EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0027928 (Gene tree)
Gene ID: 110321843
Gene Symbol: Swt1
Alias: 1200016B10Rik
Full Name: SWT1%2C RNA endoribonuclease homolog
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 63618 bases
Position: chr5:124434836-124498453
Accession: 110321843
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0075600	PIN_4	PF13638.6	1e-27	1	1
MGP_PahariEiJ_P0075606	PIN_4	PF13638.6	2.9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0075607	-	2458	-	-	- (aa)	-	-
MGP_PahariEiJ_T0075606	-	752	-	MGP_PahariEiJ_P0075606	250 (aa)	-	-
MGP_PahariEiJ_T0075605	-	522	-	MGP_PahariEiJ_P0075605	173 (aa)	-	-
MGP_PahariEiJ_T0075604	-	323	-	-	- (aa)	-	-
MGP_PahariEiJ_T0075603	-	339	-	-	- (aa)	-	-
MGP_PahariEiJ_T0075602	-	2875	-	MGP_PahariEiJ_P0075602	906 (aa)	-	-
MGP_PahariEiJ_T0075601	-	2833	-	MGP_PahariEiJ_P0075601	675 (aa)	-	-
MGP_PahariEiJ_T0075600	-	3662	XM_021198383	MGP_PahariEiJ_P0075600	903 (aa)	XP_021054042	UPI000A307F2A
MGP_PahariEiJ_T0075609	-	4394	-	-	- (aa)	-	-
MGP_PahariEiJ_T0075608	-	485	-	-	- (aa)	-	-
MGP_PahariEiJ_T0075610	-	1484	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0027928's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0027928's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0027928	Swt1	98	72.185	ENSG00000116668	SWT1	99	71.192	Homo_sapiens
MGP_PahariEiJ_G0027928	Swt1	64	43.750	ENSAPOG00000014897	-	58	35.214	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0027928	Swt1	98	70.907	ENSAMEG00000013585	SWT1	100	70.575	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0027928	Swt1	73	40.437	ENSAOCG00000013932	swt1	58	35.445	Amphiprion_ocellaris
MGP_PahariEiJ_G0027928	Swt1	73	40.984	ENSAPEG00000009613	-	58	35.445	Amphiprion_percula
MGP_PahariEiJ_G0027928	Swt1	68	46.784	ENSATEG00000018946	swt1	63	34.938	Anabas_testudineus
MGP_PahariEiJ_G0027928	Swt1	70	59.551	ENSAPLG00000008607	SWT1	91	50.599	Anas_platyrhynchos
MGP_PahariEiJ_G0027928	Swt1	70	58.427	ENSACAG00000002276	SWT1	67	47.938	Anolis_carolinensis
MGP_PahariEiJ_G0027928	Swt1	98	71.302	ENSANAG00000027068	SWT1	99	70.309	Aotus_nancymaae
MGP_PahariEiJ_G0027928	Swt1	68	41.860	ENSACLG00000009742	swt1	68	33.800	Astatotilapia_calliptera
MGP_PahariEiJ_G0027928	Swt1	75	41.951	ENSAMXG00000010971	swt1	59	38.617	Astyanax_mexicanus
MGP_PahariEiJ_G0027928	Swt1	71	87.006	ENSBTAG00000004492	SWT1	99	65.471	Bos_taurus
MGP_PahariEiJ_G0027928	Swt1	98	69.536	ENSCJAG00000005544	SWT1	100	69.129	Callithrix_jacchus
