EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0026809 (Gene tree)
Gene ID: 110320043
Gene Symbol: Sf3b4
Alias: 49kDa|SF3b49|Sap49
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 5009 bases
Position: chr4:86374800-86379808
Accession: 110320043
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0070261	RRM_1	PF00076.22	5.3e-39	1	2
MGP_PahariEiJ_P0070261	RRM_1	PF00076.22	5.3e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0070262	-	402	-	-	- (aa)	-	-
MGP_PahariEiJ_T0070261	-	1913	-	MGP_PahariEiJ_P0070261	424 (aa)	XP_021051559	UPI000002932B

Gene Model

Click here to download MGP_PahariEiJ_G0026809's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0026809's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0026809	Sf3b4	75	35.028	MGP_PahariEiJ_G0026071	Pabpc1l	60	35.057
MGP_PahariEiJ_G0026809	Sf3b4	65	38.068	MGP_PahariEiJ_G0018950	Pabpc2	58	38.068
MGP_PahariEiJ_G0026809	Sf3b4	54	37.500	MGP_PahariEiJ_G0026409	Pabpc4l	96	37.500
MGP_PahariEiJ_G0026809	Sf3b4	70	39.344	MGP_PahariEiJ_G0019749	Pabpc1	57	39.344

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSG00000143368	SF3B4	100	100.000	Homo_sapiens
MGP_PahariEiJ_G0026809	Sf3b4	57	96.667	ENSAPOG00000017647	sf3b4	60	96.667	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSAMEG00000010073	SF3B4	100	99.764	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0026809	Sf3b4	57	96.667	ENSAOCG00000019801	sf3b4	60	96.667	Amphiprion_ocellaris
MGP_PahariEiJ_G0026809	Sf3b4	57	96.667	ENSAPEG00000010365	sf3b4	60	96.667	Amphiprion_percula
MGP_PahariEiJ_G0026809	Sf3b4	57	96.250	ENSATEG00000012844	sf3b4	60	96.250	Anabas_testudineus
MGP_PahariEiJ_G0026809	Sf3b4	62	96.198	ENSACAG00000010019	SF3B4	90	89.817	Anolis_carolinensis
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSANAG00000031025	SF3B4	100	99.528	Aotus_nancymaae
MGP_PahariEiJ_G0026809	Sf3b4	57	95.833	ENSACLG00000014260	sf3b4	60	95.833	Astatotilapia_calliptera
MGP_PahariEiJ_G0026809	Sf3b4	57	96.250	ENSAMXG00000008282	sf3b4	60	96.250	Astyanax_mexicanus
MGP_PahariEiJ_G0026809	Sf3b4	91	96.354	ENSBTAG00000012793	-	93	96.354	Bos_taurus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSBTAG00000012495	SF3B4	100	99.764	Bos_taurus
MGP_PahariEiJ_G0026809	Sf3b4	90	81.787	ENSCJAG00000042351	SF3B4	87	81.787	Callithrix_jacchus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.292	ENSCAFG00000011617	SF3B4	100	99.292	Canis_familiaris
MGP_PahariEiJ_G0026809	Sf3b4	100	99.292	ENSCAFG00020019775	SF3B4	100	99.292	Canis_lupus_dingo
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSCHIG00000025663	-	100	99.764	Capra_hircus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSTSYG00000009295	SF3B4	100	99.528	Carlito_syrichta
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSCPOG00000008267	SF3B4	100	99.528	Cavia_porcellus
MGP_PahariEiJ_G0026809	Sf3b4	100	86.768	ENSCCAG00000021751	-	69	92.593	Cebus_capucinus
MGP_PahariEiJ_G0026809	Sf3b4	95	85.323	ENSCCAG00000019823	-	77	86.196	Cebus_capucinus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSCATG00000033114	SF3B4	100	99.528	Cercocebus_atys
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSCLAG00000015851	SF3B4	100	99.528	Chinchilla_lanigera
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSCSAG00000018129	SF3B4	100	99.528	Chlorocebus_sabaeus
MGP_PahariEiJ_G0026809	Sf3b4	99	85.849	ENSCPBG00000008041	SF3B4	91	90.625	Chrysemys_picta_bellii
