EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0027001 (Gene tree)
Gene ID: 110320986
Gene Symbol: Rnpc3
Alias: 2810441O16Rik|C030014B17Rik
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 25845 bases
Position: chr4:102512619-102538463
Accession: 110320986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0071017	RRM_1	PF00076.22	8.8e-19	1	2
MGP_PahariEiJ_P0071017	RRM_1	PF00076.22	8.8e-19	2	2
MGP_PahariEiJ_P0071019	RRM_1	PF00076.22	9.2e-19	1	2
MGP_PahariEiJ_P0071019	RRM_1	PF00076.22	9.2e-19	2	2
MGP_PahariEiJ_P0071016	RRM_1	PF00076.22	9.2e-19	1	2
MGP_PahariEiJ_P0071016	RRM_1	PF00076.22	9.2e-19	2	2
MGP_PahariEiJ_P0071018	RRM_1	PF00076.22	9.2e-19	1	2
MGP_PahariEiJ_P0071018	RRM_1	PF00076.22	9.2e-19	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0071018	-	1835	XM_021197062	MGP_PahariEiJ_P0071018	514 (aa)	XP_021052720	UPI000A304D58
MGP_PahariEiJ_T0071019	-	2616	-	MGP_PahariEiJ_P0071019	513 (aa)	-	-
MGP_PahariEiJ_T0071016	-	4107	-	MGP_PahariEiJ_P0071016	514 (aa)	XP_021052720	UPI000A304D58
MGP_PahariEiJ_T0071017	-	3469	-	MGP_PahariEiJ_P0071017	507 (aa)	-	-
MGP_PahariEiJ_T0071023	-	1344	-	-	- (aa)	-	-
MGP_PahariEiJ_T0071022	-	423	-	-	- (aa)	-	-
MGP_PahariEiJ_T0071021	-	671	-	-	- (aa)	-	-
MGP_PahariEiJ_T0071020	-	414	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0027001's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0027001's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0027001	Rnpc3	100	88.780	ENSG00000185946	RNPC3	100	91.304	Homo_sapiens
MGP_PahariEiJ_G0027001	Rnpc3	97	56.137	ENSAPOG00000017371	rnpc3	97	56.137	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0027001	Rnpc3	99	88.583	ENSAMEG00000001694	RNPC3	99	87.861	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0027001	Rnpc3	97	52.495	ENSACIG00000021043	rnpc3	98	52.495	Amphilophus_citrinellus
MGP_PahariEiJ_G0027001	Rnpc3	97	55.578	ENSAOCG00000014052	rnpc3	96	55.578	Amphiprion_ocellaris
MGP_PahariEiJ_G0027001	Rnpc3	97	55.378	ENSAPEG00000008739	rnpc3	96	55.378	Amphiprion_percula
MGP_PahariEiJ_G0027001	Rnpc3	97	54.257	ENSATEG00000021263	rnpc3	98	54.257	Anabas_testudineus
MGP_PahariEiJ_G0027001	Rnpc3	89	68.653	ENSAPLG00000015605	RNPC3	99	68.653	Anas_platyrhynchos
MGP_PahariEiJ_G0027001	Rnpc3	96	66.802	ENSACAG00000002029	RNPC3	96	67.400	Anolis_carolinensis
MGP_PahariEiJ_G0027001	Rnpc3	100	87.791	ENSANAG00000019950	RNPC3	99	87.791	Aotus_nancymaae
