EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0027599 (Gene tree)
Gene ID: 110321697
Gene Symbol: Ncl
Alias: B530004O11Rik|C23
Full Name: nucleolin
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 13423 bases
Position: chr5:63764425-63777847
Accession: 110321697
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0074126	RRM_1	PF00076.22	1.5e-58	1	4
MGP_PahariEiJ_P0074126	RRM_1	PF00076.22	1.5e-58	2	4
MGP_PahariEiJ_P0074126	RRM_1	PF00076.22	1.5e-58	3	4
MGP_PahariEiJ_P0074126	RRM_1	PF00076.22	1.5e-58	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0074129	-	1071	-	-	- (aa)	-	-
MGP_PahariEiJ_T0074128	-	620	-	-	- (aa)	-	-
MGP_PahariEiJ_T0074130	-	505	-	-	- (aa)	-	-
MGP_PahariEiJ_T0074127	-	3076	-	-	- (aa)	-	-
MGP_PahariEiJ_T0074126	-	7657	-	MGP_PahariEiJ_P0074126	706 (aa)	XP_021053773	UPI000A30BFDC

Gene Model

Click here to download MGP_PahariEiJ_G0027599's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0027599's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0027599	Ncl	61	82.766	ENSG00000115053	NCL	93	80.000	Homo_sapiens
MGP_PahariEiJ_G0027599	Ncl	53	86.280	ENSAMEG00000016289	NCL	92	76.364	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0027599	Ncl	99	64.957	ENSANAG00000024378	-	95	74.242	Aotus_nancymaae
MGP_PahariEiJ_G0027599	Ncl	58	83.529	ENSANAG00000035814	-	92	78.300	Aotus_nancymaae
MGP_PahariEiJ_G0027599	Ncl	53	83.264	ENSBTAG00000026909	-	82	83.613	Bos_taurus
MGP_PahariEiJ_G0027599	Ncl	54	82.716	ENSBTAG00000050728	-	81	82.716	Bos_taurus
MGP_PahariEiJ_G0027599	Ncl	94	73.615	ENSBTAG00000016174	NCL	92	76.090	Bos_taurus
MGP_PahariEiJ_G0027599	Ncl	53	86.807	ENSCJAG00000013538	NCL	92	76.054	Callithrix_jacchus
MGP_PahariEiJ_G0027599	Ncl	92	78.669	ENSCAFG00000011037	NCL	92	77.610	Canis_familiaris
MGP_PahariEiJ_G0027599	Ncl	84	78.125	ENSCAFG00020023145	NCL	89	76.974	Canis_lupus_dingo
MGP_PahariEiJ_G0027599	Ncl	72	84.367	ENSCHIG00000021052	-	86	84.367	Capra_hircus
MGP_PahariEiJ_G0027599	Ncl	92	69.323	ENSCHIG00000026149	-	93	70.526	Capra_hircus
MGP_PahariEiJ_G0027599	Ncl	75	73.094	ENSCHIG00000012143	-	92	67.431	Capra_hircus
MGP_PahariEiJ_G0027599	Ncl	85	76.183	ENSCHIG00000010894	-	91	76.020	Capra_hircus
MGP_PahariEiJ_G0027599	Ncl	92	79.154	ENSTSYG00000004355	-	92	77.341	Carlito_syrichta
MGP_PahariEiJ_G0027599	Ncl	95	75.643	ENSTSYG00000029779	-	98	73.129	Carlito_syrichta
MGP_PahariEiJ_G0027599	Ncl	59	73.944	ENSTSYG00000036886	-	91	66.616	Carlito_syrichta
MGP_PahariEiJ_G0027599	Ncl	91	73.047	ENSCAPG00000009405	NCL	91	72.435	Cavia_aperea
MGP_PahariEiJ_G0027599	Ncl	92	75.873	ENSCPOG00000001034	NCL	92	75.873	Cavia_porcellus
MGP_PahariEiJ_G0027599	Ncl	53	86.807	ENSCCAG00000021040	-	92	77.356	Cebus_capucinus
MGP_PahariEiJ_G0027599	Ncl	92	78.452	ENSCATG00000037033	NCL	92	77.086	Cercocebus_atys
MGP_PahariEiJ_G0027599	Ncl	92	75.643	ENSCLAG00000013080	NCL	92	73.979	Chinchilla_lanigera
MGP_PahariEiJ_G0027599	Ncl	53	86.579	ENSCSAG00000006660	NCL	95	88.155	Chlorocebus_sabaeus
MGP_PahariEiJ_G0027599	Ncl	60	70.000	ENSCHOG00000012860	NCL	89	70.208	Choloepus_hoffmanni
