EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0026262 (Gene tree)
Gene ID: 110317847
Gene Symbol: Prpf6
Alias: 1190003A07Rik|2610031L17Rik|ANT-1|U5-102K
Full Name: pre-mRNA processing factor 6
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 59090 bases
Position: chr3:163877608-163936697
Accession: 110317847
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0067823	PRP1_N	PF06424.12	3e-57	1	1
MGP_PahariEiJ_P0067824	PRP1_N	PF06424.12	3e-57	1	1
MGP_PahariEiJ_P0067819	PRP1_N	PF06424.12	9.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0067819	-	359	-	MGP_PahariEiJ_P0067819	54 (aa)	-	UPI0001889B64
MGP_PahariEiJ_T0067824	-	3035	XM_021192672	MGP_PahariEiJ_P0067824	941 (aa)	XP_021048331	UPI0003599B27
MGP_PahariEiJ_T0067825	-	2494	-	-	- (aa)	-	-
MGP_PahariEiJ_T0067823	-	3031	-	MGP_PahariEiJ_P0067823	941 (aa)	-	UPI0003599B27

Gene Model

Click here to download MGP_PahariEiJ_G0026262's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0026262's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSG00000101161	PRPF6	100	98.300	Homo_sapiens
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSAPOG00000010395	prpf6	96	93.624	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSAMEG00000001916	PRPF6	99	97.452	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0026262	Prpf6	100	92.880	ENSACIG00000019862	prpf6	96	93.305	Amphilophus_citrinellus
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSAOCG00000012988	prpf6	96	93.518	Amphiprion_ocellaris
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSAPEG00000008301	prpf6	100	86.929	Amphiprion_percula
MGP_PahariEiJ_G0026262	Prpf6	100	92.561	ENSATEG00000005581	prpf6	96	92.986	Anabas_testudineus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSACAG00000006464	PRPF6	95	98.087	Anolis_carolinensis
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSANAG00000012661	PRPF6	100	98.940	Aotus_nancymaae
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSACLG00000025875	prpf6	96	93.199	Astatotilapia_calliptera
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSAMXG00000001929	prpf6	96	93.723	Astyanax_mexicanus
MGP_PahariEiJ_G0026262	Prpf6	100	98.406	ENSBTAG00000011656	PRPF6	100	98.406	Bos_taurus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSCJAG00000010616	PRPF6	100	98.406	Callithrix_jacchus
MGP_PahariEiJ_G0026262	Prpf6	100	98.725	ENSCAFG00000013165	PRPF6	100	98.725	Canis_familiaris
MGP_PahariEiJ_G0026262	Prpf6	100	98.725	ENSCAFG00020002050	PRPF6	100	98.725	Canis_lupus_dingo
MGP_PahariEiJ_G0026262	Prpf6	100	98.406	ENSCHIG00000018187	PRPF6	100	98.406	Capra_hircus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSTSYG00000007814	PRPF6	100	99.150	Carlito_syrichta
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSCAPG00000015077	PRPF6	100	98.364	Cavia_aperea
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSCPOG00000007518	PRPF6	100	99.681	Cavia_porcellus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSCCAG00000024564	PRPF6	100	95.218	Cebus_capucinus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSCATG00000037473	PRPF6	100	98.193	Cercocebus_atys
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSCLAG00000003854	PRPF6	100	95.643	Chinchilla_lanigera
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSCSAG00000016742	PRPF6	100	93.136	Chlorocebus_sabaeus
MGP_PahariEiJ_G0026262	Prpf6	85	81.301	ENSCHOG00000003315	-	100	81.301	Choloepus_hoffmanni
MGP_PahariEiJ_G0026262	Prpf6	100	98.193	ENSCPBG00000013964	PRPF6	96	98.193	Chrysemys_picta_bellii
MGP_PahariEiJ_G0026262	Prpf6	99	73.573	ENSCING00000008817	-	99	73.573	Ciona_intestinalis