MGP_PahariEiJ_G0027001	Rnpc3	96	54.767	ENSACLG00000014702	rnpc3	96	54.767	Astatotilapia_calliptera
MGP_PahariEiJ_G0027001	Rnpc3	96	57.260	ENSAMXG00000033372	rnpc3	96	57.260	Astyanax_mexicanus
MGP_PahariEiJ_G0027001	Rnpc3	100	89.567	ENSBTAG00000019091	RNPC3	99	89.320	Bos_taurus
MGP_PahariEiJ_G0027001	Rnpc3	100	83.140	ENSCJAG00000035686	RNPC3	99	83.527	Callithrix_jacchus
MGP_PahariEiJ_G0027001	Rnpc3	100	87.814	ENSCAFG00000019972	RNPC3	99	87.814	Canis_familiaris
MGP_PahariEiJ_G0027001	Rnpc3	100	88.008	ENSCAFG00020011300	RNPC3	99	88.008	Canis_lupus_dingo
MGP_PahariEiJ_G0027001	Rnpc3	100	89.391	ENSCHIG00000020361	RNPC3	99	89.147	Capra_hircus
MGP_PahariEiJ_G0027001	Rnpc3	100	86.024	ENSTSYG00000030256	RNPC3	99	86.019	Carlito_syrichta
MGP_PahariEiJ_G0027001	Rnpc3	85	75.973	ENSCAPG00000013600	RNPC3	98	75.174	Cavia_aperea
MGP_PahariEiJ_G0027001	Rnpc3	100	87.819	ENSCPOG00000031638	RNPC3	99	87.209	Cavia_porcellus
MGP_PahariEiJ_G0027001	Rnpc3	100	87.984	ENSCCAG00000024301	RNPC3	99	87.984	Cebus_capucinus
MGP_PahariEiJ_G0027001	Rnpc3	99	88.189	ENSCATG00000002086	RNPC3	99	87.961	Cercocebus_atys
MGP_PahariEiJ_G0027001	Rnpc3	99	67.921	ENSCATG00000035930	-	98	66.272	Cercocebus_atys
MGP_PahariEiJ_G0027001	Rnpc3	100	84.449	ENSCLAG00000005169	RNPC3	99	83.883	Chinchilla_lanigera
MGP_PahariEiJ_G0027001	Rnpc3	99	87.992	ENSCSAG00000001519	RNPC3	99	87.767	Chlorocebus_sabaeus
MGP_PahariEiJ_G0027001	Rnpc3	99	68.442	ENSCPBG00000028311	RNPC3	99	67.437	Chrysemys_picta_bellii
MGP_PahariEiJ_G0027001	Rnpc3	96	37.647	ENSCING00000021276	-	100	38.323	Ciona_intestinalis
MGP_PahariEiJ_G0027001	Rnpc3	99	87.992	ENSCANG00000031444	RNPC3	99	87.767	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0027001	Rnpc3	100	93.701	ENSCGRG00001019276	Rnpc3	100	93.398	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0027001	Rnpc3	89	93.792	ENSCGRG00000000053	Rnpc3	100	93.792	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0027001	Rnpc3	96	54.675	ENSCSEG00000013475	rnpc3	96	54.675	Cynoglossus_semilaevis
MGP_PahariEiJ_G0027001	Rnpc3	97	53.922	ENSCVAG00000002645	rnpc3	99	53.606	Cyprinodon_variegatus
MGP_PahariEiJ_G0027001	Rnpc3	97	54.528	ENSDARG00000011247	rnpc3	94	60.920	Danio_rerio
MGP_PahariEiJ_G0027001	Rnpc3	100	86.417	ENSDNOG00000047498	-	99	86.019	Dasypus_novemcinctus
MGP_PahariEiJ_G0027001	Rnpc3	100	86.811	ENSDNOG00000044555	-	99	86.408	Dasypus_novemcinctus
