EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0027014 (Gene tree)
Gene ID: 110320352
Gene Symbol: Trmt13
Alias: 4631408H19Rik|A930028L21Rik|Ccdc76
Full Name: tRNA methyltransferase 13 homolog
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 33696 bases
Position: chr4:105286564-105320259
Accession: 110320352
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0071074	TRM13	PF05206.14	3.6e-93	1	1
MGP_PahariEiJ_P0071079	TRM13	PF05206.14	8.7e-18	1	1
MGP_PahariEiJ_P0071074	zf-U11-48K	PF05253.12	5.6e-09	1	1
MGP_PahariEiJ_P0071074	zf-TRM13_CCCH	PF11722.8	2.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0071081	-	639	-	-	- (aa)	-	-
MGP_PahariEiJ_T0071087	-	868	-	-	- (aa)	-	-
MGP_PahariEiJ_T0071086	-	253	-	-	- (aa)	-	-
MGP_PahariEiJ_T0071078	-	1966	-	-	- (aa)	-	-
MGP_PahariEiJ_T0071079	-	538	-	MGP_PahariEiJ_P0071079	179 (aa)	-	-
MGP_PahariEiJ_T0071074	-	3364	-	MGP_PahariEiJ_P0071074	481 (aa)	XP_021051967	UPI000A30C030
MGP_PahariEiJ_T0071075	-	1617	-	MGP_PahariEiJ_P0071075	292 (aa)	-	-
MGP_PahariEiJ_T0071076	-	1724	-	MGP_PahariEiJ_P0071076	176 (aa)	-	-
MGP_PahariEiJ_T0071077	-	865	-	-	- (aa)	-	-
MGP_PahariEiJ_T0071080	-	458	-	MGP_PahariEiJ_P0071080	63 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0027014's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0027014's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0027014	Trmt13	99	87.002	ENSG00000122435	TRMT13	99	87.002	Homo_sapiens
MGP_PahariEiJ_G0027014	Trmt13	83	67.308	ENSAPOG00000015131	trmt13	99	48.497	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0027014	Trmt13	93	91.566	ENSAMEG00000008917	TRMT13	99	84.906	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0027014	Trmt13	95	55.689	ENSACIG00000005804	trmt13	100	47.552	Amphilophus_citrinellus
MGP_PahariEiJ_G0027014	Trmt13	83	67.308	ENSAOCG00000023585	trmt13	99	48.297	Amphiprion_ocellaris
MGP_PahariEiJ_G0027014	Trmt13	83	67.308	ENSAPEG00000004025	trmt13	99	48.611	Amphiprion_percula
MGP_PahariEiJ_G0027014	Trmt13	78	75.510	ENSATEG00000006597	trmt13	100	50.813	Anabas_testudineus
MGP_PahariEiJ_G0027014	Trmt13	93	72.289	ENSAPLG00000014924	TRMT13	99	66.667	Anas_platyrhynchos
MGP_PahariEiJ_G0027014	Trmt13	81	80.392	ENSACAG00000003498	TRMT13	99	62.527	Anolis_carolinensis
MGP_PahariEiJ_G0027014	Trmt13	99	87.002	ENSANAG00000019525	TRMT13	99	87.963	Aotus_nancymaae
MGP_PahariEiJ_G0027014	Trmt13	93	58.721	ENSACLG00000020018	trmt13	99	53.277	Astatotilapia_calliptera
MGP_PahariEiJ_G0027014	Trmt13	93	60.241	ENSAMXG00000017963	trmt13	99	53.766	Astyanax_mexicanus