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSCANG00000038230	PRPF6	100	98.193	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSCGRG00001022666	Prpf6	100	99.894	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSCSEG00000018561	prpf6	100	87.779	Cynoglossus_semilaevis
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSCVAG00000010550	prpf6	96	93.518	Cyprinodon_variegatus
MGP_PahariEiJ_G0026262	Prpf6	100	92.667	ENSDARG00000091367	prpf6	99	93.092	Danio_rerio
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSDNOG00000040544	PRPF6	100	97.662	Dasypus_novemcinctus
MGP_PahariEiJ_G0026262	Prpf6	91	98.364	ENSDORG00000005406	Prpf6	100	98.364	Dipodomys_ordii
MGP_PahariEiJ_G0026262	Prpf6	99	72.013	FBgn0036828	CG6841	98	72.318	Drosophila_melanogaster
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSETEG00000004447	PRPF6	85	95.760	Echinops_telfairi
MGP_PahariEiJ_G0026262	Prpf6	99	87.169	ENSEBUG00000008835	prpf6	99	87.169	Eptatretus_burgeri
MGP_PahariEiJ_G0026262	Prpf6	100	98.512	ENSEASG00005023115	PRPF6	100	98.512	Equus_asinus_asinus
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSECAG00000013983	PRPF6	100	94.261	Equus_caballus
MGP_PahariEiJ_G0026262	Prpf6	90	100.000	ENSEEUG00000000180	PRPF6	82	100.000	Erinaceus_europaeus
MGP_PahariEiJ_G0026262	Prpf6	100	92.593	ENSELUG00000001945	prpf6	93	91.605	Esox_lucius
MGP_PahariEiJ_G0026262	Prpf6	100	98.512	ENSFCAG00000001183	PRPF6	100	98.512	Felis_catus
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSFALG00000010326	-	97	98.087	Ficedula_albicollis
MGP_PahariEiJ_G0026262	Prpf6	100	90.436	ENSFALG00000006046	-	97	90.436	Ficedula_albicollis
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSFDAG00000006451	PRPF6	100	99.660	Fukomys_damarensis
MGP_PahariEiJ_G0026262	Prpf6	100	94.444	ENSFHEG00000000560	prpf6	96	93.730	Fundulus_heteroclitus
MGP_PahariEiJ_G0026262	Prpf6	100	89.535	ENSGMOG00000015622	prpf6	99	89.535	Gadus_morhua
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSGALG00000006001	PRPF6	100	98.087	Gallus_gallus
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSGAFG00000021109	prpf6	96	88.842	Gambusia_affinis
MGP_PahariEiJ_G0026262	Prpf6	100	91.605	ENSGACG00000002576	prpf6	99	91.605	Gasterosteus_aculeatus
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSGAGG00000008653	PRPF6	96	98.087	Gopherus_agassizii
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSGGOG00000016876	PRPF6	100	98.300	Gorilla_gorilla
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSHBUG00000004496	prpf6	96	93.199	Haplochromis_burtoni
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSHGLG00000009222	PRPF6	100	99.469	Heterocephalus_glaber_female
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSHGLG00100016600	PRPF6	100	99.455	Heterocephalus_glaber_male
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSHCOG00000011513	prpf6	96	92.030	Hippocampus_comes
MGP_PahariEiJ_G0026262	Prpf6	100	93.836	ENSIPUG00000004912	prpf6	96	93.836	Ictalurus_punctatus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSSTOG00000002922	PRPF6	100	96.709	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSJJAG00000000836	Prpf6	100	99.469	Jaculus_jaculus
MGP_PahariEiJ_G0026262	Prpf6	100	92.561	ENSKMAG00000017800	prpf6	96	92.986	Kryptolebias_marmoratus
MGP_PahariEiJ_G0026262	Prpf6	100	92.593	ENSLBEG00000012582	prpf6	96	92.242	Labrus_bergylta
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSLOCG00000004827	prpf6	96	93.836	Lepisosteus_oculatus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSLAFG00000005272	PRPF6	100	97.981	Loxodonta_africana
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSMFAG00000037542	PRPF6	100	98.193	Macaca_fascicularis
