EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0027011 (Gene tree)
Gene ID: 110320070
Gene Symbol: Rtca
Alias: 2310009A18Rik|Rtcd1
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 20281 bases
Position: chr4:105200769-105221049
Accession: 110320070
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0071063	RTC	PF01137.21	3.9e-87	1	1
MGP_PahariEiJ_P0071066	RTC	PF01137.21	1.6e-23	1	1
MGP_PahariEiJ_P0071063	RTC_insert	PF05189.13	2.1e-25	1	1
MGP_PahariEiJ_P0071066	RTC_insert	PF05189.13	1.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0071063	-	1593	XM_021195956	MGP_PahariEiJ_P0071063	366 (aa)	XP_021051615	UPI000A311B87
MGP_PahariEiJ_T0071067	-	737	-	MGP_PahariEiJ_P0071067	113 (aa)	-	UPI0001611729
MGP_PahariEiJ_T0071066	-	712	-	MGP_PahariEiJ_P0071066	142 (aa)	-	-
MGP_PahariEiJ_T0071065	-	876	-	MGP_PahariEiJ_P0071065	52 (aa)	-	UPI000161172B
MGP_PahariEiJ_T0071064	-	625	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0027011's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0027011's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0027011	Rtca	100	90.984	ENSG00000137996	RTCA	100	93.878	Homo_sapiens
MGP_PahariEiJ_G0027011	Rtca	100	69.945	ENSAPOG00000001345	rtca	99	69.945	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0027011	Rtca	100	89.437	ENSAMEG00000008855	RTCA	100	90.335	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0027011	Rtca	100	70.423	ENSACIG00000019643	rtca	100	70.219	Amphilophus_citrinellus
MGP_PahariEiJ_G0027011	Rtca	100	69.945	ENSAOCG00000014979	rtca	99	69.945	Amphiprion_ocellaris
MGP_PahariEiJ_G0027011	Rtca	100	69.945	ENSAPEG00000006945	rtca	99	69.945	Amphiprion_percula
MGP_PahariEiJ_G0027011	Rtca	100	69.014	ENSATEG00000006315	rtca	100	68.033	Anabas_testudineus
MGP_PahariEiJ_G0027011	Rtca	100	83.099	ENSAPLG00000015430	RTCA	100	79.944	Anas_platyrhynchos
MGP_PahariEiJ_G0027011	Rtca	90	82.979	ENSACAG00000003290	RTCA	94	82.530	Anolis_carolinensis
MGP_PahariEiJ_G0027011	Rtca	100	90.710	ENSANAG00000025446	RTCA	100	90.710	Aotus_nancymaae
MGP_PahariEiJ_G0027011	Rtca	100	69.126	ENSACLG00000020770	rtca	99	69.126	Astatotilapia_calliptera
MGP_PahariEiJ_G0027011	Rtca	100	72.535	ENSAMXG00000043271	rtca	98	71.389	Astyanax_mexicanus
MGP_PahariEiJ_G0027011	Rtca	100	92.350	ENSBTAG00000006321	RTCA	100	92.350	Bos_taurus
MGP_PahariEiJ_G0027011	Rtca	100	90.710	ENSCJAG00000003398	RTCA	100	90.710	Callithrix_jacchus
MGP_PahariEiJ_G0027011	Rtca	100	91.530	ENSCAFG00000020010	RTCA	68	91.530	Canis_familiaris
MGP_PahariEiJ_G0027011	Rtca	100	91.530	ENSCAFG00020011528	RTCA	57	91.530	Canis_lupus_dingo
MGP_PahariEiJ_G0027011	Rtca	100	92.077	ENSCHIG00000018937	RTCA	100	92.077	Capra_hircus
MGP_PahariEiJ_G0027011	Rtca	100	90.984	ENSTSYG00000011305	RTCA	100	90.984	Carlito_syrichta
MGP_PahariEiJ_G0027011	Rtca	92	93.750	ENSCPOG00000009296	-	99	92.806	Cavia_porcellus
MGP_PahariEiJ_G0027011	Rtca	100	90.984	ENSCCAG00000021844	RTCA	100	90.984	Cebus_capucinus
MGP_PahariEiJ_G0027011	Rtca	100	90.141	ENSCATG00000019364	RTCA	100	90.291	Cercocebus_atys