MGP_PahariEiJ_G0027014	Trmt13	93	90.964	ENSBTAG00000015781	TRMT13	99	84.519	Bos_taurus
MGP_PahariEiJ_G0027014	Trmt13	79	44.000	WBGene00013026	Y49A3A.3	64	30.943	Caenorhabditis_elegans
MGP_PahariEiJ_G0027014	Trmt13	99	85.535	ENSCJAG00000000200	TRMT13	98	87.963	Callithrix_jacchus
MGP_PahariEiJ_G0027014	Trmt13	65	85.897	ENSCAFG00000020021	TRMT13	98	85.897	Canis_familiaris
MGP_PahariEiJ_G0027014	Trmt13	93	92.771	ENSCAFG00020011572	TRMT13	99	88.502	Canis_lupus_dingo
MGP_PahariEiJ_G0027014	Trmt13	93	91.566	ENSCHIG00000015395	TRMT13	99	84.519	Capra_hircus
MGP_PahariEiJ_G0027014	Trmt13	93	92.169	ENSTSYG00000010811	TRMT13	98	86.869	Carlito_syrichta
MGP_PahariEiJ_G0027014	Trmt13	59	89.189	ENSCAPG00000009085	TRMT13	100	66.942	Cavia_aperea
MGP_PahariEiJ_G0027014	Trmt13	99	85.774	ENSCPOG00000000694	TRMT13	99	85.774	Cavia_porcellus
MGP_PahariEiJ_G0027014	Trmt13	99	86.583	ENSCCAG00000023772	TRMT13	99	87.037	Cebus_capucinus
MGP_PahariEiJ_G0027014	Trmt13	99	87.002	ENSCATG00000033556	TRMT13	99	87.002	Cercocebus_atys
MGP_PahariEiJ_G0027014	Trmt13	93	90.964	ENSCLAG00000008220	TRMT13	99	83.491	Chinchilla_lanigera
MGP_PahariEiJ_G0027014	Trmt13	99	87.212	ENSCSAG00000001506	TRMT13	99	87.212	Chlorocebus_sabaeus
MGP_PahariEiJ_G0027014	Trmt13	93	74.096	ENSCPBG00000026671	TRMT13	99	66.667	Chrysemys_picta_bellii
MGP_PahariEiJ_G0027014	Trmt13	99	87.421	ENSCANG00000034659	TRMT13	99	87.421	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0027014	Trmt13	99	89.212	ENSCGRG00001021601	Trmt13	100	89.212	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0027014	Trmt13	53	87.597	ENSCGRG00000000093	-	99	87.597	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0027014	Trmt13	96	48.614	ENSCSEG00000000591	trmt13	98	48.614	Cynoglossus_semilaevis
MGP_PahariEiJ_G0027014	Trmt13	98	50.000	ENSCVAG00000017342	trmt13	94	49.793	Cyprinodon_variegatus
MGP_PahariEiJ_G0027014	Trmt13	76	79.167	ENSDARG00000102846	trmt13	98	56.871	Danio_rerio
MGP_PahariEiJ_G0027014	Trmt13	98	84.192	ENSDNOG00000001710	TRMT13	89	84.192	Dasypus_novemcinctus
MGP_PahariEiJ_G0027014	Trmt13	99	84.696	ENSDORG00000015808	Trmt13	99	84.696	Dipodomys_ordii
MGP_PahariEiJ_G0027014	Trmt13	96	31.733	FBgn0037435	CG18048	95	31.733	Drosophila_melanogaster
MGP_PahariEiJ_G0027014	Trmt13	99	70.981	ENSETEG00000005819	TRMT13	99	70.981	Echinops_telfairi
MGP_PahariEiJ_G0027014	Trmt13	83	58.182	ENSEBUG00000014444	trmt13	96	44.946	Eptatretus_burgeri
MGP_PahariEiJ_G0027014	Trmt13	93	93.373	ENSEASG00005015918	TRMT13	99	87.238	Equus_asinus_asinus
