EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0026186 (Gene tree)
Gene ID: 110318532
Gene Symbol: Rbm38
Alias: Rnpc1|Seb4l
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 14351 bases
Position: chr3:155315457-155329807
Accession: 110318532
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0067451	RRM_1	PF00076.22	1e-17	1	1
MGP_PahariEiJ_P0067453	RRM_1	PF00076.22	1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0067451	-	2074	-	MGP_PahariEiJ_P0067451	237 (aa)	XP_021049326	UPI000A311144
MGP_PahariEiJ_T0067453	-	1770	-	MGP_PahariEiJ_P0067453	237 (aa)	XP_021049326	UPI000A311144
MGP_PahariEiJ_T0067452	-	936	-	MGP_PahariEiJ_P0067452	78 (aa)	-	-
MGP_PahariEiJ_T0067455	-	621	-	MGP_PahariEiJ_P0067455	107 (aa)	-	-
MGP_PahariEiJ_T0067454	-	2289	-	-	- (aa)	-	-
MGP_PahariEiJ_T0067457	-	754	-	MGP_PahariEiJ_P0067457	29 (aa)	-	UPI00021CF755
MGP_PahariEiJ_T0067456	-	441	-	MGP_PahariEiJ_P0067456	125 (aa)	-	-
MGP_PahariEiJ_T0067458	-	1533	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0026186's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0026186's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0026186	Rbm38	51	44.681	MGP_PahariEiJ_G0017224	Hnrnpd	51	36.364
MGP_PahariEiJ_G0026186	Rbm38	79	40.323	MGP_PahariEiJ_G0018079	Msi2	66	41.333
MGP_PahariEiJ_G0026186	Rbm38	87	38.158	MGP_PahariEiJ_G0024206	Msi1	66	50.000
MGP_PahariEiJ_G0026186	Rbm38	82	42.105	MGP_PahariEiJ_G0030987	Dazap1	86	35.802
MGP_PahariEiJ_G0026186	Rbm38	74	38.043	MGP_PahariEiJ_G0030981	Cirbp	78	40.476
MGP_PahariEiJ_G0026186	Rbm38	63	91.837	MGP_PahariEiJ_G0019548	Rbm24	100	67.227

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0026186	Rbm38	100	93.724	ENSG00000132819	RBM38	100	95.041	Homo_sapiens
MGP_PahariEiJ_G0026186	Rbm38	94	64.758	ENSAPOG00000009939	-	97	62.115	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0026186	Rbm38	89	58.621	ENSAPOG00000003301	rbm38	91	58.621	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0026186	Rbm38	89	56.652	ENSACIG00000000010	rbm38	91	56.652	Amphilophus_citrinellus
MGP_PahariEiJ_G0026186	Rbm38	94	66.087	ENSACIG00000012502	-	100	87.179	Amphilophus_citrinellus
MGP_PahariEiJ_G0026186	Rbm38	95	63.636	ENSAOCG00000012559	RBM38	93	61.472	Amphiprion_ocellaris
MGP_PahariEiJ_G0026186	Rbm38	89	58.621	ENSAOCG00000013497	-	91	58.621	Amphiprion_ocellaris
MGP_PahariEiJ_G0026186	Rbm38	94	62.295	ENSAPEG00000023581	-	97	60.082	Amphiprion_percula
MGP_PahariEiJ_G0026186	Rbm38	89	62.791	ENSAPEG00000013137	rbm38	88	62.791	Amphiprion_percula