MGP_PahariEiJ_G0027011	Rtca	100	90.141	ENSCLAG00000006125	RTCA	100	91.167	Chinchilla_lanigera
MGP_PahariEiJ_G0027011	Rtca	100	91.257	ENSCSAG00000001509	RTCA	100	91.257	Chlorocebus_sabaeus
MGP_PahariEiJ_G0027011	Rtca	100	90.710	ENSCHOG00000005211	RTCA	100	90.710	Choloepus_hoffmanni
MGP_PahariEiJ_G0027011	Rtca	100	82.514	ENSCPBG00000026658	RTCA	100	82.514	Chrysemys_picta_bellii
MGP_PahariEiJ_G0027011	Rtca	98	55.833	ENSCING00000007875	-	98	55.833	Ciona_intestinalis
MGP_PahariEiJ_G0027011	Rtca	98	54.167	ENSCSAVG00000007269	-	98	54.167	Ciona_savignyi
MGP_PahariEiJ_G0027011	Rtca	100	90.984	ENSCANG00000040106	RTCA	100	90.984	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0027011	Rtca	100	92.958	ENSCGRG00001013163	Rtca	85	95.167	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0027011	Rtca	92	100.000	ENSCGRG00001001848	-	83	95.050	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0027011	Rtca	92	100.000	ENSCGRG00000002803	-	87	87.611	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0027011	Rtca	100	68.310	ENSCSEG00000000530	rtca	96	68.611	Cynoglossus_semilaevis
MGP_PahariEiJ_G0027011	Rtca	92	66.667	ENSCVAG00000021809	rtca	100	58.197	Cyprinodon_variegatus
MGP_PahariEiJ_G0027011	Rtca	100	71.038	ENSDARG00000002215	rtca	100	71.038	Danio_rerio
MGP_PahariEiJ_G0027011	Rtca	100	90.164	ENSDNOG00000000456	RTCA	100	90.164	Dasypus_novemcinctus
MGP_PahariEiJ_G0027011	Rtca	100	94.262	ENSDORG00000005448	Rtca	100	94.262	Dipodomys_ordii
MGP_PahariEiJ_G0027011	Rtca	94	56.000	FBgn0025630	Rtca	98	39.106	Drosophila_melanogaster
MGP_PahariEiJ_G0027011	Rtca	96	60.360	ENSEBUG00000008556	rtca	97	55.932	Eptatretus_burgeri
MGP_PahariEiJ_G0027011	Rtca	100	90.845	ENSEASG00005015926	RTCA	100	90.437	Equus_asinus_asinus
MGP_PahariEiJ_G0027011	Rtca	100	90.845	ENSECAG00000019831	RTCA	100	90.437	Equus_caballus
MGP_PahariEiJ_G0027011	Rtca	92	97.917	ENSEEUG00000001165	RTCA	100	82.081	Erinaceus_europaeus
MGP_PahariEiJ_G0027011	Rtca	99	70.914	ENSELUG00000003741	rtca	99	70.914	Esox_lucius
MGP_PahariEiJ_G0027011	Rtca	100	91.803	ENSFCAG00000024460	RTCA	100	91.803	Felis_catus
MGP_PahariEiJ_G0027011	Rtca	100	82.394	ENSFALG00000002443	RTCA	91	82.059	Ficedula_albicollis
MGP_PahariEiJ_G0027011	Rtca	98	71.271	ENSFDAG00000016084	-	100	71.271	Fukomys_damarensis
MGP_PahariEiJ_G0027011	Rtca	100	90.437	ENSFDAG00000012070	-	100	90.437	Fukomys_damarensis
MGP_PahariEiJ_G0027011	Rtca	79	68.750	ENSFHEG00000002868	rtca	90	69.048	Fundulus_heteroclitus
MGP_PahariEiJ_G0027011	Rtca	100	68.310	ENSGMOG00000013264	rtca	100	68.306	Gadus_morhua
MGP_PahariEiJ_G0027011	Rtca	100	82.394	ENSGALG00000005277	RTCA	100	82.240	Gallus_gallus
MGP_PahariEiJ_G0027011	Rtca	100	69.672	ENSGAFG00000011853	rtca	99	69.672	Gambusia_affinis
MGP_PahariEiJ_G0027011	Rtca	100	68.852	ENSGACG00000013497	rtca	100	68.852	Gasterosteus_aculeatus
MGP_PahariEiJ_G0027011	Rtca	100	81.690	ENSGAGG00000023306	RTCA	100	82.935	Gopherus_agassizii
MGP_PahariEiJ_G0027011	Rtca	100	91.530	ENSGGOG00000009546	-	100	91.530	Gorilla_gorilla