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSMMUG00000015558	PRPF6	98	99.653	Macaca_mulatta
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSMNEG00000045555	PRPF6	100	83.898	Macaca_nemestrina
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSMAMG00000010718	prpf6	96	93.305	Mastacembelus_armatus
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSMZEG00005026539	prpf6	100	92.744	Maylandia_zebra
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSMZEG00005015261	-	99	92.675	Maylandia_zebra
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSMGAG00000006634	PRPF6	100	98.037	Meleagris_gallopavo
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSMAUG00000013969	Prpf6	100	100.000	Mesocricetus_auratus
MGP_PahariEiJ_G0026262	Prpf6	87	98.540	ENSMICG00000017793	PRPF6	99	98.540	Microcebus_murinus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSMOCG00000001701	Prpf6	100	99.894	Microtus_ochrogaster
MGP_PahariEiJ_G0026262	Prpf6	100	91.923	ENSMMOG00000020419	prpf6	100	92.349	Mola_mola
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSMODG00000017051	PRPF6	99	98.767	Monodelphis_domestica
MGP_PahariEiJ_G0026262	Prpf6	100	92.593	ENSMALG00000000089	prpf6	100	93.018	Monopterus_albus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	Mus_caroli
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSMUSG00000002455	Prpf6	100	100.000	Mus_musculus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	MGP_SPRETEiJ_G0025741	Prpf6	100	100.000	Mus_spretus
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSMPUG00000008673	PRPF6	99	98.093	Mustela_putorius_furo
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSNGAG00000003365	Prpf6	100	99.787	Nannospalax_galili
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSNBRG00000015025	prpf6	96	93.305	Neolamprologus_brichardi
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSNLEG00000010208	PRPF6	100	98.193	Nomascus_leucogenys
MGP_PahariEiJ_G0026262	Prpf6	100	88.735	ENSMEUG00000009824	-	90	88.735	Notamacropus_eugenii
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSODEG00000004841	PRPF6	100	93.624	Octodon_degus
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSONIG00000017406	prpf6	96	93.199	Oreochromis_niloticus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSOANG00000004920	PRPF6	100	98.406	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSOCUG00000014151	PRPF6	100	97.210	Oryctolagus_cuniculus
MGP_PahariEiJ_G0026262	Prpf6	100	92.561	ENSORLG00000009592	prpf6	96	92.561	Oryzias_latipes
MGP_PahariEiJ_G0026262	Prpf6	100	92.667	ENSORLG00020001458	prpf6	96	92.667	Oryzias_latipes_hni
MGP_PahariEiJ_G0026262	Prpf6	100	92.667	ENSORLG00015018762	prpf6	96	92.667	Oryzias_latipes_hsok
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSOMEG00000012174	prpf6	96	92.986	Oryzias_melastigma
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSOGAG00000007573	PRPF6	100	91.401	Otolemur_garnettii
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSOARG00000008776	PRPF6	99	97.981	Ovis_aries
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSPPAG00000008686	PRPF6	100	98.300	Pan_paniscus
MGP_PahariEiJ_G0026262	Prpf6	100	98.512	ENSPPRG00000008497	PRPF6	100	98.512	Panthera_pardus
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSPTIG00000011184	PRPF6	97	98.473	Panthera_tigris_altaica
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSPTRG00000013765	PRPF6	100	98.300	Pan_troglodytes
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSPANG00000024135	PRPF6	100	97.662	Papio_anubis
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSPKIG00000005627	prpf6	99	94.793	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSPSIG00000007717	PRPF6	100	98.299	Pelodiscus_sinensis