MGP_PahariEiJ_G0027014	Trmt13	93	93.373	ENSECAG00000022626	TRMT13	99	86.820	Equus_caballus
MGP_PahariEiJ_G0027014	Trmt13	93	88.554	ENSEEUG00000000294	TRMT13	78	77.586	Erinaceus_europaeus
MGP_PahariEiJ_G0027014	Trmt13	97	59.011	ENSELUG00000003803	trmt13	99	55.579	Esox_lucius
MGP_PahariEiJ_G0027014	Trmt13	93	93.373	ENSFCAG00000030618	TRMT13	100	87.156	Felis_catus
MGP_PahariEiJ_G0027014	Trmt13	93	72.892	ENSFALG00000002424	TRMT13	98	64.119	Ficedula_albicollis
MGP_PahariEiJ_G0027014	Trmt13	93	92.771	ENSFDAG00000006342	TRMT13	99	86.639	Fukomys_damarensis
MGP_PahariEiJ_G0027014	Trmt13	98	50.820	ENSFHEG00000022954	trmt13	98	52.109	Fundulus_heteroclitus
MGP_PahariEiJ_G0027014	Trmt13	76	72.917	ENSGMOG00000013223	trmt13	100	50.000	Gadus_morhua
MGP_PahariEiJ_G0027014	Trmt13	91	72.393	ENSGALG00000005290	TRMT13	98	63.753	Gallus_gallus
MGP_PahariEiJ_G0027014	Trmt13	97	51.515	ENSGAFG00000001577	trmt13	82	51.047	Gambusia_affinis
MGP_PahariEiJ_G0027014	Trmt13	78	71.429	ENSGACG00000013428	trmt13	99	51.050	Gasterosteus_aculeatus
MGP_PahariEiJ_G0027014	Trmt13	93	74.850	ENSGAGG00000023303	TRMT13	99	72.161	Gopherus_agassizii
MGP_PahariEiJ_G0027014	Trmt13	99	86.792	ENSGGOG00000005616	TRMT13	99	86.792	Gorilla_gorilla
MGP_PahariEiJ_G0027014	Trmt13	93	58.721	ENSHBUG00000007754	trmt13	99	53.376	Haplochromis_burtoni
MGP_PahariEiJ_G0027014	Trmt13	99	88.518	ENSHGLG00000002164	TRMT13	99	88.518	Heterocephalus_glaber_female
MGP_PahariEiJ_G0027014	Trmt13	99	88.518	ENSHGLG00100001618	TRMT13	99	88.518	Heterocephalus_glaber_male
MGP_PahariEiJ_G0027014	Trmt13	97	46.822	ENSHCOG00000020553	trmt13	99	46.398	Hippocampus_comes
MGP_PahariEiJ_G0027014	Trmt13	98	57.986	ENSIPUG00000024787	trmt13	99	57.986	Ictalurus_punctatus
MGP_PahariEiJ_G0027014	Trmt13	99	87.212	ENSSTOG00000013483	TRMT13	99	87.212	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0027014	Trmt13	93	90.964	ENSJJAG00000018012	Trmt13	99	85.624	Jaculus_jaculus
MGP_PahariEiJ_G0027014	Trmt13	65	51.250	ENSKMAG00000007639	trmt13	94	51.250	Kryptolebias_marmoratus
MGP_PahariEiJ_G0027014	Trmt13	83	67.308	ENSLBEG00000020238	trmt13	100	50.830	Labrus_bergylta
MGP_PahariEiJ_G0027014	Trmt13	93	66.265	ENSLACG00000013153	TRMT13	100	60.546	Latimeria_chalumnae
MGP_PahariEiJ_G0027014	Trmt13	98	61.932	ENSLOCG00000000418	trmt13	97	58.913	Lepisosteus_oculatus
MGP_PahariEiJ_G0027014	Trmt13	77	84.595	ENSLAFG00000002383	TRMT13	100	84.595	Loxodonta_africana
MGP_PahariEiJ_G0027014	Trmt13	99	87.002	ENSMFAG00000034681	TRMT13	99	87.037	Macaca_fascicularis
