EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0026409 (Gene tree)
Gene ID: 110320461
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 5981 bases
Position: chr4:39981790-39987770
Accession: 110320461
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0068511	RRM_5	PF13893.6	2e-14	1	4
MGP_PahariEiJ_P0068511	RRM_5	PF13893.6	2e-14	2	4
MGP_PahariEiJ_P0068511	RRM_5	PF13893.6	2e-14	3	4
MGP_PahariEiJ_P0068511	RRM_5	PF13893.6	2e-14	4	4
MGP_PahariEiJ_P0068512	RRM_5	PF13893.6	2e-14	1	4
MGP_PahariEiJ_P0068512	RRM_5	PF13893.6	2e-14	2	4
MGP_PahariEiJ_P0068512	RRM_5	PF13893.6	2e-14	3	4
MGP_PahariEiJ_P0068512	RRM_5	PF13893.6	2e-14	4	4
MGP_PahariEiJ_P0068513	RRM_5	PF13893.6	4.5e-06	1	2
MGP_PahariEiJ_P0068513	RRM_5	PF13893.6	4.5e-06	2	2
MGP_PahariEiJ_P0068511	RRM_1	PF00076.22	3.1e-83	1	4
MGP_PahariEiJ_P0068511	RRM_1	PF00076.22	3.1e-83	2	4
MGP_PahariEiJ_P0068511	RRM_1	PF00076.22	3.1e-83	3	4
MGP_PahariEiJ_P0068511	RRM_1	PF00076.22	3.1e-83	4	4
MGP_PahariEiJ_P0068512	RRM_1	PF00076.22	3.1e-83	1	4
MGP_PahariEiJ_P0068512	RRM_1	PF00076.22	3.1e-83	2	4
MGP_PahariEiJ_P0068512	RRM_1	PF00076.22	3.1e-83	3	4
MGP_PahariEiJ_P0068512	RRM_1	PF00076.22	3.1e-83	4	4
MGP_PahariEiJ_P0068513	RRM_1	PF00076.22	7.2e-41	1	2
MGP_PahariEiJ_P0068513	RRM_1	PF00076.22	7.2e-41	2	2
MGP_PahariEiJ_P0068514	RRM_1	PF00076.22	3.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0068511	-	5144	-	MGP_PahariEiJ_P0068511	370 (aa)	XP_021052151	UPI000A30C96E
MGP_PahariEiJ_T0068513	-	727	-	MGP_PahariEiJ_P0068513	172 (aa)	-	-
MGP_PahariEiJ_T0068512	-	5200	-	MGP_PahariEiJ_P0068512	370 (aa)	XP_021052151	UPI000A30C96E
MGP_PahariEiJ_T0068514	-	471	-	MGP_PahariEiJ_P0068514	50 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0026409's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0026409's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0026409	Pabpc4l	99	69.722	MGP_PahariEiJ_G0028765	Pabpc4	100	69.565
MGP_PahariEiJ_G0026409	Pabpc4l	96	34.940	MGP_PahariEiJ_G0028496	Elavl2	89	34.940
MGP_PahariEiJ_G0026409	Pabpc4l	98	61.350	MGP_PahariEiJ_G0026071	Pabpc1l	59	61.350
MGP_PahariEiJ_G0026409	Pabpc4l	62	41.558	MGP_PahariEiJ_G0031641	Rbmx	79	41.558
MGP_PahariEiJ_G0026409	Pabpc4l	98	57.983	MGP_PahariEiJ_G0031908	Pabpc5	96	58.082
MGP_PahariEiJ_G0026409	Pabpc4l	96	36.145	MGP_PahariEiJ_G0014760	Elavl3	91	36.145
MGP_PahariEiJ_G0026409	Pabpc4l	89	31.875	MGP_PahariEiJ_G0028896	Trnau1ap	89	34.211
MGP_PahariEiJ_G0026409	Pabpc4l	97	67.485	MGP_PahariEiJ_G0018950	Pabpc2	61	64.722
MGP_PahariEiJ_G0026409	Pabpc4l	65	34.211	MGP_PahariEiJ_G0025385	Celf1	55	37.879
MGP_PahariEiJ_G0026409	Pabpc4l	89	32.484	MGP_PahariEiJ_G0022332	Tia1	83	32.692