MGP_PahariEiJ_G0026262	Prpf6	100	90.340	ENSPMGG00000008925	prpf6	96	90.552	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSPEMG00000016036	Prpf6	100	99.894	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0026262	Prpf6	99	88.523	ENSPMAG00000006144	prpf6	99	88.523	Petromyzon_marinus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSPCIG00000017909	PRPF6	100	98.512	Phascolarctos_cinereus
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSPFOG00000006431	prpf6	96	93.730	Poecilia_formosa
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSPLAG00000005974	prpf6	96	93.624	Poecilia_latipinna
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSPMEG00000009977	prpf6	96	93.836	Poecilia_mexicana
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSPREG00000017993	prpf6	92	93.730	Poecilia_reticulata
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSPPYG00000011256	PRPF6	100	97.768	Pongo_abelii
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSPCAG00000006536	PRPF6	88	99.673	Procavia_capensis
MGP_PahariEiJ_G0026262	Prpf6	100	98.512	ENSPCOG00000016881	PRPF6	100	98.512	Propithecus_coquereli
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSPVAG00000014316	PRPF6	100	92.667	Pteropus_vampyrus
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSPNYG00000001939	prpf6	96	81.615	Pundamilia_nyererei
MGP_PahariEiJ_G0026262	Prpf6	100	93.518	ENSPNAG00000015606	prpf6	96	93.943	Pygocentrus_nattereri
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSRNOG00000051498	Prpf6	100	99.894	Rattus_norvegicus
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSRBIG00000043613	PRPF6	100	98.193	Rhinopithecus_bieti
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSRROG00000040969	PRPF6	98	98.270	Rhinopithecus_roxellana
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSSBOG00000020632	PRPF6	91	95.398	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSSHAG00000016810	PRPF6	100	98.512	Sarcophilus_harrisii
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSSFOG00015020859	prpf6	100	95.059	Scleropages_formosus
MGP_PahariEiJ_G0026262	Prpf6	100	92.136	ENSSMAG00000008112	prpf6	96	92.136	Scophthalmus_maximus
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSSDUG00000016142	prpf6	96	93.199	Seriola_dumerili
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSSLDG00000025283	prpf6	100	89.692	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSSPUG00000018260	PRPF6	100	96.825	Sphenodon_punctatus
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSSPAG00000015850	prpf6	96	93.199	Stegastes_partitus
MGP_PahariEiJ_G0026262	Prpf6	100	98.406	ENSSSCG00000029119	PRPF6	100	98.299	Sus_scrofa
MGP_PahariEiJ_G0026262	Prpf6	100	98.193	ENSTGUG00000007221	PRPF6	99	98.193	Taeniopygia_guttata
MGP_PahariEiJ_G0026262	Prpf6	100	91.711	ENSTRUG00000002920	prpf6	96	92.136	Takifugu_rubripes
MGP_PahariEiJ_G0026262	Prpf6	100	85.412	ENSTNIG00000017873	prpf6	100	85.835	Tetraodon_nigroviridis
MGP_PahariEiJ_G0026262	Prpf6	100	100.000	ENSTBEG00000005348	PRPF6	85	98.895	Tupaia_belangeri
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSTTRG00000013068	PRPF6	100	97.875	Tursiops_truncatus
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSUMAG00000021631	PRPF6	98	96.957	Ursus_maritimus
MGP_PahariEiJ_G0026262	Prpf6	100	98.725	ENSVVUG00000014948	PRPF6	100	98.725	Vulpes_vulpes
MGP_PahariEiJ_G0026262	Prpf6	100	98.148	ENSXETG00000012054	prpf6	97	96.493	Xenopus_tropicalis
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSXCOG00000008082	prpf6	96	93.836	Xiphophorus_couchianus
MGP_PahariEiJ_G0026262	Prpf6	100	96.296	ENSXMAG00000015581	prpf6	96	93.836	Xiphophorus_maculatus