EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0026988 (Gene tree)
Gene ID: 110320446
Gene Symbol: Prpf38b
Alias: 1110021E09Rik
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 8966 bases
Position: chr4:98530840-98539805
Accession: 110320446
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0070966	PRP38	PF03371.15	2.8e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0070972	-	3802	-	-	- (aa)	-	-
MGP_PahariEiJ_T0070970	-	531	-	-	- (aa)	-	-
MGP_PahariEiJ_T0070971	-	2101	-	-	- (aa)	-	-
MGP_PahariEiJ_T0070965	-	3032	-	MGP_PahariEiJ_P0070965	94 (aa)	-	UPI000620AA44
MGP_PahariEiJ_T0070967	-	2513	-	MGP_PahariEiJ_P0070967	182 (aa)	-	-
MGP_PahariEiJ_T0070966	-	3008	-	MGP_PahariEiJ_P0070966	544 (aa)	XP_021052135	UPI000A3096C1
MGP_PahariEiJ_T0070969	-	556	-	-	- (aa)	-	-
MGP_PahariEiJ_T0070968	-	974	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0026988's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0026988's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0026988	Prpf38b	99	96.774	ENSG00000134186	PRPF38B	100	96.335	Homo_sapiens
MGP_PahariEiJ_G0026988	Prpf38b	99	96.774	ENSANAG00000028333	PRPF38B	100	96.335	Aotus_nancymaae
MGP_PahariEiJ_G0026988	Prpf38b	100	96.161	ENSCGRG00001018841	Prpf38b	100	96.161	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0026988	Prpf38b	83	96.239	ENSCGRG00000002972	Prpf38b	100	96.239	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0026988	Prpf38b	79	89.862	ENSDORG00000025236	-	97	90.000	Dipodomys_ordii
MGP_PahariEiJ_G0026988	Prpf38b	53	88.000	ENSEBUG00000001683	-	58	73.034	Eptatretus_burgeri
MGP_PahariEiJ_G0026988	Prpf38b	99	94.624	ENSEEUG00000014328	PRPF38B	100	90.659	Erinaceus_europaeus
MGP_PahariEiJ_G0026988	Prpf38b	100	90.494	ENSFDAG00000021009	PRPF38B	100	90.494	Fukomys_damarensis
MGP_PahariEiJ_G0026988	Prpf38b	99	96.774	ENSGGOG00000011288	PRPF38B	100	96.335	Gorilla_gorilla
MGP_PahariEiJ_G0026988	Prpf38b	91	86.546	ENSMGAG00000006188	PRPF38B	100	84.940	Meleagris_gallopavo
MGP_PahariEiJ_G0026988	Prpf38b	99	98.925	ENSMAUG00000019131	Prpf38b	100	95.963	Mesocricetus_auratus
MGP_PahariEiJ_G0026988	Prpf38b	100	98.936	MGP_CAROLIEiJ_G0025542	Prpf38b	100	98.936	Mus_caroli
MGP_PahariEiJ_G0026988	Prpf38b	100	100.000	ENSMUSG00000027881	Prpf38b	100	100.000	Mus_musculus
MGP_PahariEiJ_G0026988	Prpf38b	100	100.000	MGP_SPRETEiJ_G0026492	Prpf38b	100	100.000	Mus_spretus
MGP_PahariEiJ_G0026988	Prpf38b	100	88.117	ENSNLEG00000030268	-	100	84.826	Nomascus_leucogenys
MGP_PahariEiJ_G0026988	Prpf38b	99	96.774	ENSNLEG00000001645	-	100	96.335	Nomascus_leucogenys
MGP_PahariEiJ_G0026988	Prpf38b	99	96.774	ENSPPAG00000001260	PRPF38B	100	96.335	Pan_paniscus
MGP_PahariEiJ_G0026988	Prpf38b	99	94.737	ENSPPRG00000002116	PRPF38B	98	97.354	Panthera_pardus
MGP_PahariEiJ_G0026988	Prpf38b	99	96.774	ENSPTRG00000001032	PRPF38B	100	96.335	Pan_troglodytes
MGP_PahariEiJ_G0026988	Prpf38b	99	97.849	ENSPANG00000007560	PRPF38B	100	96.859	Papio_anubis
MGP_PahariEiJ_G0026988	Prpf38b	99	77.083	ENSPCIG00000024841	PRPF38B	100	87.455	Phascolarctos_cinereus
MGP_PahariEiJ_G0026988	Prpf38b	99	94.737	ENSPVAG00000011929	-	100	91.971	Pteropus_vampyrus
MGP_PahariEiJ_G0026988	Prpf38b	100	92.754	ENSSARG00000012818	-	100	91.818	Sorex_araneus
MGP_PahariEiJ_G0026988	Prpf38b	99	73.958	ENSTGUG00000004594	-	71	88.110	Taeniopygia_guttata
MGP_PahariEiJ_G0026988	Prpf38b	99	96.809	ENSUAMG00000023817	PRPF38B	100	89.617	Ursus_americanus