MGP_PahariEiJ_G0027001	Rnpc3	100	87.230	ENSDORG00000027343	Rnpc3	99	87.209	Dipodomys_ordii
MGP_PahariEiJ_G0027001	Rnpc3	96	46.875	ENSEBUG00000002068	rnpc3	97	47.544	Eptatretus_burgeri
MGP_PahariEiJ_G0027001	Rnpc3	100	87.791	ENSEASG00005015957	RNPC3	99	87.791	Equus_asinus_asinus
MGP_PahariEiJ_G0027001	Rnpc3	100	87.984	ENSECAG00000021148	RNPC3	99	87.984	Equus_caballus
MGP_PahariEiJ_G0027001	Rnpc3	97	54.440	ENSELUG00000002264	rnpc3	97	53.143	Esox_lucius
MGP_PahariEiJ_G0027001	Rnpc3	100	88.178	ENSFCAG00000024312	RNPC3	99	88.178	Felis_catus
MGP_PahariEiJ_G0027001	Rnpc3	89	70.861	ENSFALG00000002580	RNPC3	99	71.154	Ficedula_albicollis
MGP_PahariEiJ_G0027001	Rnpc3	100	88.212	ENSFDAG00000019948	RNPC3	100	87.984	Fukomys_damarensis
MGP_PahariEiJ_G0027001	Rnpc3	96	50.713	ENSFHEG00000020647	rnpc3	96	50.000	Fundulus_heteroclitus
MGP_PahariEiJ_G0027001	Rnpc3	96	54.343	ENSGMOG00000019213	rnpc3	95	53.265	Gadus_morhua
MGP_PahariEiJ_G0027001	Rnpc3	99	69.109	ENSGALG00000005162	RNPC3	91	68.515	Gallus_gallus
MGP_PahariEiJ_G0027001	Rnpc3	97	53.175	ENSGAFG00000017236	rnpc3	98	53.346	Gambusia_affinis
MGP_PahariEiJ_G0027001	Rnpc3	96	55.010	ENSGACG00000002048	rnpc3	96	54.672	Gasterosteus_aculeatus
MGP_PahariEiJ_G0027001	Rnpc3	97	69.153	ENSGAGG00000008438	RNPC3	96	68.442	Gopherus_agassizii
MGP_PahariEiJ_G0027001	Rnpc3	99	73.861	ENSGGOG00000026201	-	99	73.190	Gorilla_gorilla
MGP_PahariEiJ_G0027001	Rnpc3	79	78.947	ENSHBUG00000015966	rnpc3	82	78.947	Haplochromis_burtoni
MGP_PahariEiJ_G0027001	Rnpc3	100	87.426	ENSHGLG00000001708	RNPC3	99	87.209	Heterocephalus_glaber_female
MGP_PahariEiJ_G0027001	Rnpc3	100	87.426	ENSHGLG00100003005	RNPC3	99	87.209	Heterocephalus_glaber_male
MGP_PahariEiJ_G0027001	Rnpc3	97	54.691	ENSHCOG00000017135	rnpc3	97	54.980	Hippocampus_comes
MGP_PahariEiJ_G0027001	Rnpc3	96	55.400	ENSIPUG00000002916	rnpc3	97	54.563	Ictalurus_punctatus
MGP_PahariEiJ_G0027001	Rnpc3	100	87.819	ENSSTOG00000025020	RNPC3	99	87.403	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0027001	Rnpc3	100	86.240	ENSJJAG00000010203	Rnpc3	100	87.016	Jaculus_jaculus
MGP_PahariEiJ_G0027001	Rnpc3	97	54.326	ENSKMAG00000017358	rnpc3	98	52.174	Kryptolebias_marmoratus
MGP_PahariEiJ_G0027001	Rnpc3	97	54.910	ENSLBEG00000024901	rnpc3	95	54.910	Labrus_bergylta
MGP_PahariEiJ_G0027001	Rnpc3	96	62.118	ENSLACG00000005720	RNPC3	90	61.866	Latimeria_chalumnae
MGP_PahariEiJ_G0027001	Rnpc3	97	58.215	ENSLOCG00000007986	rnpc3	97	59.838	Lepisosteus_oculatus