MGP_PahariEiJ_G0027014	Trmt13	99	87.002	ENSMMUG00000004243	TRMT13	99	87.037	Macaca_mulatta
MGP_PahariEiJ_G0027014	Trmt13	99	87.002	ENSMNEG00000036102	TRMT13	99	87.037	Macaca_nemestrina
MGP_PahariEiJ_G0027014	Trmt13	99	87.421	ENSMLEG00000034258	TRMT13	99	87.963	Mandrillus_leucophaeus
MGP_PahariEiJ_G0027014	Trmt13	81	70.588	ENSMAMG00000016597	trmt13	95	52.165	Mastacembelus_armatus
MGP_PahariEiJ_G0027014	Trmt13	93	58.140	ENSMZEG00005020959	trmt13	99	53.079	Maylandia_zebra
MGP_PahariEiJ_G0027014	Trmt13	93	72.892	ENSMGAG00000006970	TRMT13	99	65.877	Meleagris_gallopavo
MGP_PahariEiJ_G0027014	Trmt13	100	87.137	ENSMAUG00000010448	Trmt13	100	87.137	Mesocricetus_auratus
MGP_PahariEiJ_G0027014	Trmt13	99	87.238	ENSMICG00000005283	TRMT13	100	88.073	Microcebus_murinus
MGP_PahariEiJ_G0027014	Trmt13	99	87.029	ENSMOCG00000019914	Trmt13	99	87.029	Microtus_ochrogaster
MGP_PahariEiJ_G0027014	Trmt13	92	49.638	ENSMMOG00000007762	trmt13	93	49.638	Mola_mola
MGP_PahariEiJ_G0027014	Trmt13	93	83.133	ENSMODG00000003646	TRMT13	99	73.333	Monodelphis_domestica
MGP_PahariEiJ_G0027014	Trmt13	99	50.104	ENSMALG00000020965	trmt13	99	50.104	Monopterus_albus
MGP_PahariEiJ_G0027014	Trmt13	100	97.159	MGP_CAROLIEiJ_G0025568	Trmt13	100	97.159	Mus_caroli
MGP_PahariEiJ_G0027014	Trmt13	100	96.466	ENSMUSG00000033439	Trmt13	100	96.466	Mus_musculus
MGP_PahariEiJ_G0027014	Trmt13	100	96.591	MGP_SPRETEiJ_G0026518	Trmt13	100	96.591	Mus_spretus
MGP_PahariEiJ_G0027014	Trmt13	83	86.538	ENSMPUG00000012169	-	97	86.364	Mustela_putorius_furo
MGP_PahariEiJ_G0027014	Trmt13	72	92.188	ENSMPUG00000002078	-	99	82.804	Mustela_putorius_furo
MGP_PahariEiJ_G0027014	Trmt13	93	90.361	ENSMLUG00000002124	TRMT13	98	77.542	Myotis_lucifugus
MGP_PahariEiJ_G0027014	Trmt13	93	56.395	ENSNBRG00000006783	trmt13	98	49.372	Neolamprologus_brichardi
MGP_PahariEiJ_G0027014	Trmt13	99	87.002	ENSNLEG00000035917	TRMT13	99	87.037	Nomascus_leucogenys
MGP_PahariEiJ_G0027014	Trmt13	95	66.667	ENSMEUG00000013346	-	100	70.968	Notamacropus_eugenii
MGP_PahariEiJ_G0027014	Trmt13	93	90.809	ENSOPRG00000012048	TRMT13	66	90.809	Ochotona_princeps
MGP_PahariEiJ_G0027014	Trmt13	99	88.571	ENSODEG00000006075	-	100	88.571	Octodon_degus
MGP_PahariEiJ_G0027014	Trmt13	95	56.548	ENSONIG00000004574	trmt13	99	52.954	Oreochromis_niloticus
MGP_PahariEiJ_G0027014	Trmt13	93	78.313	ENSOANG00000012057	TRMT13	99	71.926	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0027014	Trmt13	99	87.002	ENSOCUG00000023095	TRMT13	99	87.002	Oryctolagus_cuniculus