MGP_PahariEiJ_G0026409	Pabpc4l	52	30.337	MGP_PahariEiJ_G0028978	-	80	31.868
MGP_PahariEiJ_G0026409	Pabpc4l	97	30.065	MGP_PahariEiJ_G0028622	Elavl4	70	35.484
MGP_PahariEiJ_G0026409	Pabpc4l	94	30.464	MGP_PahariEiJ_G0021261	Elavl1	91	30.464
MGP_PahariEiJ_G0026409	Pabpc4l	96	37.500	MGP_PahariEiJ_G0026809	Sf3b4	54	37.500
MGP_PahariEiJ_G0026409	Pabpc4l	94	33.735	MGP_PahariEiJ_G0013755	Tial1	99	32.117
MGP_PahariEiJ_G0026409	Pabpc4l	97	68.675	MGP_PahariEiJ_G0019749	Pabpc1	59	66.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0026409	Pabpc4l	100	81.622	ENSG00000254535	PABPC4L	100	81.622	Homo_sapiens
MGP_PahariEiJ_G0026409	Pabpc4l	100	80.814	ENSANAG00000017199	PABPC4L	87	80.811	Aotus_nancymaae
MGP_PahariEiJ_G0026409	Pabpc4l	100	79.070	ENSBTAG00000046902	PABPC4L	99	79.675	Bos_taurus
MGP_PahariEiJ_G0026409	Pabpc4l	100	81.351	ENSCJAG00000045332	PABPC4L	86	81.351	Callithrix_jacchus
MGP_PahariEiJ_G0026409	Pabpc4l	100	72.000	ENSCAFG00020019182	-	55	69.767	Canis_lupus_dingo
MGP_PahariEiJ_G0026409	Pabpc4l	100	79.070	ENSCHIG00000007231	PABPC4L	99	79.675	Capra_hircus
MGP_PahariEiJ_G0026409	Pabpc4l	98	72.836	ENSCAPG00000000555	PABPC4L	100	72.836	Cavia_aperea
MGP_PahariEiJ_G0026409	Pabpc4l	100	70.000	ENSCPOG00000033167	PABPC4L	100	70.000	Cavia_porcellus
MGP_PahariEiJ_G0026409	Pabpc4l	100	81.081	ENSCCAG00000031681	PABPC4L	86	81.081	Cebus_capucinus
MGP_PahariEiJ_G0026409	Pabpc4l	100	76.744	ENSCLAG00000017628	PABPC4L	100	76.216	Chinchilla_lanigera
MGP_PahariEiJ_G0026409	Pabpc4l	100	81.977	ENSCANG00000037677	PABPC4L	99	81.977	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0026409	Pabpc4l	100	90.000	ENSCGRG00001002070	Pabpc4l	100	88.378	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0026409	Pabpc4l	100	90.000	ENSCGRG00000020086	Pabpc4l	100	88.378	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0026409	Pabpc4l	100	79.730	ENSDNOG00000031077	PABPC4L	95	79.730	Dasypus_novemcinctus
MGP_PahariEiJ_G0026409	Pabpc4l	100	80.233	ENSEASG00005007883	PABPC4L	99	80.233	Equus_asinus_asinus
MGP_PahariEiJ_G0026409	Pabpc4l	100	80.233	ENSECAG00000031416	PABPC4L	99	80.233	Equus_caballus
MGP_PahariEiJ_G0026409	Pabpc4l	100	78.000	ENSFCAG00000028270	PABPC4L	99	78.862	Felis_catus
MGP_PahariEiJ_G0026409	Pabpc4l	100	73.837	ENSFDAG00000019606	PABPC4L	99	73.837	Fukomys_damarensis
MGP_PahariEiJ_G0026409	Pabpc4l	100	81.395	ENSGGOG00000024991	PABPC4L	100	81.081	Gorilla_gorilla
MGP_PahariEiJ_G0026409	Pabpc4l	99	75.610	ENSHGLG00000020104	PABPC4L	99	75.610	Heterocephalus_glaber_female
MGP_PahariEiJ_G0026409	Pabpc4l	99	75.610	ENSHGLG00100020648	PABPC4L	99	75.610	Heterocephalus_glaber_male
