EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0026403 (Gene tree)
Gene ID: -
Gene Symbol: Larp1b
Alias: 1700108L22Rik|4933421B21Rik|Larp2
Full Name: La ribonucleoprotein domain family%2C member 1B
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 92270 bases
Position: chr4:35037960-35130229
Accession: 1914604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0068452	La	PF05383.17	2.8e-22	1	1
MGP_PahariEiJ_P0068456	La	PF05383.17	2.8e-22	1	1
MGP_PahariEiJ_P0068453	La	PF05383.17	5.4e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0068458	-	619	-	-	- (aa)	-	-
MGP_PahariEiJ_T0068459	-	4000	-	-	- (aa)	-	-
MGP_PahariEiJ_T0068466	-	158	-	-	- (aa)	-	-
MGP_PahariEiJ_T0068465	-	1529	-	-	- (aa)	-	-
MGP_PahariEiJ_T0068461	-	1041	-	MGP_PahariEiJ_P0068461	255 (aa)	-	-
MGP_PahariEiJ_T0068452	-	2364	-	MGP_PahariEiJ_P0068452	335 (aa)	-	-
MGP_PahariEiJ_T0068453	-	1504	-	MGP_PahariEiJ_P0068453	288 (aa)	-	-
MGP_PahariEiJ_T0068454	-	373	-	MGP_PahariEiJ_P0068454	14 (aa)	-	UPI000620A999
MGP_PahariEiJ_T0068455	-	103	-	-	- (aa)	-	-
MGP_PahariEiJ_T0068456	-	1581	-	MGP_PahariEiJ_P0068456	335 (aa)	-	-
MGP_PahariEiJ_T0068457	-	1585	-	MGP_PahariEiJ_P0068457	369 (aa)	-	-
MGP_PahariEiJ_T0068463	-	822	-	MGP_PahariEiJ_P0068463	273 (aa)	-	-
MGP_PahariEiJ_T0068464	-	320	-	-	- (aa)	-	-
MGP_PahariEiJ_T0068460	-	1568	-	-	- (aa)	-	-
MGP_PahariEiJ_T0068462	-	1874	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0026403's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0026403's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0026403	Larp1b	100	88.358	ENSG00000138709	LARP1B	100	88.358	Homo_sapiens
MGP_PahariEiJ_G0026403	Larp1b	100	90.149	ENSAMEG00000002748	LARP1B	100	90.149	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0026403	Larp1b	99	77.946	ENSANAG00000034618	LARP1B	96	77.946	Aotus_nancymaae
MGP_PahariEiJ_G0026403	Larp1b	98	87.576	ENSBTAG00000012135	LARP1B	63	87.576	Bos_taurus
MGP_PahariEiJ_G0026403	Larp1b	100	90.448	ENSCJAG00000003338	LARP1B	100	90.448	Callithrix_jacchus
MGP_PahariEiJ_G0026403	Larp1b	100	90.278	ENSCAFG00020018899	LARP1B	100	90.278	Canis_lupus_dingo
MGP_PahariEiJ_G0026403	Larp1b	100	87.889	ENSCHIG00000023144	LARP1B	100	87.889	Capra_hircus
MGP_PahariEiJ_G0026403	Larp1b	99	86.411	ENSTSYG00000002037	-	99	86.411	Carlito_syrichta
MGP_PahariEiJ_G0026403	Larp1b	76	93.750	ENSCPOG00000034668	-	90	93.750	Cavia_porcellus
MGP_PahariEiJ_G0026403	Larp1b	99	89.820	ENSCCAG00000021948	LARP1B	99	89.820	Cebus_capucinus
MGP_PahariEiJ_G0026403	Larp1b	100	85.970	ENSCATG00000013541	LARP1B	100	85.970	Cercocebus_atys