MGP_PahariEiJ_G0027014	Trmt13	97	47.059	ENSORLG00000003320	trmt13	99	47.379	Oryzias_latipes
MGP_PahariEiJ_G0027014	Trmt13	96	47.753	ENSORLG00020005972	trmt13	98	46.996	Oryzias_latipes_hni
MGP_PahariEiJ_G0027014	Trmt13	78	73.469	ENSORLG00015002270	trmt13	99	51.271	Oryzias_latipes_hsok
MGP_PahariEiJ_G0027014	Trmt13	78	73.469	ENSOMEG00000006724	trmt13	94	51.923	Oryzias_melastigma
MGP_PahariEiJ_G0027014	Trmt13	98	86.892	ENSOGAG00000005618	TRMT13	96	86.611	Otolemur_garnettii
MGP_PahariEiJ_G0027014	Trmt13	93	91.566	ENSOARG00000017983	TRMT13	99	84.519	Ovis_aries
MGP_PahariEiJ_G0027014	Trmt13	99	86.792	ENSPPAG00000043736	TRMT13	99	86.792	Pan_paniscus
MGP_PahariEiJ_G0027014	Trmt13	93	93.373	ENSPPRG00000003424	TRMT13	100	87.156	Panthera_pardus
MGP_PahariEiJ_G0027014	Trmt13	93	93.373	ENSPTIG00000018598	TRMT13	100	87.156	Panthera_tigris_altaica
MGP_PahariEiJ_G0027014	Trmt13	99	86.792	ENSPTRG00000001001	TRMT13	99	86.792	Pan_troglodytes
MGP_PahariEiJ_G0027014	Trmt13	99	87.421	ENSPANG00000007598	TRMT13	99	87.421	Papio_anubis
MGP_PahariEiJ_G0027014	Trmt13	93	62.048	ENSPKIG00000001514	trmt13	98	55.120	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0027014	Trmt13	93	71.856	ENSPSIG00000012703	TRMT13	99	66.346	Pelodiscus_sinensis
MGP_PahariEiJ_G0027014	Trmt13	76	75.000	ENSPMGG00000013298	trmt13	96	50.743	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0027014	Trmt13	99	87.866	ENSPEMG00000000275	Trmt13	99	87.866	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0027014	Trmt13	91	53.293	ENSPMAG00000000823	trmt13	97	46.444	Petromyzon_marinus
MGP_PahariEiJ_G0027014	Trmt13	93	82.530	ENSPCIG00000007699	TRMT13	99	74.790	Phascolarctos_cinereus
MGP_PahariEiJ_G0027014	Trmt13	93	53.012	ENSPFOG00000008675	trmt13	96	49.569	Poecilia_formosa
MGP_PahariEiJ_G0027014	Trmt13	96	49.153	ENSPLAG00000009709	trmt13	99	49.153	Poecilia_latipinna
MGP_PahariEiJ_G0027014	Trmt13	90	53.480	ENSPMEG00000022954	trmt13	99	48.298	Poecilia_mexicana
MGP_PahariEiJ_G0027014	Trmt13	91	53.430	ENSPREG00000005645	trmt13	94	50.526	Poecilia_reticulata
MGP_PahariEiJ_G0027014	Trmt13	99	86.402	ENSPPYG00000001120	TRMT13	99	86.402	Pongo_abelii
MGP_PahariEiJ_G0027014	Trmt13	99	84.728	ENSPCAG00000002340	TRMT13	99	84.728	Procavia_capensis
MGP_PahariEiJ_G0027014	Trmt13	99	87.657	ENSPCOG00000017984	TRMT13	99	88.889	Propithecus_coquereli
MGP_PahariEiJ_G0027014	Trmt13	99	85.983	ENSPVAG00000017430	TRMT13	99	85.983	Pteropus_vampyrus
MGP_PahariEiJ_G0027014	Trmt13	93	57.558	ENSPNYG00000013690	trmt13	99	51.483	Pundamilia_nyererei