MGP_PahariEiJ_G0027001	Rnpc3	100	86.822	ENSLAFG00000032342	RNPC3	100	86.822	Loxodonta_africana
MGP_PahariEiJ_G0027001	Rnpc3	99	64.752	ENSMFAG00000002917	-	99	65.437	Macaca_fascicularis
MGP_PahariEiJ_G0027001	Rnpc3	99	87.992	ENSMFAG00000002004	RNPC3	99	87.767	Macaca_fascicularis
MGP_PahariEiJ_G0027001	Rnpc3	85	80.751	ENSMMUG00000002098	-	92	80.751	Macaca_mulatta
MGP_PahariEiJ_G0027001	Rnpc3	99	87.992	ENSMMUG00000018039	RNPC3	99	87.767	Macaca_mulatta
MGP_PahariEiJ_G0027001	Rnpc3	99	83.071	ENSMNEG00000033950	RNPC3	99	82.913	Macaca_nemestrina
MGP_PahariEiJ_G0027001	Rnpc3	99	60.277	ENSMNEG00000029209	-	98	64.229	Macaca_nemestrina
MGP_PahariEiJ_G0027001	Rnpc3	99	66.667	ENSMLEG00000034644	-	98	66.471	Mandrillus_leucophaeus
MGP_PahariEiJ_G0027001	Rnpc3	99	88.189	ENSMLEG00000033628	RNPC3	99	87.961	Mandrillus_leucophaeus
MGP_PahariEiJ_G0027001	Rnpc3	97	50.693	ENSMAMG00000007496	rnpc3	97	47.977	Mastacembelus_armatus
MGP_PahariEiJ_G0027001	Rnpc3	96	54.365	ENSMZEG00005020233	rnpc3	97	54.365	Maylandia_zebra
MGP_PahariEiJ_G0027001	Rnpc3	89	67.896	ENSMGAG00000006381	RNPC3	99	68.113	Meleagris_gallopavo
MGP_PahariEiJ_G0027001	Rnpc3	98	94.378	ENSMAUG00000001358	Rnpc3	100	93.786	Mesocricetus_auratus
MGP_PahariEiJ_G0027001	Rnpc3	100	89.194	ENSMICG00000029591	RNPC3	99	88.953	Microcebus_murinus
MGP_PahariEiJ_G0027001	Rnpc3	98	92.385	ENSMOCG00000013423	Rnpc3	100	91.876	Microtus_ochrogaster
MGP_PahariEiJ_G0027001	Rnpc3	96	51.829	ENSMMOG00000005309	rnpc3	97	50.398	Mola_mola
MGP_PahariEiJ_G0027001	Rnpc3	100	77.559	ENSMODG00000002946	RNPC3	99	77.559	Monodelphis_domestica
MGP_PahariEiJ_G0027001	Rnpc3	97	51.779	ENSMALG00000015471	rnpc3	99	51.663	Monopterus_albus
MGP_PahariEiJ_G0027001	Rnpc3	100	97.860	MGP_CAROLIEiJ_G0025555	Rnpc3	100	97.860	Mus_caroli
MGP_PahariEiJ_G0027001	Rnpc3	100	98.249	ENSMUSG00000027981	Rnpc3	100	98.249	Mus_musculus
MGP_PahariEiJ_G0027001	Rnpc3	100	98.054	MGP_SPRETEiJ_G0026505	Rnpc3	100	98.054	Mus_spretus
MGP_PahariEiJ_G0027001	Rnpc3	100	87.403	ENSMPUG00000007349	RNPC3	99	87.403	Mustela_putorius_furo
MGP_PahariEiJ_G0027001	Rnpc3	100	85.658	ENSMLUG00000028743	RNPC3	99	85.465	Myotis_lucifugus
MGP_PahariEiJ_G0027001	Rnpc3	100	91.159	ENSNGAG00000010939	Rnpc3	99	91.211	Nannospalax_galili
MGP_PahariEiJ_G0027001	Rnpc3	96	54.564	ENSNBRG00000012196	rnpc3	93	54.564	Neolamprologus_brichardi