MGP_PahariEiJ_G0026403	Larp1b	100	84.722	ENSCLAG00000006448	-	100	84.722	Chinchilla_lanigera
MGP_PahariEiJ_G0026403	Larp1b	100	89.236	ENSCANG00000026958	LARP1B	100	89.236	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0026403	Larp1b	100	96.119	ENSCGRG00001004660	-	100	96.119	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0026403	Larp1b	100	95.821	ENSCGRG00000001914	-	100	95.821	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0026403	Larp1b	98	88.450	ENSDNOG00000018765	-	64	88.450	Dasypus_novemcinctus
MGP_PahariEiJ_G0026403	Larp1b	99	90.592	ENSEASG00005018106	LARP1B	99	90.592	Equus_asinus_asinus
MGP_PahariEiJ_G0026403	Larp1b	100	89.851	ENSFCAG00000014650	-	100	89.851	Felis_catus
MGP_PahariEiJ_G0026403	Larp1b	100	88.358	ENSGGOG00000015900	LARP1B	100	88.358	Gorilla_gorilla
MGP_PahariEiJ_G0026403	Larp1b	98	72.644	ENSHGLG00000013922	-	96	71.125	Heterocephalus_glaber_female
MGP_PahariEiJ_G0026403	Larp1b	100	85.274	ENSHGLG00000006728	-	99	85.616	Heterocephalus_glaber_female
MGP_PahariEiJ_G0026403	Larp1b	98	72.644	ENSHGLG00100016491	-	96	71.125	Heterocephalus_glaber_male
MGP_PahariEiJ_G0026403	Larp1b	100	86.111	ENSHGLG00100014041	-	95	86.111	Heterocephalus_glaber_male
MGP_PahariEiJ_G0026403	Larp1b	100	89.273	ENSSTOG00000008596	-	100	89.273	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0026403	Larp1b	96	71.340	ENSSTOG00000034510	-	87	71.340	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0026403	Larp1b	99	80.665	ENSSTOG00000021917	-	94	80.060	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0026403	Larp1b	90	74.903	ENSSTOG00000033183	-	96	74.400	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0026403	Larp1b	99	90.592	ENSJJAG00000022360	Larp1b	99	90.592	Jaculus_jaculus
MGP_PahariEiJ_G0026403	Larp1b	98	70.695	ENSLACG00000015247	LARP1B	85	68.976	Latimeria_chalumnae
MGP_PahariEiJ_G0026403	Larp1b	99	91.369	ENSLAFG00000008473	-	99	91.369	Loxodonta_africana
MGP_PahariEiJ_G0026403	Larp1b	100	64.583	ENSMFAG00000003306	-	93	87.586	Macaca_fascicularis
MGP_PahariEiJ_G0026403	Larp1b	100	89.552	ENSMFAG00000002218	LARP1B	100	89.552	Macaca_fascicularis
MGP_PahariEiJ_G0026403	Larp1b	100	89.552	ENSMMUG00000021347	LARP1B	100	89.552	Macaca_mulatta
MGP_PahariEiJ_G0026403	Larp1b	75	88.112	ENSMNEG00000027747	-	89	88.112	Macaca_nemestrina
MGP_PahariEiJ_G0026403	Larp1b	84	55.785	ENSMZEG00005002545	larp1b	54	55.185	Maylandia_zebra
MGP_PahariEiJ_G0026403	Larp1b	100	95.522	ENSMAUG00000007879	-	100	95.522	Mesocricetus_auratus
MGP_PahariEiJ_G0026403	Larp1b	98	81.119	ENSMICG00000037883	-	88	81.119	Microcebus_murinus