MGP_PahariEiJ_G0026186	Rbm38	91	60.714	ENSATEG00000016366	rbm38	94	60.714	Anabas_testudineus
MGP_PahariEiJ_G0026186	Rbm38	94	62.140	ENSATEG00000016710	-	92	62.338	Anabas_testudineus
MGP_PahariEiJ_G0026186	Rbm38	92	78.182	ENSACAG00000016238	RBM38	95	71.967	Anolis_carolinensis
MGP_PahariEiJ_G0026186	Rbm38	91	94.907	ENSANAG00000031959	RBM38	100	95.041	Aotus_nancymaae
MGP_PahariEiJ_G0026186	Rbm38	94	63.374	ENSACLG00000019514	-	92	63.362	Astatotilapia_calliptera
MGP_PahariEiJ_G0026186	Rbm38	94	65.106	ENSAMXG00000015601	-	97	63.830	Astyanax_mexicanus
MGP_PahariEiJ_G0026186	Rbm38	78	63.784	ENSAMXG00000038120	rbm38	70	67.683	Astyanax_mexicanus
MGP_PahariEiJ_G0026186	Rbm38	100	90.377	ENSBTAG00000008105	RBM38	100	90.377	Bos_taurus
MGP_PahariEiJ_G0026186	Rbm38	55	79.070	WBGene00006321	sup-12	59	84.270	Caenorhabditis_elegans
MGP_PahariEiJ_G0026186	Rbm38	100	93.305	ENSCJAG00000019139	RBM38	100	95.041	Callithrix_jacchus
MGP_PahariEiJ_G0026186	Rbm38	100	91.213	ENSCAFG00020021943	RBM38	100	91.213	Canis_lupus_dingo
MGP_PahariEiJ_G0026186	Rbm38	100	89.540	ENSCHIG00000002609	RBM38	100	89.540	Capra_hircus
MGP_PahariEiJ_G0026186	Rbm38	100	93.305	ENSCPOG00000012781	RBM38	100	93.305	Cavia_porcellus
MGP_PahariEiJ_G0026186	Rbm38	100	93.305	ENSCCAG00000036872	RBM38	100	95.041	Cebus_capucinus
MGP_PahariEiJ_G0026186	Rbm38	100	92.887	ENSCATG00000032133	RBM38	100	95.041	Cercocebus_atys
MGP_PahariEiJ_G0026186	Rbm38	96	93.421	ENSCLAG00000005906	RBM38	99	93.421	Chinchilla_lanigera
MGP_PahariEiJ_G0026186	Rbm38	100	92.887	ENSCSAG00000015503	RBM38	100	92.887	Chlorocebus_sabaeus
MGP_PahariEiJ_G0026186	Rbm38	91	80.734	ENSCPBG00000024059	RBM38	100	77.523	Chrysemys_picta_bellii
MGP_PahariEiJ_G0026186	Rbm38	99	71.429	ENSCANG00000030105	-	89	71.429	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0026186	Rbm38	100	95.781	ENSCGRG00001012928	Rbm38	100	95.781	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0026186	Rbm38	60	76.596	ENSCSEG00000020943	rbm38	50	69.333	Cynoglossus_semilaevis
MGP_PahariEiJ_G0026186	Rbm38	93	67.982	ENSCSEG00000004701	-	96	65.789	Cynoglossus_semilaevis
MGP_PahariEiJ_G0026186	Rbm38	89	59.052	ENSCVAG00000015952	rbm38	91	59.657	Cyprinodon_variegatus
MGP_PahariEiJ_G0026186	Rbm38	89	66.094	ENSCVAG00000005472	-	92	64.103	Cyprinodon_variegatus
MGP_PahariEiJ_G0026186	Rbm38	58	95.556	ENSDARG00000058818	rbm38	92	61.435	Danio_rerio
MGP_PahariEiJ_G0026186	Rbm38	91	87.963	ENSDNOG00000032004	RBM38	100	84.722	Dasypus_novemcinctus