MGP_PahariEiJ_G0027014	Trmt13	76	77.083	ENSPNAG00000022130	trmt13	99	54.936	Pygocentrus_nattereri
MGP_PahariEiJ_G0027014	Trmt13	99	94.375	ENSRNOG00000015140	Trmt13	97	94.375	Rattus_norvegicus
MGP_PahariEiJ_G0027014	Trmt13	99	87.421	ENSRBIG00000037686	TRMT13	99	87.421	Rhinopithecus_bieti
MGP_PahariEiJ_G0027014	Trmt13	99	87.421	ENSRROG00000044057	TRMT13	99	87.421	Rhinopithecus_roxellana
MGP_PahariEiJ_G0027014	Trmt13	91	30.124	YOL125W	-	64	30.124	Saccharomyces_cerevisiae
MGP_PahariEiJ_G0027014	Trmt13	99	86.792	ENSSBOG00000026541	TRMT13	99	87.963	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0027014	Trmt13	93	83.133	ENSSHAG00000005213	TRMT13	95	75.758	Sarcophilus_harrisii
MGP_PahariEiJ_G0027014	Trmt13	93	61.446	ENSSFOG00015017560	trmt13	99	54.352	Scleropages_formosus
MGP_PahariEiJ_G0027014	Trmt13	92	56.204	ENSSMAG00000014592	trmt13	97	50.524	Scophthalmus_maximus
MGP_PahariEiJ_G0027014	Trmt13	99	51.087	ENSSDUG00000015508	trmt13	99	49.293	Seriola_dumerili
MGP_PahariEiJ_G0027014	Trmt13	99	51.087	ENSSLDG00000019060	trmt13	98	50.102	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0027014	Trmt13	86	86.093	ENSSARG00000010344	TRMT13	99	73.362	Sorex_araneus
MGP_PahariEiJ_G0027014	Trmt13	93	71.084	ENSSPUG00000016339	TRMT13	99	67.325	Sphenodon_punctatus
MGP_PahariEiJ_G0027014	Trmt13	83	67.308	ENSSPAG00000011922	trmt13	99	51.592	Stegastes_partitus
MGP_PahariEiJ_G0027014	Trmt13	93	92.169	ENSSSCG00000006869	TRMT13	99	84.728	Sus_scrofa
MGP_PahariEiJ_G0027014	Trmt13	93	73.494	ENSTGUG00000005253	TRMT13	98	65.217	Taeniopygia_guttata
MGP_PahariEiJ_G0027014	Trmt13	93	53.488	ENSTRUG00000008400	trmt13	99	49.370	Takifugu_rubripes
MGP_PahariEiJ_G0027014	Trmt13	88	87.342	ENSTBEG00000008911	TRMT13	99	69.976	Tupaia_belangeri
MGP_PahariEiJ_G0027014	Trmt13	76	93.750	ENSTTRG00000015302	-	60	90.789	Tursiops_truncatus
MGP_PahariEiJ_G0027014	Trmt13	98	80.753	ENSUAMG00000017251	TRMT13	99	80.753	Ursus_americanus
MGP_PahariEiJ_G0027014	Trmt13	93	91.566	ENSUMAG00000007901	TRMT13	99	86.014	Ursus_maritimus
MGP_PahariEiJ_G0027014	Trmt13	89	69.159	ENSVPAG00000001034	TRMT13	99	69.159	Vicugna_pacos
MGP_PahariEiJ_G0027014	Trmt13	92	93.293	ENSVVUG00000021996	TRMT13	99	85.983	Vulpes_vulpes
MGP_PahariEiJ_G0027014	Trmt13	83	76.923	ENSXETG00000013204	trmt13	99	55.414	Xenopus_tropicalis
MGP_PahariEiJ_G0027014	Trmt13	83	61.538	ENSXCOG00000008120	-	91	56.566	Xiphophorus_couchianus
MGP_PahariEiJ_G0027014	Trmt13	96	48.211	ENSXMAG00000010765	trmt13	99	48.211	Xiphophorus_maculatus