MGP_PahariEiJ_G0026809	Sf3b4	51	90.698	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSCANG00000035579	SF3B4	100	99.528	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0026809	Sf3b4	100	100.000	ENSCGRG00001003590	Sf3b4	100	100.000	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0026809	Sf3b4	100	100.000	ENSCGRG00000016914	Sf3b4	100	100.000	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0026809	Sf3b4	57	96.250	ENSDARG00000018574	sf3b4	60	96.250	Danio_rerio
MGP_PahariEiJ_G0026809	Sf3b4	97	80.872	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
MGP_PahariEiJ_G0026809	Sf3b4	98	96.875	ENSDNOG00000048908	-	99	96.875	Dasypus_novemcinctus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSDORG00000016366	Sf3b4	100	99.764	Dipodomys_ordii
MGP_PahariEiJ_G0026809	Sf3b4	52	86.425	FBgn0015818	Spx	61	88.152	Drosophila_melanogaster
MGP_PahariEiJ_G0026809	Sf3b4	76	92.593	ENSETEG00000008963	SF3B4	76	92.593	Echinops_telfairi
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSEASG00005001477	SF3B4	100	99.764	Equus_asinus_asinus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSECAG00000024737	SF3B4	100	99.764	Equus_caballus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSFCAG00000010106	SF3B4	100	99.764	Felis_catus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSFDAG00000009286	SF3B4	100	99.528	Fukomys_damarensis
MGP_PahariEiJ_G0026809	Sf3b4	54	96.957	ENSGMOG00000002519	sf3b4	67	97.368	Gadus_morhua
MGP_PahariEiJ_G0026809	Sf3b4	99	89.362	ENSGALG00000013352	SF3B4	90	89.817	Gallus_gallus
MGP_PahariEiJ_G0026809	Sf3b4	63	92.453	ENSGAFG00000010181	sf3b4	58	97.807	Gambusia_affinis
MGP_PahariEiJ_G0026809	Sf3b4	99	85.613	ENSGAGG00000025055	SF3B4	79	90.365	Gopherus_agassizii
MGP_PahariEiJ_G0026809	Sf3b4	100	73.349	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSGGOG00000004761	SF3B4	100	99.528	Gorilla_gorilla
MGP_PahariEiJ_G0026809	Sf3b4	57	95.833	ENSHBUG00000002028	sf3b4	60	95.833	Haplochromis_burtoni
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSHGLG00000012360	SF3B4	100	99.528	Heterocephalus_glaber_female
MGP_PahariEiJ_G0026809	Sf3b4	100	98.585	ENSHGLG00100008533	SF3B4	100	98.585	Heterocephalus_glaber_male
MGP_PahariEiJ_G0026809	Sf3b4	57	96.667	ENSIPUG00000012242	Sf3b4	60	96.667	Ictalurus_punctatus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSSTOG00000000684	-	100	99.764	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0026809	Sf3b4	76	84.914	ENSJJAG00000022500	Sf3b4	95	85.281	Jaculus_jaculus
MGP_PahariEiJ_G0026809	Sf3b4	56	96.203	ENSKMAG00000008154	sf3b4	58	98.246	Kryptolebias_marmoratus
MGP_PahariEiJ_G0026809	Sf3b4	55	97.425	ENSLBEG00000026818	sf3b4	57	98.246	Labrus_bergylta
MGP_PahariEiJ_G0026809	Sf3b4	57	95.473	ENSLACG00000004436	SF3B4	67	95.473	Latimeria_chalumnae
MGP_PahariEiJ_G0026809	Sf3b4	57	95.885	ENSLOCG00000009048	sf3b4	75	85.580	Lepisosteus_oculatus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.294	ENSLAFG00000008531	SF3B4	100	99.294	Loxodonta_africana
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSMFAG00000042395	SF3B4	100	99.528	Macaca_fascicularis
MGP_PahariEiJ_G0026809	Sf3b4	92	71.066	ENSMFAG00000039067	-	57	80.930	Macaca_fascicularis
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSMMUG00000007256	SF3B4	100	99.528	Macaca_mulatta
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSMNEG00000031839	SF3B4	100	99.528	Macaca_nemestrina
MGP_PahariEiJ_G0026809	Sf3b4	92	70.558	ENSMNEG00000031526	-	57	80.465	Macaca_nemestrina
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSMLEG00000038667	SF3B4	100	99.528	Mandrillus_leucophaeus