MGP_PahariEiJ_G0026186	Rbm38	78	78.689	ENSEBUG00000015164	rbm38	68	81.818	Eptatretus_burgeri
MGP_PahariEiJ_G0026186	Rbm38	100	89.958	ENSECAG00000007700	RBM38	100	89.958	Equus_caballus
MGP_PahariEiJ_G0026186	Rbm38	100	88.750	ENSEEUG00000013489	RBM38	100	87.917	Erinaceus_europaeus
MGP_PahariEiJ_G0026186	Rbm38	92	64.435	ENSELUG00000005849	-	95	62.869	Esox_lucius
MGP_PahariEiJ_G0026186	Rbm38	63	88.000	ENSELUG00000000585	-	87	64.677	Esox_lucius
MGP_PahariEiJ_G0026186	Rbm38	100	91.632	ENSFCAG00000042916	RBM38	100	93.388	Felis_catus
MGP_PahariEiJ_G0026186	Rbm38	75	82.584	ENSFALG00000010805	RBM38	88	81.871	Ficedula_albicollis
MGP_PahariEiJ_G0026186	Rbm38	89	71.759	ENSFHEG00000006160	-	92	68.837	Fundulus_heteroclitus
MGP_PahariEiJ_G0026186	Rbm38	89	57.082	ENSFHEG00000017748	rbm38	91	57.082	Fundulus_heteroclitus
MGP_PahariEiJ_G0026186	Rbm38	58	93.333	ENSGMOG00000016655	-	96	71.271	Gadus_morhua
MGP_PahariEiJ_G0026186	Rbm38	91	78.899	ENSGALG00000026081	RBM38	100	75.688	Gallus_gallus
MGP_PahariEiJ_G0026186	Rbm38	89	62.736	ENSGACG00000015224	rbm38	98	63.380	Gasterosteus_aculeatus
MGP_PahariEiJ_G0026186	Rbm38	91	67.411	ENSGACG00000009873	-	100	63.839	Gasterosteus_aculeatus
MGP_PahariEiJ_G0026186	Rbm38	91	81.193	ENSGAGG00000001187	RBM38	100	77.982	Gopherus_agassizii
MGP_PahariEiJ_G0026186	Rbm38	94	67.391	ENSHBUG00000011778	-	97	64.783	Haplochromis_burtoni
MGP_PahariEiJ_G0026186	Rbm38	100	58.367	ENSHBUG00000012058	rbm38	100	58.367	Haplochromis_burtoni
MGP_PahariEiJ_G0026186	Rbm38	100	91.213	ENSHGLG00000015077	RBM38	100	91.213	Heterocephalus_glaber_female
MGP_PahariEiJ_G0026186	Rbm38	56	79.545	ENSHCOG00000019040	rbm38	65	68.212	Hippocampus_comes
MGP_PahariEiJ_G0026186	Rbm38	71	80.702	ENSHCOG00000005622	-	55	67.857	Hippocampus_comes
MGP_PahariEiJ_G0026186	Rbm38	100	62.302	ENSIPUG00000019349	-	100	60.317	Ictalurus_punctatus
MGP_PahariEiJ_G0026186	Rbm38	95	93.421	ENSJJAG00000016299	-	95	93.421	Jaculus_jaculus
MGP_PahariEiJ_G0026186	Rbm38	89	52.966	ENSKMAG00000012402	rbm38	98	52.966	Kryptolebias_marmoratus
MGP_PahariEiJ_G0026186	Rbm38	94	66.087	ENSLBEG00000016163	RBM38	92	66.055	Labrus_bergylta
MGP_PahariEiJ_G0026186	Rbm38	89	58.369	ENSLBEG00000018878	rbm38	91	58.369	Labrus_bergylta
MGP_PahariEiJ_G0026186	Rbm38	92	71.239	ENSLOCG00000003456	rbm38	95	69.027	Lepisosteus_oculatus
MGP_PahariEiJ_G0026186	Rbm38	97	93.103	ENSMFAG00000043808	RBM38	97	93.103	Macaca_fascicularis
MGP_PahariEiJ_G0026186	Rbm38	100	92.887	ENSMMUG00000031391	RBM38	100	95.041	Macaca_mulatta