MGP_PahariEiJ_G0027599	Ncl	61	83.077	ENSCANG00000036756	NCL	90	85.455	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0027599	Ncl	92	87.156	ENSCGRG00001024315	-	91	87.768	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0027599	Ncl	92	74.273	ENSCGRG00001022350	-	95	74.422	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0027599	Ncl	85	86.667	ENSCGRG00000017894	-	88	86.224	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0027599	Ncl	92	74.387	ENSCGRG00000000507	-	93	72.994	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0027599	Ncl	92	77.074	ENSDNOG00000010783	-	92	76.772	Dasypus_novemcinctus
MGP_PahariEiJ_G0027599	Ncl	100	69.705	ENSDNOG00000046347	-	99	69.144	Dasypus_novemcinctus
MGP_PahariEiJ_G0027599	Ncl	56	73.250	ENSDORG00000023596	-	92	69.029	Dipodomys_ordii
MGP_PahariEiJ_G0027599	Ncl	53	86.508	ENSDORG00000012513	-	91	77.473	Dipodomys_ordii
MGP_PahariEiJ_G0027599	Ncl	71	59.401	ENSETEG00000008139	-	89	59.239	Echinops_telfairi
MGP_PahariEiJ_G0027599	Ncl	70	54.819	ENSETEG00000008553	-	88	57.044	Echinops_telfairi
MGP_PahariEiJ_G0027599	Ncl	53	82.086	ENSETEG00000014756	-	86	82.181	Echinops_telfairi
MGP_PahariEiJ_G0027599	Ncl	53	82.586	ENSETEG00000018937	-	85	72.358	Echinops_telfairi
MGP_PahariEiJ_G0027599	Ncl	89	77.484	ENSEASG00005008488	NCL	91	77.329	Equus_asinus_asinus
MGP_PahariEiJ_G0027599	Ncl	92	77.576	ENSECAG00000021868	NCL	92	77.424	Equus_caballus
MGP_PahariEiJ_G0027599	Ncl	53	81.481	ENSEEUG00000005913	NCL	85	72.817	Erinaceus_europaeus
MGP_PahariEiJ_G0027599	Ncl	92	77.795	ENSFCAG00000027622	NCL	92	77.644	Felis_catus
MGP_PahariEiJ_G0027599	Ncl	91	77.439	ENSFDAG00000014291	NCL	92	75.762	Fukomys_damarensis
MGP_PahariEiJ_G0027599	Ncl	61	82.766	ENSGGOG00000004300	NCL	92	76.667	Gorilla_gorilla
MGP_PahariEiJ_G0027599	Ncl	53	78.989	ENSHGLG00000011069	-	62	75.576	Heterocephalus_glaber_female
MGP_PahariEiJ_G0027599	Ncl	92	77.005	ENSHGLG00000002031	-	92	75.340	Heterocephalus_glaber_female
MGP_PahariEiJ_G0027599	Ncl	73	78.133	ENSHGLG00100000745	-	82	78.249	Heterocephalus_glaber_male
MGP_PahariEiJ_G0027599	Ncl	92	77.473	ENSHGLG00100014537	-	92	75.799	Heterocephalus_glaber_male
MGP_PahariEiJ_G0027599	Ncl	53	85.067	ENSJJAG00000016165	Ncl	91	78.681	Jaculus_jaculus
MGP_PahariEiJ_G0027599	Ncl	91	66.820	ENSLAFG00000013061	NCL	91	65.084	Loxodonta_africana
MGP_PahariEiJ_G0027599	Ncl	92	78.485	ENSMFAG00000040385	NCL	92	77.121	Macaca_fascicularis
MGP_PahariEiJ_G0027599	Ncl	92	78.485	ENSMMUG00000018094	NCL	91	85.902	Macaca_mulatta
MGP_PahariEiJ_G0027599	Ncl	75	89.545	ENSMNEG00000023839	NCL	78	82.857	Macaca_nemestrina
MGP_PahariEiJ_G0027599	Ncl	92	78.604	ENSMLEG00000028935	NCL	92	77.238	Mandrillus_leucophaeus
MGP_PahariEiJ_G0027599	Ncl	92	77.086	ENSMICG00000002538	-	92	77.238	Microcebus_murinus
MGP_PahariEiJ_G0027599	Ncl	92	64.985	ENSMICG00000029975	-	86	75.177	Microcebus_murinus
MGP_PahariEiJ_G0027599	Ncl	92	93.056	MGP_CAROLIEiJ_G0014362	Ncl	92	92.130	Mus_caroli
MGP_PahariEiJ_G0027599	Ncl	92	92.604	ENSMUSG00000026234	Ncl	92	91.680	Mus_musculus
MGP_PahariEiJ_G0027599	Ncl	92	92.901	MGP_SPRETEiJ_G0015164	Ncl	92	92.284	Mus_spretus
MGP_PahariEiJ_G0027599	Ncl	92	75.602	ENSMLUG00000014547	NCL	92	75.904	Myotis_lucifugus