MGP_PahariEiJ_G0026403	Larp1b	97	68.098	ENSMICG00000028052	-	65	67.359	Microcebus_murinus
MGP_PahariEiJ_G0026403	Larp1b	100	91.642	ENSMICG00000036111	LARP1B	100	91.642	Microcebus_murinus
MGP_PahariEiJ_G0026403	Larp1b	79	96.958	ENSMOCG00000001490	Larp1b	95	96.958	Microtus_ochrogaster
MGP_PahariEiJ_G0026403	Larp1b	100	97.015	MGP_CAROLIEiJ_G0024962	Larp1b	100	97.015	Mus_caroli
MGP_PahariEiJ_G0026403	Larp1b	100	97.910	ENSMUSG00000025762	Larp1b	100	97.910	Mus_musculus
MGP_PahariEiJ_G0026403	Larp1b	100	97.910	MGP_SPRETEiJ_G0025897	Larp1b	100	97.910	Mus_spretus
MGP_PahariEiJ_G0026403	Larp1b	100	88.955	ENSNLEG00000013819	LARP1B	100	88.955	Nomascus_leucogenys
MGP_PahariEiJ_G0026403	Larp1b	100	85.075	ENSODEG00000001292	-	100	85.075	Octodon_degus
MGP_PahariEiJ_G0026403	Larp1b	100	88.060	ENSPPAG00000030439	LARP1B	100	88.060	Pan_paniscus
MGP_PahariEiJ_G0026403	Larp1b	100	89.851	ENSPPRG00000002743	-	100	89.851	Panthera_pardus
MGP_PahariEiJ_G0026403	Larp1b	100	89.851	ENSPTIG00000011225	LARP1B	100	89.851	Panthera_tigris_altaica
MGP_PahariEiJ_G0026403	Larp1b	100	88.358	ENSPTRG00000016437	LARP1B	100	88.358	Pan_troglodytes
MGP_PahariEiJ_G0026403	Larp1b	100	89.254	ENSPANG00000012488	LARP1B	100	89.254	Papio_anubis
MGP_PahariEiJ_G0026403	Larp1b	99	84.478	ENSPCIG00000026516	LARP1B	87	85.152	Phascolarctos_cinereus
MGP_PahariEiJ_G0026403	Larp1b	99	51.639	ENSPFOG00000022837	-	52	51.366	Poecilia_formosa
MGP_PahariEiJ_G0026403	Larp1b	79	60.965	ENSPREG00000005955	-	89	55.634	Poecilia_reticulata
MGP_PahariEiJ_G0026403	Larp1b	100	91.045	ENSPCOG00000021874	LARP1B	100	91.045	Propithecus_coquereli
MGP_PahariEiJ_G0026403	Larp1b	100	97.015	ENSRNOG00000038366	Larp1b	100	97.015	Rattus_norvegicus
MGP_PahariEiJ_G0026403	Larp1b	100	80.000	ENSRBIG00000038568	-	92	80.000	Rhinopithecus_bieti
MGP_PahariEiJ_G0026403	Larp1b	100	87.164	ENSRBIG00000039982	-	100	85.970	Rhinopithecus_bieti
MGP_PahariEiJ_G0026403	Larp1b	100	89.552	ENSRROG00000030771	LARP1B	100	89.552	Rhinopithecus_roxellana
MGP_PahariEiJ_G0026403	Larp1b	100	80.969	ENSRROG00000038525	-	96	80.969	Rhinopithecus_roxellana
MGP_PahariEiJ_G0026403	Larp1b	98	86.364	ENSSHAG00000014474	LARP1B	51	85.251	Sarcophilus_harrisii
MGP_PahariEiJ_G0026403	Larp1b	99	54.355	ENSSSCG00000040491	-	99	53.659	Sus_scrofa
MGP_PahariEiJ_G0026403	Larp1b	98	87.842	ENSSSCG00000034280	LARP1B	65	86.391	Sus_scrofa
MGP_PahariEiJ_G0026403	Larp1b	100	80.000	ENSUAMG00000016938	-	91	94.083	Ursus_americanus
MGP_PahariEiJ_G0026403	Larp1b	98	89.362	ENSVVUG00000011307	LARP1B	65	89.362	Vulpes_vulpes