MGP_PahariEiJ_G0027011	Rtca	100	90.164	ENSGGOG00000044018	-	100	90.164	Gorilla_gorilla
MGP_PahariEiJ_G0027011	Rtca	100	68.852	ENSHBUG00000002114	rtca	99	68.852	Haplochromis_burtoni
MGP_PahariEiJ_G0027011	Rtca	100	90.984	ENSHGLG00000002617	RTCA	100	90.984	Heterocephalus_glaber_female
MGP_PahariEiJ_G0027011	Rtca	100	90.984	ENSHGLG00100006056	RTCA	100	90.984	Heterocephalus_glaber_male
MGP_PahariEiJ_G0027011	Rtca	100	64.208	ENSHCOG00000020628	rtca	89	64.208	Hippocampus_comes
MGP_PahariEiJ_G0027011	Rtca	100	74.648	ENSIPUG00000024803	rtca	100	70.765	Ictalurus_punctatus
MGP_PahariEiJ_G0027011	Rtca	100	89.437	ENSSTOG00000013528	-	100	83.880	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0027011	Rtca	100	81.690	ENSSTOG00000033099	-	100	79.837	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0027011	Rtca	92	93.750	ENSJJAG00000016178	Rtca	100	67.213	Jaculus_jaculus
MGP_PahariEiJ_G0027011	Rtca	100	71.858	ENSKMAG00000006651	rtca	99	71.858	Kryptolebias_marmoratus
MGP_PahariEiJ_G0027011	Rtca	100	67.606	ENSLBEG00000002448	-	99	68.536	Labrus_bergylta
MGP_PahariEiJ_G0027011	Rtca	99	68.975	ENSLBEG00000028971	rtca	99	68.975	Labrus_bergylta
MGP_PahariEiJ_G0027011	Rtca	100	77.049	ENSLACG00000013666	RTCA	100	77.049	Latimeria_chalumnae
MGP_PahariEiJ_G0027011	Rtca	100	73.239	ENSLOCG00000000093	rtca	99	72.404	Lepisosteus_oculatus
MGP_PahariEiJ_G0027011	Rtca	100	90.984	ENSLAFG00000001473	RTCA	100	90.984	Loxodonta_africana
MGP_PahariEiJ_G0027011	Rtca	100	91.257	ENSMFAG00000034132	RTCA	100	91.257	Macaca_fascicularis
MGP_PahariEiJ_G0027011	Rtca	100	91.257	ENSMMUG00000019105	RTCA	100	91.257	Macaca_mulatta
MGP_PahariEiJ_G0027011	Rtca	100	90.141	ENSMNEG00000037163	RTCA	100	90.615	Macaca_nemestrina
MGP_PahariEiJ_G0027011	Rtca	100	90.141	ENSMLEG00000042151	RTCA	100	74.590	Mandrillus_leucophaeus
MGP_PahariEiJ_G0027011	Rtca	100	71.127	ENSMAMG00000016536	rtca	100	70.765	Mastacembelus_armatus
MGP_PahariEiJ_G0027011	Rtca	100	69.126	ENSMZEG00005017945	rtca	99	69.126	Maylandia_zebra
MGP_PahariEiJ_G0027011	Rtca	100	82.394	ENSMGAG00000006892	RTCA	99	81.191	Meleagris_gallopavo
MGP_PahariEiJ_G0027011	Rtca	100	96.175	ENSMAUG00000008488	Rtca	100	96.175	Mesocricetus_auratus
MGP_PahariEiJ_G0027011	Rtca	100	90.141	ENSMICG00000008643	RTCA	100	91.586	Microcebus_murinus
MGP_PahariEiJ_G0027011	Rtca	100	95.082	ENSMOCG00000016660	Rtca	100	95.082	Microtus_ochrogaster
MGP_PahariEiJ_G0027011	Rtca	100	71.831	ENSMMOG00000007750	rtca	100	70.874	Mola_mola
MGP_PahariEiJ_G0027011	Rtca	100	86.885	ENSMODG00000003557	RTCA	100	86.885	Monodelphis_domestica
MGP_PahariEiJ_G0027011	Rtca	100	71.127	ENSMALG00000020844	rtca	100	70.765	Monopterus_albus
MGP_PahariEiJ_G0027011	Rtca	100	100.000	MGP_CAROLIEiJ_G0025565	Rtca	100	100.000	Mus_caroli
MGP_PahariEiJ_G0027011	Rtca	100	100.000	ENSMUSG00000000339	Rtca	100	100.000	Mus_musculus
MGP_PahariEiJ_G0027011	Rtca	100	100.000	MGP_SPRETEiJ_G0026515	Rtca	100	100.000	Mus_spretus