MGP_PahariEiJ_G0026186	Rbm38	100	92.887	ENSMNEG00000034683	RBM38	100	95.041	Macaca_nemestrina
MGP_PahariEiJ_G0026186	Rbm38	56	70.455	ENSMLEG00000043261	-	88	81.651	Mandrillus_leucophaeus
MGP_PahariEiJ_G0026186	Rbm38	89	57.511	ENSMAMG00000024135	rbm38	91	57.511	Mastacembelus_armatus
MGP_PahariEiJ_G0026186	Rbm38	94	62.397	ENSMAMG00000020499	RBM38	97	61.157	Mastacembelus_armatus
MGP_PahariEiJ_G0026186	Rbm38	89	57.082	ENSMZEG00005026036	rbm38	91	57.082	Maylandia_zebra
MGP_PahariEiJ_G0026186	Rbm38	94	67.391	ENSMZEG00005000849	-	97	64.783	Maylandia_zebra
MGP_PahariEiJ_G0026186	Rbm38	100	95.359	ENSMAUG00000021211	Rbm38	100	95.359	Mesocricetus_auratus
MGP_PahariEiJ_G0026186	Rbm38	91	94.907	ENSMICG00000038011	RBM38	100	94.907	Microcebus_murinus
MGP_PahariEiJ_G0026186	Rbm38	100	95.359	ENSMOCG00000008715	Rbm38	100	95.359	Microtus_ochrogaster
MGP_PahariEiJ_G0026186	Rbm38	97	66.239	ENSMMOG00000020051	-	97	63.675	Mola_mola
MGP_PahariEiJ_G0026186	Rbm38	100	77.500	ENSMODG00000016458	RBM38	100	75.000	Monodelphis_domestica
MGP_PahariEiJ_G0026186	Rbm38	71	80.702	ENSMALG00000004680	RBM38	72	68.394	Monopterus_albus
MGP_PahariEiJ_G0026186	Rbm38	63	79.592	ENSMALG00000022327	rbm38	67	70.968	Monopterus_albus
MGP_PahariEiJ_G0026186	Rbm38	100	98.718	MGP_CAROLIEiJ_G0024745	Rbm38	100	98.718	Mus_caroli
MGP_PahariEiJ_G0026186	Rbm38	100	98.718	ENSMUSG00000027510	Rbm38	100	98.718	Mus_musculus
MGP_PahariEiJ_G0026186	Rbm38	100	98.734	MGP_SPRETEiJ_G0025665	Rbm38	100	98.734	Mus_spretus
MGP_PahariEiJ_G0026186	Rbm38	78	94.054	ENSMPUG00000006518	RBM38	95	92.670	Mustela_putorius_furo
MGP_PahariEiJ_G0026186	Rbm38	91	89.815	ENSMLUG00000011140	RBM38	100	89.815	Myotis_lucifugus
MGP_PahariEiJ_G0026186	Rbm38	97	83.544	ENSNGAG00000014017	-	64	87.838	Nannospalax_galili
MGP_PahariEiJ_G0026186	Rbm38	94	63.934	ENSNBRG00000022545	-	92	63.362	Neolamprologus_brichardi
MGP_PahariEiJ_G0026186	Rbm38	100	57.724	ENSNBRG00000022685	rbm38	99	57.724	Neolamprologus_brichardi
MGP_PahariEiJ_G0026186	Rbm38	90	79.167	ENSMEUG00000005475	-	100	74.638	Notamacropus_eugenii
MGP_PahariEiJ_G0026186	Rbm38	100	93.305	ENSODEG00000007980	RBM38	100	93.305	Octodon_degus
MGP_PahariEiJ_G0026186	Rbm38	93	63.786	ENSONIG00000020324	-	92	63.203	Oreochromis_niloticus
MGP_PahariEiJ_G0026186	Rbm38	89	57.328	ENSONIG00000017073	rbm38	93	57.328	Oreochromis_niloticus