MGP_PahariEiJ_G0026809	Sf3b4	57	97.083	ENSMAMG00000014692	sf3b4	60	97.083	Mastacembelus_armatus
MGP_PahariEiJ_G0026809	Sf3b4	57	95.833	ENSMZEG00005026741	sf3b4	60	95.833	Maylandia_zebra
MGP_PahariEiJ_G0026809	Sf3b4	99	87.943	ENSMGAG00000000653	SF3B4	91	87.990	Meleagris_gallopavo
MGP_PahariEiJ_G0026809	Sf3b4	100	100.000	ENSMAUG00000015266	Sf3b4	100	100.000	Mesocricetus_auratus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSMICG00000044961	SF3B4	100	99.764	Microcebus_murinus
MGP_PahariEiJ_G0026809	Sf3b4	98	94.940	ENSMOCG00000014155	-	100	94.940	Microtus_ochrogaster
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSMOCG00000013658	-	100	99.764	Microtus_ochrogaster
MGP_PahariEiJ_G0026809	Sf3b4	54	97.826	ENSMMOG00000018032	sf3b4	58	97.807	Mola_mola
MGP_PahariEiJ_G0026809	Sf3b4	100	99.057	ENSMODG00000018767	SF3B4	100	99.057	Monodelphis_domestica
MGP_PahariEiJ_G0026809	Sf3b4	54	97.797	ENSMALG00000006174	sf3b4	57	97.368	Monopterus_albus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	MGP_CAROLIEiJ_G0025365	Sf3b4	100	99.764	Mus_caroli
MGP_PahariEiJ_G0026809	Sf3b4	100	100.000	ENSMUSG00000068856	Sf3b4	100	100.000	Mus_musculus
MGP_PahariEiJ_G0026809	Sf3b4	100	100.000	MGP_SPRETEiJ_G0026309	Sf3b4	100	100.000	Mus_spretus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSMPUG00000005563	SF3B4	100	99.764	Mustela_putorius_furo
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSMLUG00000010789	SF3B4	100	99.528	Myotis_lucifugus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSNGAG00000016337	Sf3b4	100	99.764	Nannospalax_galili
MGP_PahariEiJ_G0026809	Sf3b4	57	96.250	ENSNBRG00000013865	sf3b4	60	96.250	Neolamprologus_brichardi
MGP_PahariEiJ_G0026809	Sf3b4	100	69.860	ENSNLEG00000009693	-	100	69.860	Nomascus_leucogenys
MGP_PahariEiJ_G0026809	Sf3b4	100	76.415	ENSNLEG00000000537	-	60	90.678	Nomascus_leucogenys
MGP_PahariEiJ_G0026809	Sf3b4	81	100.000	ENSMEUG00000003272	SF3B4	82	100.000	Notamacropus_eugenii
MGP_PahariEiJ_G0026809	Sf3b4	99	97.625	ENSOPRG00000010808	SF3B4	99	97.625	Ochotona_princeps
MGP_PahariEiJ_G0026809	Sf3b4	75	86.751	ENSODEG00000003597	-	79	86.751	Octodon_degus
MGP_PahariEiJ_G0026809	Sf3b4	56	95.359	ENSONIG00000002730	sf3b4	57	97.807	Oreochromis_niloticus
MGP_PahariEiJ_G0026809	Sf3b4	99	58.372	ENSOANG00000004768	-	50	81.776	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSOCUG00000004614	SF3B4	100	99.764	Oryctolagus_cuniculus
MGP_PahariEiJ_G0026809	Sf3b4	55	96.983	ENSORLG00000003062	sf3b4	59	97.807	Oryzias_latipes
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSOGAG00000006265	SF3B4	100	99.764	Otolemur_garnettii
MGP_PahariEiJ_G0026809	Sf3b4	86	78.571	ENSOARG00000007368	-	55	83.482	Ovis_aries
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSOARG00000020718	-	100	99.764	Ovis_aries
MGP_PahariEiJ_G0026809	Sf3b4	100	81.604	ENSPPAG00000030024	-	58	89.831	Pan_paniscus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSPPAG00000040904	SF3B4	100	99.528	Pan_paniscus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSPPRG00000007384	SF3B4	100	99.764	Panthera_pardus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.292	ENSPTIG00000014530	SF3B4	100	99.292	Panthera_tigris_altaica
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSPTRG00000001243	SF3B4	100	99.528	Pan_troglodytes
MGP_PahariEiJ_G0026809	Sf3b4	100	79.009	ENSPTRG00000049727	-	59	90.254	Pan_troglodytes
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSPANG00000005126	SF3B4	100	99.528	Papio_anubis