MGP_PahariEiJ_G0027928	Swt1	99	70.620	ENSCAFG00000013543	SWT1	99	70.185	Canis_familiaris
MGP_PahariEiJ_G0027928	Swt1	98	70.362	ENSCAFG00020015648	SWT1	99	71.849	Canis_lupus_dingo
MGP_PahariEiJ_G0027928	Swt1	98	67.623	ENSCHIG00000023511	SWT1	100	82.234	Capra_hircus
MGP_PahariEiJ_G0027928	Swt1	98	72.848	ENSTSYG00000010470	SWT1	100	71.965	Carlito_syrichta
MGP_PahariEiJ_G0027928	Swt1	96	67.316	ENSCPOG00000014251	SWT1	100	69.784	Cavia_porcellus
MGP_PahariEiJ_G0027928	Swt1	98	71.634	ENSCCAG00000033926	SWT1	99	70.861	Cebus_capucinus
MGP_PahariEiJ_G0027928	Swt1	98	71.035	ENSCATG00000042210	SWT1	99	82.964	Cercocebus_atys
MGP_PahariEiJ_G0027928	Swt1	97	70.819	ENSCLAG00000013959	SWT1	99	70.258	Chinchilla_lanigera
MGP_PahariEiJ_G0027928	Swt1	98	70.815	ENSCSAG00000012895	SWT1	99	70.407	Chlorocebus_sabaeus
MGP_PahariEiJ_G0027928	Swt1	86	84.375	ENSCHOG00000002211	-	64	84.375	Choloepus_hoffmanni
MGP_PahariEiJ_G0027928	Swt1	71	62.147	ENSCPBG00000015691	SWT1	78	51.608	Chrysemys_picta_bellii
MGP_PahariEiJ_G0027928	Swt1	98	70.718	ENSCANG00000032207	SWT1	99	82.534	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0027928	Swt1	100	90.217	ENSCGRG00001022955	Swt1	100	81.332	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0027928	Swt1	100	90.217	ENSCGRG00000010224	Swt1	100	81.676	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0027928	Swt1	65	46.341	ENSCSEG00000017352	swt1	74	34.932	Cynoglossus_semilaevis
MGP_PahariEiJ_G0027928	Swt1	68	46.512	ENSDARG00000094010	swt1	69	36.103	Danio_rerio
MGP_PahariEiJ_G0027928	Swt1	96	63.289	ENSDNOG00000005254	SWT1	100	65.777	Dasypus_novemcinctus
MGP_PahariEiJ_G0027928	Swt1	98	71.221	ENSDORG00000010531	Swt1	100	70.549	Dipodomys_ordii
MGP_PahariEiJ_G0027928	Swt1	96	68.343	ENSEASG00005005530	SWT1	100	68.278	Equus_asinus_asinus
MGP_PahariEiJ_G0027928	Swt1	90	71.463	ENSECAG00000012085	SWT1	100	69.540	Equus_caballus
MGP_PahariEiJ_G0027928	Swt1	83	86.207	ENSEEUG00000003664	SWT1	88	86.207	Erinaceus_europaeus
MGP_PahariEiJ_G0027928	Swt1	80	45.098	ENSELUG00000020565	swt1	57	37.437	Esox_lucius
MGP_PahariEiJ_G0027928	Swt1	98	71.271	ENSFCAG00000011286	SWT1	100	70.166	Felis_catus
MGP_PahariEiJ_G0027928	Swt1	82	55.340	ENSFALG00000003206	SWT1	69	50.160	Ficedula_albicollis
MGP_PahariEiJ_G0027928	Swt1	98	71.349	ENSFDAG00000007569	SWT1	100	70.903	Fukomys_damarensis
MGP_PahariEiJ_G0027928	Swt1	65	61.728	ENSGALG00000034230	SWT1	65	53.616	Gallus_gallus
MGP_PahariEiJ_G0027928	Swt1	64	45.625	ENSGAFG00000007803	-	61	33.940	Gambusia_affinis