MGP_PahariEiJ_G0027011	Rtca	100	91.530	ENSMPUG00000012119	RTCA	100	91.530	Mustela_putorius_furo
MGP_PahariEiJ_G0027011	Rtca	100	86.921	ENSMLUG00000009922	RTCA	100	86.921	Myotis_lucifugus
MGP_PahariEiJ_G0027011	Rtca	100	94.262	ENSNGAG00000011540	Rtca	99	94.262	Nannospalax_galili
MGP_PahariEiJ_G0027011	Rtca	100	69.126	ENSNBRG00000003062	rtca	99	69.126	Neolamprologus_brichardi
MGP_PahariEiJ_G0027011	Rtca	100	90.984	ENSNLEG00000031426	RTCA	100	90.984	Nomascus_leucogenys
MGP_PahariEiJ_G0027011	Rtca	92	93.750	ENSMEUG00000010030	-	77	72.727	Notamacropus_eugenii
MGP_PahariEiJ_G0027011	Rtca	100	92.958	ENSOPRG00000012092	RTCA	71	87.732	Ochotona_princeps
MGP_PahariEiJ_G0027011	Rtca	100	88.028	ENSODEG00000006990	RTCA	96	90.883	Octodon_degus
MGP_PahariEiJ_G0027011	Rtca	100	68.852	ENSONIG00000007753	rtca	99	68.852	Oreochromis_niloticus
MGP_PahariEiJ_G0027011	Rtca	100	84.507	ENSOANG00000012055	RTCA	98	83.912	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0027011	Rtca	92	100.000	ENSOCUG00000014247	RTCA	100	91.803	Oryctolagus_cuniculus
MGP_PahariEiJ_G0027011	Rtca	100	69.399	ENSORLG00000013605	rtca	100	69.399	Oryzias_latipes
MGP_PahariEiJ_G0027011	Rtca	100	69.399	ENSORLG00020001904	rtca	100	69.399	Oryzias_latipes_hni
MGP_PahariEiJ_G0027011	Rtca	100	69.672	ENSORLG00015021064	rtca	100	69.672	Oryzias_latipes_hsok
MGP_PahariEiJ_G0027011	Rtca	100	71.127	ENSOMEG00000000756	rtca	100	70.219	Oryzias_melastigma
MGP_PahariEiJ_G0027011	Rtca	94	95.918	ENSOGAG00000005627	RTCA	100	82.240	Otolemur_garnettii
MGP_PahariEiJ_G0027011	Rtca	100	88.732	ENSOARG00000018122	RTCA	100	90.881	Ovis_aries
MGP_PahariEiJ_G0027011	Rtca	100	90.141	ENSPPAG00000035119	RTCA	100	90.939	Pan_paniscus
MGP_PahariEiJ_G0027011	Rtca	100	91.530	ENSPPRG00000000350	RTCA	100	91.530	Panthera_pardus
MGP_PahariEiJ_G0027011	Rtca	100	91.530	ENSPTIG00000012816	RTCA	100	91.530	Panthera_tigris_altaica
MGP_PahariEiJ_G0027011	Rtca	100	90.141	ENSPTRG00000001004	RTCA	100	90.291	Pan_troglodytes
MGP_PahariEiJ_G0027011	Rtca	100	91.257	ENSPANG00000000346	RTCA	100	91.257	Papio_anubis
MGP_PahariEiJ_G0027011	Rtca	100	73.239	ENSPKIG00000001653	rtca	100	71.858	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0027011	Rtca	100	83.333	ENSPSIG00000011408	RTCA	100	83.333	Pelodiscus_sinensis
MGP_PahariEiJ_G0027011	Rtca	76	62.791	ENSPMGG00000022529	rtca	97	61.438	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0027011	Rtca	100	96.175	ENSPEMG00000018582	Rtca	100	96.175	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0027011	Rtca	100	61.972	ENSPMAG00000009110	rtca	99	58.197	Petromyzon_marinus
MGP_PahariEiJ_G0027011	Rtca	100	86.885	ENSPCIG00000007684	RTCA	100	86.885	Phascolarctos_cinereus
MGP_PahariEiJ_G0027011	Rtca	100	70.027	ENSPFOG00000004824	rtca	100	70.027	Poecilia_formosa
MGP_PahariEiJ_G0027011	Rtca	100	70.219	ENSPLAG00000011753	rtca	99	70.219	Poecilia_latipinna
MGP_PahariEiJ_G0027011	Rtca	100	70.219	ENSPMEG00000020469	rtca	99	70.219	Poecilia_mexicana
MGP_PahariEiJ_G0027011	Rtca	100	71.038	ENSPREG00000001365	rtca	99	71.038	Poecilia_reticulata