MGP_PahariEiJ_G0026186	Rbm38	91	79.630	ENSOANG00000009259	RBM38	83	76.389	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0026186	Rbm38	63	82.000	ENSORLG00000012154	rbm38	91	54.701	Oryzias_latipes
MGP_PahariEiJ_G0026186	Rbm38	89	62.661	ENSORLG00000027180	-	92	62.069	Oryzias_latipes
MGP_PahariEiJ_G0026186	Rbm38	63	82.000	ENSORLG00020017871	rbm38	91	55.556	Oryzias_latipes_hni
MGP_PahariEiJ_G0026186	Rbm38	89	62.661	ENSORLG00020020751	-	92	62.069	Oryzias_latipes_hni
MGP_PahariEiJ_G0026186	Rbm38	90	58.525	ENSORLG00015012606	rbm38	90	58.525	Oryzias_latipes_hsok
MGP_PahariEiJ_G0026186	Rbm38	89	62.931	ENSORLG00015017040	-	92	62.931	Oryzias_latipes_hsok
MGP_PahariEiJ_G0026186	Rbm38	89	55.128	ENSOMEG00000006805	rbm38	91	55.128	Oryzias_melastigma
MGP_PahariEiJ_G0026186	Rbm38	89	62.771	ENSOMEG00000023912	-	92	62.609	Oryzias_melastigma
MGP_PahariEiJ_G0026186	Rbm38	100	92.917	ENSOGAG00000029136	RBM38	100	92.917	Otolemur_garnettii
MGP_PahariEiJ_G0026186	Rbm38	63	97.959	ENSPPAG00000040327	-	85	81.159	Pan_paniscus
MGP_PahariEiJ_G0026186	Rbm38	100	91.632	ENSPPRG00000009507	RBM38	100	93.388	Panthera_pardus
MGP_PahariEiJ_G0026186	Rbm38	63	100.000	ENSPTRG00000045845	-	70	95.312	Pan_troglodytes
MGP_PahariEiJ_G0026186	Rbm38	92	91.892	ENSPTRG00000013661	RBM38	100	95.041	Pan_troglodytes
MGP_PahariEiJ_G0026186	Rbm38	98	73.504	ENSPANG00000033127	-	99	73.191	Papio_anubis
MGP_PahariEiJ_G0026186	Rbm38	100	92.887	ENSPANG00000020919	-	100	95.041	Papio_anubis
MGP_PahariEiJ_G0026186	Rbm38	96	61.694	ENSPKIG00000025417	rbm38	98	60.246	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0026186	Rbm38	89	67.273	ENSPKIG00000018122	-	100	88.034	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0026186	Rbm38	97	78.355	ENSPSIG00000011649	RBM38	97	75.325	Pelodiscus_sinensis
MGP_PahariEiJ_G0026186	Rbm38	92	60.000	ENSPMGG00000017094	-	94	59.833	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0026186	Rbm38	91	57.143	ENSPMGG00000011343	rbm38	65	69.565	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0026186	Rbm38	100	77.500	ENSPCIG00000013648	RBM38	100	75.000	Phascolarctos_cinereus
MGP_PahariEiJ_G0026186	Rbm38	58	86.667	ENSPFOG00000011658	rbm38	91	57.265	Poecilia_formosa
MGP_PahariEiJ_G0026186	Rbm38	89	65.957	ENSPLAG00000002500	-	92	64.530	Poecilia_latipinna
MGP_PahariEiJ_G0026186	Rbm38	89	55.983	ENSPLAG00000005218	rbm38	91	57.265	Poecilia_latipinna
MGP_PahariEiJ_G0026186	Rbm38	58	86.667	ENSPMEG00000015770	rbm38	91	57.265	Poecilia_mexicana
MGP_PahariEiJ_G0026186	Rbm38	58	86.667	ENSPREG00000007398	rbm38	91	57.692	Poecilia_reticulata