MGP_PahariEiJ_G0027001	Rnpc3	100	88.583	ENSNLEG00000012013	RNPC3	99	88.350	Nomascus_leucogenys
MGP_PahariEiJ_G0027001	Rnpc3	100	84.660	ENSODEG00000007612	RNPC3	99	84.660	Octodon_degus
MGP_PahariEiJ_G0027001	Rnpc3	96	55.172	ENSONIG00000004770	rnpc3	99	55.375	Oreochromis_niloticus
MGP_PahariEiJ_G0027001	Rnpc3	91	74.409	ENSOANG00000008220	RNPC3	99	75.699	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0027001	Rnpc3	100	87.791	ENSOCUG00000004016	RNPC3	99	87.791	Oryctolagus_cuniculus
MGP_PahariEiJ_G0027001	Rnpc3	97	52.410	ENSORLG00000005694	rnpc3	97	53.707	Oryzias_latipes
MGP_PahariEiJ_G0027001	Rnpc3	97	53.012	ENSORLG00020005513	rnpc3	97	54.309	Oryzias_latipes_hni
MGP_PahariEiJ_G0027001	Rnpc3	97	53.024	ENSORLG00015002179	rnpc3	97	54.326	Oryzias_latipes_hsok
MGP_PahariEiJ_G0027001	Rnpc3	97	53.427	ENSOMEG00000017737	rnpc3	97	54.930	Oryzias_melastigma
MGP_PahariEiJ_G0027001	Rnpc3	100	88.178	ENSOGAG00000026182	RNPC3	99	88.178	Otolemur_garnettii
MGP_PahariEiJ_G0027001	Rnpc3	100	89.194	ENSOARG00000018719	RNPC3	99	88.953	Ovis_aries
MGP_PahariEiJ_G0027001	Rnpc3	99	75.644	ENSPPAG00000030278	-	99	74.951	Pan_paniscus
MGP_PahariEiJ_G0027001	Rnpc3	100	88.235	ENSPPAG00000037459	RNPC3	99	88.008	Pan_paniscus
MGP_PahariEiJ_G0027001	Rnpc3	100	88.178	ENSPPRG00000020246	RNPC3	99	88.178	Panthera_pardus
MGP_PahariEiJ_G0027001	Rnpc3	99	88.735	ENSPTIG00000009887	RNPC3	99	88.735	Panthera_tigris_altaica
MGP_PahariEiJ_G0027001	Rnpc3	100	88.409	ENSPTRG00000033902	RNPC3	99	88.178	Pan_troglodytes
MGP_PahariEiJ_G0027001	Rnpc3	99	73.715	ENSPTRG00000044227	-	98	73.715	Pan_troglodytes
MGP_PahariEiJ_G0027001	Rnpc3	99	88.363	ENSPANG00000012137	RNPC3	99	88.132	Papio_anubis
MGP_PahariEiJ_G0027001	Rnpc3	99	69.625	ENSPANG00000029957	-	99	66.601	Papio_anubis
MGP_PahariEiJ_G0027001	Rnpc3	95	53.455	ENSPKIG00000008828	rnpc3	95	50.294	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0027001	Rnpc3	64	68.182	ENSPSIG00000007396	RNPC3	99	66.269	Pelodiscus_sinensis
MGP_PahariEiJ_G0027001	Rnpc3	94	51.534	ENSPMGG00000011742	rnpc3	95	50.920	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0027001	Rnpc3	90	92.105	ENSPEMG00000020112	Rnpc3	100	92.905	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0027001	Rnpc3	98	45.315	ENSPMAG00000003778	rnpc3	98	45.143	Petromyzon_marinus
MGP_PahariEiJ_G0027001	Rnpc3	100	78.346	ENSPCIG00000004415	-	99	78.346	Phascolarctos_cinereus
MGP_PahariEiJ_G0027001	Rnpc3	97	53.386	ENSPFOG00000009895	rnpc3	97	53.386	Poecilia_formosa