MGP_PahariEiJ_G0027011	Rtca	92	93.750	ENSPPYG00000029514	-	97	90.816	Pongo_abelii
MGP_PahariEiJ_G0027011	Rtca	100	90.984	ENSPPYG00000001115	RTCA	100	90.984	Pongo_abelii
MGP_PahariEiJ_G0027011	Rtca	100	90.141	ENSPCAG00000005076	RTCA	100	87.432	Procavia_capensis
MGP_PahariEiJ_G0027011	Rtca	100	96.154	ENSPCOG00000005603	RTCA	100	96.154	Propithecus_coquereli
MGP_PahariEiJ_G0027011	Rtca	94	97.959	ENSPVAG00000009478	RTCA	100	87.071	Pteropus_vampyrus
MGP_PahariEiJ_G0027011	Rtca	100	69.126	ENSPNYG00000004722	rtca	99	69.126	Pundamilia_nyererei
MGP_PahariEiJ_G0027011	Rtca	100	73.239	ENSPNAG00000022270	rtca	100	70.765	Pygocentrus_nattereri
MGP_PahariEiJ_G0027011	Rtca	100	98.087	ENSRNOG00000014575	Rtca	100	98.087	Rattus_norvegicus
MGP_PahariEiJ_G0027011	Rtca	100	88.732	ENSRBIG00000041180	RTCA	100	89.644	Rhinopithecus_bieti
MGP_PahariEiJ_G0027011	Rtca	100	90.437	ENSRROG00000024929	RTCA	100	90.437	Rhinopithecus_roxellana
MGP_PahariEiJ_G0027011	Rtca	100	90.845	ENSSBOG00000028626	RTCA	100	90.437	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0027011	Rtca	100	87.978	ENSSHAG00000001758	RTCA	100	87.978	Sarcophilus_harrisii
MGP_PahariEiJ_G0027011	Rtca	98	68.333	ENSSMAG00000014680	rtca	97	68.333	Scophthalmus_maximus
MGP_PahariEiJ_G0027011	Rtca	100	69.718	ENSSDUG00000015585	rtca	97	69.167	Seriola_dumerili
MGP_PahariEiJ_G0027011	Rtca	100	69.014	ENSSLDG00000018985	rtca	95	69.516	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0027011	Rtca	92	85.496	ENSSARG00000013993	RTCA	100	83.281	Sorex_araneus
MGP_PahariEiJ_G0027011	Rtca	92	85.417	ENSSPUG00000016262	-	88	86.331	Sphenodon_punctatus
MGP_PahariEiJ_G0027011	Rtca	100	68.852	ENSSPAG00000011938	rtca	99	68.852	Stegastes_partitus
MGP_PahariEiJ_G0027011	Rtca	100	92.623	ENSSSCG00000006865	RTCA	100	92.623	Sus_scrofa
MGP_PahariEiJ_G0027011	Rtca	100	83.099	ENSTGUG00000005154	RTCA	100	82.514	Taeniopygia_guttata
MGP_PahariEiJ_G0027011	Rtca	100	70.423	ENSTRUG00000008799	rtca	100	69.672	Takifugu_rubripes
MGP_PahariEiJ_G0027011	Rtca	84	63.158	ENSTRUG00000002431	-	95	66.892	Takifugu_rubripes
MGP_PahariEiJ_G0027011	Rtca	100	72.535	ENSTNIG00000004725	rtca	100	71.038	Tetraodon_nigroviridis
MGP_PahariEiJ_G0027011	Rtca	94	91.837	ENSTBEG00000000943	RTCA	82	65.546	Tupaia_belangeri
MGP_PahariEiJ_G0027011	Rtca	100	89.437	ENSTTRG00000015327	RTCA	100	88.127	Tursiops_truncatus
MGP_PahariEiJ_G0027011	Rtca	100	88.732	ENSUAMG00000017265	RTCA	96	89.443	Ursus_americanus
MGP_PahariEiJ_G0027011	Rtca	100	90.437	ENSUMAG00000007881	RTCA	100	90.437	Ursus_maritimus
MGP_PahariEiJ_G0027011	Rtca	100	90.141	ENSVPAG00000001039	RTCA	84	80.757	Vicugna_pacos
MGP_PahariEiJ_G0027011	Rtca	100	91.257	ENSVVUG00000022041	RTCA	68	91.257	Vulpes_vulpes
MGP_PahariEiJ_G0027011	Rtca	95	71.963	ENSXETG00000031661	RTCA	99	66.940	Xenopus_tropicalis
MGP_PahariEiJ_G0027011	Rtca	99	68.085	ENSXCOG00000008002	rtca	100	60.656	Xiphophorus_couchianus
MGP_PahariEiJ_G0027011	Rtca	100	69.672	ENSXMAG00000005482	rtca	99	69.672	Xiphophorus_maculatus