MGP_PahariEiJ_G0027928	Swt1	71	62.011	ENSGAGG00000025050	SWT1	99	57.513	Gopherus_agassizii
MGP_PahariEiJ_G0027928	Swt1	58	82.759	ENSGGOG00000041167	-	95	83.269	Gorilla_gorilla
MGP_PahariEiJ_G0027928	Swt1	68	41.860	ENSHBUG00000006188	swt1	68	33.841	Haplochromis_burtoni
MGP_PahariEiJ_G0027928	Swt1	97	70.701	ENSHGLG00000006542	SWT1	99	70.169	Heterocephalus_glaber_female
MGP_PahariEiJ_G0027928	Swt1	92	78.404	ENSHGLG00100014408	SWT1	99	71.186	Heterocephalus_glaber_male
MGP_PahariEiJ_G0027928	Swt1	69	46.552	ENSIPUG00000009113	-	69	34.649	Ictalurus_punctatus
MGP_PahariEiJ_G0027928	Swt1	98	73.133	ENSSTOG00000010356	SWT1	100	72.687	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0027928	Swt1	98	70.964	ENSJJAG00000015927	Swt1	100	69.843	Jaculus_jaculus
MGP_PahariEiJ_G0027928	Swt1	68	43.529	ENSKMAG00000012533	swt1	59	35.374	Kryptolebias_marmoratus
MGP_PahariEiJ_G0027928	Swt1	62	45.860	ENSLBEG00000020663	-	57	36.395	Labrus_bergylta
MGP_PahariEiJ_G0027928	Swt1	70	57.143	ENSLACG00000009194	SWT1	99	46.275	Latimeria_chalumnae
MGP_PahariEiJ_G0027928	Swt1	69	47.399	ENSLOCG00000001749	swt1	98	41.481	Lepisosteus_oculatus
MGP_PahariEiJ_G0027928	Swt1	70	84.270	ENSLAFG00000004346	-	100	83.844	Loxodonta_africana
MGP_PahariEiJ_G0027928	Swt1	98	70.815	ENSMFAG00000031793	SWT1	99	82.735	Macaca_fascicularis
MGP_PahariEiJ_G0027928	Swt1	98	68.525	ENSMMUG00000013882	SWT1	99	79.725	Macaca_mulatta
MGP_PahariEiJ_G0027928	Swt1	98	71.035	ENSMNEG00000035502	SWT1	99	82.906	Macaca_nemestrina
MGP_PahariEiJ_G0027928	Swt1	98	71.381	ENSMLEG00000038692	SWT1	99	83.135	Mandrillus_leucophaeus
MGP_PahariEiJ_G0027928	Swt1	68	41.860	ENSMZEG00005018489	swt1	68	33.841	Maylandia_zebra
MGP_PahariEiJ_G0027928	Swt1	65	60.976	ENSMGAG00000000973	SWT1	100	52.254	Meleagris_gallopavo
MGP_PahariEiJ_G0027928	Swt1	100	92.655	ENSMAUG00000007996	Swt1	100	74.891	Mesocricetus_auratus
MGP_PahariEiJ_G0027928	Swt1	98	73.951	ENSMICG00000014975	SWT1	100	72.958	Microcebus_murinus
MGP_PahariEiJ_G0027928	Swt1	100	89.674	ENSMOCG00000009776	Swt1	100	82.747	Microtus_ochrogaster
MGP_PahariEiJ_G0027928	Swt1	96	61.240	ENSMODG00000007472	SWT1	99	56.957	Monodelphis_domestica
MGP_PahariEiJ_G0027928	Swt1	72	44.262	ENSMALG00000019308	swt1	60	36.134	Monopterus_albus
MGP_PahariEiJ_G0027928	Swt1	100	96.610	MGP_CAROLIEiJ_G0014692	Swt1	100	96.610	Mus_caroli
MGP_PahariEiJ_G0027928	Swt1	100	93.220	ENSMUSG00000052748	Swt1	99	90.400	Mus_musculus
MGP_PahariEiJ_G0027928	Swt1	100	95.480	MGP_SPRETEiJ_G0015499	Swt1	100	92.400	Mus_spretus