MGP_PahariEiJ_G0026186	Rbm38	100	93.333	ENSPCOG00000026201	RBM38	100	94.262	Propithecus_coquereli
MGP_PahariEiJ_G0026186	Rbm38	90	90.278	ENSPVAG00000006457	RBM38	100	64.017	Pteropus_vampyrus
MGP_PahariEiJ_G0026186	Rbm38	89	69.725	ENSPNYG00000019727	-	100	88.034	Pundamilia_nyererei
MGP_PahariEiJ_G0026186	Rbm38	100	57.202	ENSPNYG00000021373	rbm38	100	55.600	Pundamilia_nyererei
MGP_PahariEiJ_G0026186	Rbm38	60	91.489	ENSPNAG00000010596	rbm38	88	61.972	Pygocentrus_nattereri
MGP_PahariEiJ_G0026186	Rbm38	92	66.234	ENSPNAG00000015123	-	96	77.273	Pygocentrus_nattereri
MGP_PahariEiJ_G0026186	Rbm38	100	96.624	ENSRNOG00000006420	Rbm38	100	96.624	Rattus_norvegicus
MGP_PahariEiJ_G0026186	Rbm38	100	76.151	ENSRROG00000036388	-	100	76.151	Rhinopithecus_roxellana
MGP_PahariEiJ_G0026186	Rbm38	91	94.907	ENSSBOG00000031053	RBM38	100	97.196	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0026186	Rbm38	94	64.935	ENSSFOG00015004453	rbm38	92	66.818	Scleropages_formosus
MGP_PahariEiJ_G0026186	Rbm38	94	63.265	ENSSDUG00000021082	RBM38	92	62.931	Seriola_dumerili
MGP_PahariEiJ_G0026186	Rbm38	89	59.657	ENSSDUG00000022611	rbm38	91	59.657	Seriola_dumerili
MGP_PahariEiJ_G0026186	Rbm38	94	63.265	ENSSLDG00000011778	RBM38	92	62.931	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0026186	Rbm38	97	59.746	ENSSLDG00000010845	rbm38	97	59.746	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0026186	Rbm38	94	64.889	ENSSPAG00000020989	RBM38	91	65.888	Stegastes_partitus
MGP_PahariEiJ_G0026186	Rbm38	89	58.369	ENSSPAG00000011113	rbm38	91	58.369	Stegastes_partitus
MGP_PahariEiJ_G0026186	Rbm38	100	92.050	ENSSSCG00000007504	RBM38	100	92.050	Sus_scrofa
MGP_PahariEiJ_G0026186	Rbm38	89	56.332	ENSTRUG00000024954	rbm38	91	55.895	Takifugu_rubripes
MGP_PahariEiJ_G0026186	Rbm38	94	63.934	ENSTRUG00000019869	-	92	64.224	Takifugu_rubripes
MGP_PahariEiJ_G0026186	Rbm38	89	68.778	ENSTNIG00000007093	-	97	66.516	Tetraodon_nigroviridis
MGP_PahariEiJ_G0026186	Rbm38	90	75.714	ENSTBEG00000001689	-	64	83.898	Tupaia_belangeri
MGP_PahariEiJ_G0026186	Rbm38	100	92.050	ENSUAMG00000019780	RBM38	100	92.050	Ursus_americanus
MGP_PahariEiJ_G0026186	Rbm38	100	91.213	ENSVVUG00000017246	RBM38	100	91.213	Vulpes_vulpes
MGP_PahariEiJ_G0026186	Rbm38	92	73.778	ENSXETG00000011268	rbm38	100	72.000	Xenopus_tropicalis
MGP_PahariEiJ_G0026186	Rbm38	59	93.478	ENSXCOG00000017324	-	60	77.444	Xiphophorus_couchianus
MGP_PahariEiJ_G0026186	Rbm38	89	57.511	ENSXMAG00000023662	rbm38	91	57.511	Xiphophorus_maculatus