariEiJ_G0026048	Chd6	93	89.050	ENSTGUG00000003179	CHD6	100	72.401	Taeniopygia_guttata
MGP_PahariEiJ_G0026048	Chd6	80	84.979	ENSTNIG00000017487	chd6	100	56.706	Tetraodon_nigroviridis
MGP_PahariEiJ_G0026048	Chd6	100	93.249	ENSTTRG00000013438	CHD6	100	83.505	Tursiops_truncatus
MGP_PahariEiJ_G0026048	Chd6	99	94.719	ENSUAMG00000024036	CHD6	95	93.822	Ursus_americanus
MGP_PahariEiJ_G0026048	Chd6	99	94.714	ENSUMAG00000002017	CHD6	95	93.822	Ursus_maritimus
MGP_PahariEiJ_G0026048	Chd6	95	89.698	ENSVPAG00000007941	CHD6	95	87.269	Vicugna_pacos
MGP_PahariEiJ_G0026048	Chd6	100	94.599	ENSVVUG00000029164	CHD6	100	87.017	Vulpes_vulpes
MGP_PahariEiJ_G0026048	Chd6	100	71.993	ENSXETG00000021445	chd6	100	60.692	Xenopus_tropicalis