MGP_PahariEiJ_G0027928	Swt1	98	70.875	ENSMPUG00000011913	SWT1	100	69.989	Mustela_putorius_furo
MGP_PahariEiJ_G0027928	Swt1	94	78.974	ENSMLUG00000001142	SWT1	100	68.770	Myotis_lucifugus
MGP_PahariEiJ_G0027928	Swt1	95	94.512	ENSNGAG00000021080	Swt1	100	78.595	Nannospalax_galili
MGP_PahariEiJ_G0027928	Swt1	98	71.350	ENSNLEG00000018031	SWT1	99	71.160	Nomascus_leucogenys
MGP_PahariEiJ_G0027928	Swt1	98	45.143	ENSMEUG00000000236	-	99	44.812	Notamacropus_eugenii
MGP_PahariEiJ_G0027928	Swt1	87	67.536	ENSOPRG00000000692	SWT1	88	67.536	Ochotona_princeps
MGP_PahariEiJ_G0027928	Swt1	70	42.373	ENSONIG00000009994	swt1	100	36.462	Oreochromis_niloticus
MGP_PahariEiJ_G0027928	Swt1	80	69.000	ENSOANG00000001013	-	87	62.791	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0027928	Swt1	97	63.938	ENSOCUG00000004901	SWT1	99	63.938	Oryctolagus_cuniculus
MGP_PahariEiJ_G0027928	Swt1	63	45.283	ENSORLG00000009682	swt1	58	34.991	Oryzias_latipes
MGP_PahariEiJ_G0027928	Swt1	63	45.283	ENSORLG00020011654	swt1	59	35.163	Oryzias_latipes_hni
MGP_PahariEiJ_G0027928	Swt1	63	45.912	ENSORLG00015007734	swt1	59	34.991	Oryzias_latipes_hsok
MGP_PahariEiJ_G0027928	Swt1	66	42.515	ENSOMEG00000006607	swt1	59	35.041	Oryzias_melastigma
MGP_PahariEiJ_G0027928	Swt1	98	70.971	ENSOGAG00000016195	SWT1	100	70.088	Otolemur_garnettii
MGP_PahariEiJ_G0027928	Swt1	99	70.729	ENSOARG00000004156	SWT1	99	69.859	Ovis_aries
MGP_PahariEiJ_G0027928	Swt1	98	72.185	ENSPPAG00000021400	SWT1	99	71.082	Pan_paniscus
MGP_PahariEiJ_G0027928	Swt1	98	71.460	ENSPPRG00000023754	SWT1	100	70.829	Panthera_pardus
MGP_PahariEiJ_G0027928	Swt1	98	71.350	ENSPTIG00000021889	SWT1	100	70.718	Panthera_tigris_altaica
MGP_PahariEiJ_G0027928	Swt1	98	72.185	ENSPTRG00000001777	SWT1	99	71.082	Pan_troglodytes
MGP_PahariEiJ_G0027928	Swt1	98	70.673	ENSPANG00000005099	SWT1	99	82.624	Papio_anubis
MGP_PahariEiJ_G0027928	Swt1	69	45.087	ENSPKIG00000005979	swt1	61	35.548	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0027928	Swt1	64	46.914	ENSPMGG00000000152	-	75	33.090	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0027928	Swt1	100	91.525	ENSPEMG00000008208	Swt1	100	82.967	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0027928	Swt1	85	70.492	ENSPCIG00000002443	SWT1	99	76.336	Phascolarctos_cinereus
MGP_PahariEiJ_G0027928	Swt1	86	39.819	ENSPFOG00000010988	-	69	33.890	Poecilia_formosa
MGP_PahariEiJ_G0027928	Swt1	69	43.678	ENSPLAG00000022908	-	60	33.445	Poecilia_latipinna
MGP_PahariEiJ_G0027928	Swt1	69	43.678	ENSPMEG00000006943	-	60	33.940	Poecilia_mexicana