MGP_PahariEiJ_G0027001	Rnpc3	97	53.386	ENSPLAG00000012023	rnpc3	97	53.386	Poecilia_latipinna
MGP_PahariEiJ_G0027001	Rnpc3	97	53.586	ENSPMEG00000003663	rnpc3	97	53.586	Poecilia_mexicana
MGP_PahariEiJ_G0027001	Rnpc3	97	52.767	ENSPREG00000010206	rnpc3	98	53.386	Poecilia_reticulata
MGP_PahariEiJ_G0027001	Rnpc3	84	84.309	ENSPPYG00000001102	RNPC3	99	84.101	Pongo_abelii
MGP_PahariEiJ_G0027001	Rnpc3	96	54.564	ENSPNYG00000020603	rnpc3	96	54.564	Pundamilia_nyererei
MGP_PahariEiJ_G0027001	Rnpc3	100	94.882	ENSRNOG00000017310	Rnpc3	100	94.563	Rattus_norvegicus
MGP_PahariEiJ_G0027001	Rnpc3	99	82.908	ENSRBIG00000043897	RNPC3	99	82.752	Rhinopithecus_bieti
MGP_PahariEiJ_G0027001	Rnpc3	99	88.583	ENSRROG00000032334	RNPC3	99	88.350	Rhinopithecus_roxellana
MGP_PahariEiJ_G0027001	Rnpc3	100	88.155	ENSSBOG00000024473	RNPC3	98	90.288	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0027001	Rnpc3	100	77.559	ENSSHAG00000011859	RNPC3	99	77.559	Sarcophilus_harrisii
MGP_PahariEiJ_G0027001	Rnpc3	97	59.237	ENSSFOG00015013055	rnpc3	99	55.664	Scleropages_formosus
MGP_PahariEiJ_G0027001	Rnpc3	97	51.881	ENSSMAG00000020346	rnpc3	97	50.680	Scophthalmus_maximus
MGP_PahariEiJ_G0027001	Rnpc3	96	54.125	ENSSDUG00000006600	rnpc3	96	54.125	Seriola_dumerili
MGP_PahariEiJ_G0027001	Rnpc3	96	54.125	ENSSLDG00000007979	rnpc3	96	54.125	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0027001	Rnpc3	98	64.128	ENSSPUG00000003872	-	93	64.128	Sphenodon_punctatus
MGP_PahariEiJ_G0027001	Rnpc3	96	68.763	ENSSPUG00000008539	-	96	68.056	Sphenodon_punctatus
MGP_PahariEiJ_G0027001	Rnpc3	97	55.332	ENSSPAG00000005633	rnpc3	97	55.936	Stegastes_partitus
MGP_PahariEiJ_G0027001	Rnpc3	100	86.811	ENSSSCG00000037254	RNPC3	99	86.408	Sus_scrofa
MGP_PahariEiJ_G0027001	Rnpc3	89	70.705	ENSTGUG00000004795	-	99	70.705	Taeniopygia_guttata
MGP_PahariEiJ_G0027001	Rnpc3	97	54.257	ENSTNIG00000018963	rnpc3	97	54.257	Tetraodon_nigroviridis
MGP_PahariEiJ_G0027001	Rnpc3	99	88.955	ENSUMAG00000007775	RNPC3	99	88.955	Ursus_maritimus
MGP_PahariEiJ_G0027001	Rnpc3	100	88.008	ENSVVUG00000000331	RNPC3	99	88.008	Vulpes_vulpes
MGP_PahariEiJ_G0027001	Rnpc3	99	49.216	ENSXETG00000025027	rnpc3	99	49.216	Xenopus_tropicalis
MGP_PahariEiJ_G0027001	Rnpc3	97	52.652	ENSXCOG00000005013	rnpc3	98	49.713	Xiphophorus_couchianus
MGP_PahariEiJ_G0027001	Rnpc3	97	52.871	ENSXMAG00000006495	rnpc3	98	53.150	Xiphophorus_maculatus