MGP_PahariEiJ_G0027599	Ncl	92	85.000	ENSNGAG00000002454	-	91	85.997	Nannospalax_galili
MGP_PahariEiJ_G0027599	Ncl	52	78.610	ENSNGAG00000006188	-	54	78.877	Nannospalax_galili
MGP_PahariEiJ_G0027599	Ncl	61	71.314	ENSNLEG00000014107	-	85	62.890	Nomascus_leucogenys
MGP_PahariEiJ_G0027599	Ncl	61	73.210	ENSODEG00000002441	-	86	77.143	Octodon_degus
MGP_PahariEiJ_G0027599	Ncl	53	82.228	ENSODEG00000003281	-	91	72.561	Octodon_degus
MGP_PahariEiJ_G0027599	Ncl	91	58.919	ENSODEG00000007803	-	90	57.554	Octodon_degus
MGP_PahariEiJ_G0027599	Ncl	92	71.736	ENSOCUG00000004312	NCL	91	70.968	Oryctolagus_cuniculus
MGP_PahariEiJ_G0027599	Ncl	69	82.759	ENSOARG00000013710	-	73	82.028	Ovis_aries
MGP_PahariEiJ_G0027599	Ncl	88	59.859	ENSOARG00000013270	-	100	58.904	Ovis_aries
MGP_PahariEiJ_G0027599	Ncl	61	82.151	ENSOARG00000020709	-	92	73.313	Ovis_aries
MGP_PahariEiJ_G0027599	Ncl	89	70.068	ENSOARG00000004072	-	71	70.507	Ovis_aries
MGP_PahariEiJ_G0027599	Ncl	75	89.545	ENSPPAG00000011619	NCL	92	76.667	Pan_paniscus
MGP_PahariEiJ_G0027599	Ncl	92	77.458	ENSPPRG00000012603	NCL	92	77.307	Panthera_pardus
MGP_PahariEiJ_G0027599	Ncl	91	77.252	ENSPTIG00000010393	NCL	91	77.099	Panthera_tigris_altaica
MGP_PahariEiJ_G0027599	Ncl	78	89.545	ENSPTRG00000013025	NCL	92	76.399	Pan_troglodytes
MGP_PahariEiJ_G0027599	Ncl	92	78.485	ENSPANG00000010292	NCL	92	77.121	Papio_anubis
MGP_PahariEiJ_G0027599	Ncl	61	73.778	ENSPPYG00000013265	NCL	92	70.852	Pongo_abelii
MGP_PahariEiJ_G0027599	Ncl	92	79.728	ENSPCOG00000003051	-	91	78.820	Propithecus_coquereli
MGP_PahariEiJ_G0027599	Ncl	91	74.228	ENSPCOG00000004160	-	94	73.160	Propithecus_coquereli
MGP_PahariEiJ_G0027599	Ncl	92	81.279	ENSPVAG00000000297	NCL	92	79.756	Pteropus_vampyrus
MGP_PahariEiJ_G0027599	Ncl	92	91.311	ENSRNOG00000018273	Ncl	92	89.939	Rattus_norvegicus
MGP_PahariEiJ_G0027599	Ncl	92	75.417	ENSRBIG00000037525	-	91	73.748	Rhinopithecus_bieti
MGP_PahariEiJ_G0027599	Ncl	82	87.197	ENSRBIG00000035396	-	82	85.570	Rhinopithecus_bieti
MGP_PahariEiJ_G0027599	Ncl	94	74.679	ENSRROG00000036103	-	99	73.194	Rhinopithecus_roxellana
MGP_PahariEiJ_G0027599	Ncl	92	78.030	ENSRROG00000028756	-	91	76.818	Rhinopithecus_roxellana
MGP_PahariEiJ_G0027599	Ncl	61	76.310	ENSSBOG00000027549	-	91	71.081	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0027599	Ncl	56	71.628	ENSSBOG00000023094	-	76	71.889	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0027599	Ncl	53	86.544	ENSSBOG00000029193	-	92	76.133	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0027599	Ncl	92	76.946	ENSSSCG00000016275	NCL	92	76.647	Sus_scrofa
MGP_PahariEiJ_G0027599	Ncl	65	72.238	ENSTBEG00000002469	-	66	72.000	Tupaia_belangeri
MGP_PahariEiJ_G0027599	Ncl	55	74.406	ENSTBEG00000001546	-	85	68.791	Tupaia_belangeri
MGP_PahariEiJ_G0027599	Ncl	92	78.723	ENSTTRG00000009094	NCL	91	76.900	Tursiops_truncatus
MGP_PahariEiJ_G0027599	Ncl	53	86.544	ENSUAMG00000005639	NCL	88	81.716	Ursus_americanus
MGP_PahariEiJ_G0027599	Ncl	53	86.544	ENSUMAG00000015789	NCL	92	77.660	Ursus_maritimus
MGP_PahariEiJ_G0027599	Ncl	69	78.873	ENSVPAG00000001796	NCL	69	78.873	Vicugna_pacos
MGP_PahariEiJ_G0027599	Ncl	92	78.067	ENSVVUG00000025564	NCL	91	76.037	Vulpes_vulpes