MGP_PahariEiJ_G0026409	Pabpc4l	100	79.784	ENSSTOG00000019472	PABPC4L	99	79.784	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0026409	Pabpc4l	100	82.000	ENSJJAG00000004090	Pabpc4l	99	78.488	Jaculus_jaculus
MGP_PahariEiJ_G0026409	Pabpc4l	100	90.000	ENSMAUG00000016313	Pabpc4l	100	88.649	Mesocricetus_auratus
MGP_PahariEiJ_G0026409	Pabpc4l	100	80.541	ENSMICG00000029683	PABPC4L	100	80.541	Microcebus_murinus
MGP_PahariEiJ_G0026409	Pabpc4l	100	89.730	ENSMOCG00000007551	Pabpc4l	100	89.730	Microtus_ochrogaster
MGP_PahariEiJ_G0026409	Pabpc4l	100	98.378	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	98.378	Mus_caroli
MGP_PahariEiJ_G0026409	Pabpc4l	100	98.649	ENSMUSG00000090919	Pabpc4l	100	98.649	Mus_musculus
MGP_PahariEiJ_G0026409	Pabpc4l	100	98.108	MGP_SPRETEiJ_G0025903	Pabpc4l	100	98.108	Mus_spretus
MGP_PahariEiJ_G0026409	Pabpc4l	100	76.744	ENSMLUG00000008254	PABPC4L	99	76.744	Myotis_lucifugus
MGP_PahariEiJ_G0026409	Pabpc4l	100	85.676	ENSNGAG00000001502	Pabpc4l	100	85.676	Nannospalax_galili
MGP_PahariEiJ_G0026409	Pabpc4l	100	81.395	ENSNLEG00000019300	PABPC4L	100	81.351	Nomascus_leucogenys
MGP_PahariEiJ_G0026409	Pabpc4l	100	76.000	ENSOGAG00000026166	PABPC4L	100	74.595	Otolemur_garnettii
MGP_PahariEiJ_G0026409	Pabpc4l	100	81.395	ENSPPAG00000043745	PABPC4L	93	81.395	Pan_paniscus
MGP_PahariEiJ_G0026409	Pabpc4l	100	78.000	ENSPPRG00000018628	PABPC4L	99	78.591	Panthera_pardus
MGP_PahariEiJ_G0026409	Pabpc4l	100	78.000	ENSPTIG00000010106	PABPC4L	99	78.862	Panthera_tigris_altaica
MGP_PahariEiJ_G0026409	Pabpc4l	100	81.395	ENSPTRG00000045513	-	78	81.115	Pan_troglodytes
MGP_PahariEiJ_G0026409	Pabpc4l	100	89.459	ENSPEMG00000012565	Pabpc4l	100	89.459	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0026409	Pabpc4l	100	81.081	ENSPCOG00000025578	PABPC4L	100	81.081	Propithecus_coquereli
MGP_PahariEiJ_G0026409	Pabpc4l	100	93.784	ENSRNOG00000029749	Pabpc4l	100	93.784	Rattus_norvegicus
MGP_PahariEiJ_G0026409	Pabpc4l	100	81.395	ENSRBIG00000030229	PABPC4L	99	81.395	Rhinopithecus_bieti
MGP_PahariEiJ_G0026409	Pabpc4l	100	81.395	ENSRROG00000020367	PABPC4L	99	81.395	Rhinopithecus_roxellana
MGP_PahariEiJ_G0026409	Pabpc4l	100	80.811	ENSSBOG00000016382	PABPC4L	100	80.811	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0026409	Pabpc4l	100	78.000	ENSSSCG00000009067	PABPC4L	99	73.442	Sus_scrofa
MGP_PahariEiJ_G0026409	Pabpc4l	100	78.488	ENSUAMG00000001289	PABPC4L	99	78.591	Ursus_americanus
MGP_PahariEiJ_G0026409	Pabpc4l	100	78.488	ENSUMAG00000014887	PABPC4L	99	78.591	Ursus_maritimus
MGP_PahariEiJ_G0026409	Pabpc4l	100	70.000	ENSVVUG00000011060	-	75	67.683	Vulpes_vulpes