MGP_PahariEiJ_G0026809	Sf3b4	55	97.425	ENSPKIG00000020669	sf3b4	60	98.246	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0026809	Sf3b4	66	75.714	ENSPSIG00000009565	SF3B4	68	98.378	Pelodiscus_sinensis
MGP_PahariEiJ_G0026809	Sf3b4	100	100.000	ENSPEMG00000017568	Sf3b4	100	100.000	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0026809	Sf3b4	61	88.716	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.057	ENSPCIG00000008765	SF3B4	100	99.057	Phascolarctos_cinereus
MGP_PahariEiJ_G0026809	Sf3b4	64	90.476	ENSPFOG00000005754	sf3b4	58	97.368	Poecilia_formosa
MGP_PahariEiJ_G0026809	Sf3b4	64	90.476	ENSPLAG00000001401	sf3b4	63	97.368	Poecilia_latipinna
MGP_PahariEiJ_G0026809	Sf3b4	64	90.476	ENSPREG00000011076	sf3b4	57	97.807	Poecilia_reticulata
MGP_PahariEiJ_G0026809	Sf3b4	63	96.635	ENSPCAG00000000392	SF3B4	63	96.635	Procavia_capensis
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSPCOG00000015399	SF3B4	100	99.764	Propithecus_coquereli
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSPVAG00000014171	SF3B4	100	99.764	Pteropus_vampyrus
MGP_PahariEiJ_G0026809	Sf3b4	57	95.833	ENSPNYG00000012700	sf3b4	60	95.833	Pundamilia_nyererei
MGP_PahariEiJ_G0026809	Sf3b4	57	96.667	ENSPNAG00000000686	sf3b4	61	96.667	Pygocentrus_nattereri
MGP_PahariEiJ_G0026809	Sf3b4	100	100.000	ENSRNOG00000021181	Sf3b4	100	100.000	Rattus_norvegicus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSRBIG00000043392	SF3B4	100	99.528	Rhinopithecus_bieti
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSRROG00000029366	SF3B4	100	99.528	Rhinopithecus_roxellana
MGP_PahariEiJ_G0026809	Sf3b4	92	71.208	ENSRROG00000028213	-	56	76.364	Rhinopithecus_roxellana
MGP_PahariEiJ_G0026809	Sf3b4	100	99.292	ENSSBOG00000012310	-	100	99.292	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0026809	Sf3b4	100	96.462	ENSSHAG00000004043	SF3B4	100	98.688	Sarcophilus_harrisii
MGP_PahariEiJ_G0026809	Sf3b4	56	96.624	ENSSFOG00015008864	sf3b4	56	98.246	Scleropages_formosus
MGP_PahariEiJ_G0026809	Sf3b4	57	96.667	ENSSMAG00000006837	sf3b4	60	96.667	Scophthalmus_maximus
MGP_PahariEiJ_G0026809	Sf3b4	57	97.083	ENSSDUG00000012064	sf3b4	60	97.083	Seriola_dumerili
MGP_PahariEiJ_G0026809	Sf3b4	57	97.083	ENSSLDG00000014226	sf3b4	60	97.083	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0026809	Sf3b4	72	95.102	ENSSPUG00000001028	SF3B4	57	98.684	Sphenodon_punctatus
MGP_PahariEiJ_G0026809	Sf3b4	57	97.500	ENSSPAG00000019219	sf3b4	60	97.500	Stegastes_partitus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	ENSSSCG00000006665	-	100	99.528	Sus_scrofa
MGP_PahariEiJ_G0026809	Sf3b4	85	66.022	ENSSSCG00000039440	-	58	87.097	Sus_scrofa
MGP_PahariEiJ_G0026809	Sf3b4	56	97.034	ENSTGUG00000004470	SF3B4	90	98.246	Taeniopygia_guttata
MGP_PahariEiJ_G0026809	Sf3b4	54	96.916	ENSTRUG00000004516	sf3b4	57	96.491	Takifugu_rubripes
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSTTRG00000005217	SF3B4	100	99.764	Tursiops_truncatus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	ENSUAMG00000022468	SF3B4	100	99.764	Ursus_americanus
MGP_PahariEiJ_G0026809	Sf3b4	100	99.292	ENSUMAG00000003802	SF3B4	100	99.292	Ursus_maritimus
MGP_PahariEiJ_G0026809	Sf3b4	97	99.757	ENSVPAG00000008152	SF3B4	100	99.757	Vicugna_pacos
MGP_PahariEiJ_G0026809	Sf3b4	99	92.584	ENSVVUG00000007732	-	100	92.584	Vulpes_vulpes
MGP_PahariEiJ_G0026809	Sf3b4	61	96.899	ENSVVUG00000022697	-	54	96.899	Vulpes_vulpes
MGP_PahariEiJ_G0026809	Sf3b4	54	97.391	ENSXCOG00000019895	sf3b4	58	97.807	Xiphophorus_couchianus
MGP_PahariEiJ_G0026809	Sf3b4	54	97.391	ENSXMAG00000003772	sf3b4	58	97.807	Xiphophorus_maculatus