MGP_PahariEiJ_G0027928	Swt1	98	70.939	ENSPPYG00000000415	SWT1	99	70.419	Pongo_abelii
MGP_PahariEiJ_G0027928	Swt1	98	59.378	ENSPCAG00000008337	SWT1	99	59.000	Procavia_capensis
MGP_PahariEiJ_G0027928	Swt1	67	81.319	ENSPCOG00000018195	-	93	81.319	Propithecus_coquereli
MGP_PahariEiJ_G0027928	Swt1	78	73.766	ENSPVAG00000005968	SWT1	79	73.870	Pteropus_vampyrus
MGP_PahariEiJ_G0027928	Swt1	68	41.860	ENSPNYG00000012934	swt1	68	33.841	Pundamilia_nyererei
MGP_PahariEiJ_G0027928	Swt1	68	47.368	ENSPNAG00000017795	swt1	70	35.302	Pygocentrus_nattereri
MGP_PahariEiJ_G0027928	Swt1	100	91.667	ENSRNOG00000032258	Swt1	100	89.023	Rattus_norvegicus
MGP_PahariEiJ_G0027928	Swt1	98	68.653	ENSRBIG00000040630	SWT1	99	79.623	Rhinopithecus_bieti
MGP_PahariEiJ_G0027928	Swt1	87	67.484	ENSRROG00000028596	SWT1	100	65.094	Rhinopithecus_roxellana
MGP_PahariEiJ_G0027928	Swt1	98	71.696	ENSSBOG00000028825	SWT1	99	70.705	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0027928	Swt1	98	57.158	ENSSHAG00000009241	SWT1	99	56.652	Sarcophilus_harrisii
MGP_PahariEiJ_G0027928	Swt1	65	50.000	ENSSFOG00015004895	swt1	57	40.000	Scleropages_formosus
MGP_PahariEiJ_G0027928	Swt1	64	46.250	ENSSDUG00000012345	swt1	58	35.726	Seriola_dumerili
MGP_PahariEiJ_G0027928	Swt1	64	46.250	ENSSLDG00000003821	swt1	58	35.043	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0027928	Swt1	70	81.143	ENSSARG00000011524	-	99	50.193	Sorex_araneus
MGP_PahariEiJ_G0027928	Swt1	70	58.523	ENSSPUG00000003899	SWT1	75	50.508	Sphenodon_punctatus
MGP_PahariEiJ_G0027928	Swt1	64	43.750	ENSSPAG00000001030	swt1	58	33.910	Stegastes_partitus
MGP_PahariEiJ_G0027928	Swt1	99	68.145	ENSSSCG00000015569	SWT1	100	72.284	Sus_scrofa
MGP_PahariEiJ_G0027928	Swt1	63	62.420	ENSTGUG00000003718	-	100	53.654	Taeniopygia_guttata
MGP_PahariEiJ_G0027928	Swt1	70	42.045	ENSTRUG00000006420	swt1	70	34.269	Takifugu_rubripes
MGP_PahariEiJ_G0027928	Swt1	56	83.871	ENSTBEG00000016891	-	54	83.871	Tupaia_belangeri
MGP_PahariEiJ_G0027928	Swt1	98	69.426	ENSTTRG00000005914	SWT1	100	68.433	Tursiops_truncatus
MGP_PahariEiJ_G0027928	Swt1	98	69.878	ENSUAMG00000020937	SWT1	98	73.236	Ursus_americanus
MGP_PahariEiJ_G0027928	Swt1	98	69.878	ENSUMAG00000021918	SWT1	100	69.878	Ursus_maritimus
MGP_PahariEiJ_G0027928	Swt1	90	81.324	ENSVPAG00000011855	SWT1	92	81.324	Vicugna_pacos
MGP_PahariEiJ_G0027928	Swt1	98	71.018	ENSVVUG00000009182	SWT1	100	70.575	Vulpes_vulpes
MGP_PahariEiJ_G0027928	Swt1	71	44.693	ENSXMAG00000023472	-	61	34.494	Xiphophorus_maculatus