EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0027940 (Gene tree)
Gene ID: 110322315
Gene Symbol: Smg7
Alias: 9430023P16Rik
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 59920 bases
Position: chr5:125866628-125926547
Accession: 110322315
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0075656	EST1	PF10374.9	5.5e-25	1	1
MGP_PahariEiJ_P0075658	EST1	PF10374.9	5.5e-25	1	1
MGP_PahariEiJ_P0075657	EST1	PF10374.9	5.5e-25	1	1
MGP_PahariEiJ_P0075656	EST1_DNA_bind	PF10373.9	3.3e-55	1	1
MGP_PahariEiJ_P0075658	EST1_DNA_bind	PF10373.9	3.3e-55	1	1
MGP_PahariEiJ_P0075657	EST1_DNA_bind	PF10373.9	3.4e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0075661	-	547	-	-	- (aa)	-	-
MGP_PahariEiJ_T0075660	-	678	-	-	- (aa)	-	-
MGP_PahariEiJ_T0075658	-	3932	XM_021198936	MGP_PahariEiJ_P0075658	1140 (aa)	XP_021054595	UPI000A309B36
MGP_PahariEiJ_T0075659	-	573	-	-	- (aa)	-	-
MGP_PahariEiJ_T0075656	-	5715	XM_021198937	MGP_PahariEiJ_P0075656	1136 (aa)	XP_021054596	UPI000A30C8D2
MGP_PahariEiJ_T0075657	-	5740	XM_021198933	MGP_PahariEiJ_P0075657	1148 (aa)	XP_021054592	UPI000A30A03B

Gene Model

Click here to download MGP_PahariEiJ_G0027940's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0027940's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0027940	Smg7	100	96.084	ENSG00000116698	SMG7	100	96.429	Homo_sapiens
MGP_PahariEiJ_G0027940	Smg7	89	73.204	ENSAPOG00000009611	smg7	95	73.828	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0027940	Smg7	99	93.977	ENSAMEG00000002357	SMG7	99	93.888	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0027940	Smg7	97	63.904	ENSACIG00000015152	smg7	98	67.123	Amphilophus_citrinellus
MGP_PahariEiJ_G0027940	Smg7	99	65.697	ENSAOCG00000013538	smg7	99	66.039	Amphiprion_ocellaris
MGP_PahariEiJ_G0027940	Smg7	99	65.556	ENSAPEG00000007851	smg7	99	65.897	Amphiprion_percula
MGP_PahariEiJ_G0027940	Smg7	99	65.110	ENSATEG00000006931	smg7	99	65.620	Anabas_testudineus
MGP_PahariEiJ_G0027940	Smg7	100	87.139	ENSAPLG00000015811	SMG7	100	86.964	Anas_platyrhynchos
MGP_PahariEiJ_G0027940	Smg7	100	83.793	ENSACAG00000014989	SMG7	100	84.043	Anolis_carolinensis
MGP_PahariEiJ_G0027940	Smg7	100	94.723	ENSANAG00000028114	SMG7	100	94.723	Aotus_nancymaae
MGP_PahariEiJ_G0027940	Smg7	99	64.826	ENSACLG00000022079	smg7	99	65.523	Astatotilapia_calliptera
MGP_PahariEiJ_G0027940	Smg7	99	66.870	ENSAMXG00000020809	smg7	99	67.159	Astyanax_mexicanus
MGP_PahariEiJ_G0027940	Smg7	100	94.952	ENSBTAG00000008003	SMG7	100	94.195	Bos_taurus
MGP_PahariEiJ_G0027940	Smg7	100	95.735	ENSCJAG00000005135	SMG7	99	95.735	Callithrix_jacchus
MGP_PahariEiJ_G0027940	Smg7	100	95.387	ENSCAFG00000013276	SMG7	98	95.561	Canis_familiaris
MGP_PahariEiJ_G0027940	Smg7	100	95.387	ENSCAFG00020015475	SMG7	98	95.561	Canis_lupus_dingo
MGP_PahariEiJ_G0027940	Smg7	99	94.793	ENSCHIG00000018192	SMG7	99	94.793	Capra_hircus
MGP_PahariEiJ_G0027940	Smg7	100	95.126	ENSTSYG00000002667	SMG7	100	94.283	Carlito_syrichta
MGP_PahariEiJ_G0027940	Smg7	100	95.561	ENSCPOG00000008906	SMG7	99	95.735	Cavia_porcellus
MGP_PahariEiJ_G0027940	Smg7	100	94.811	ENSCCAG00000028596	SMG7	100	94.811	Cebus_capucinus
MGP_PahariEiJ_G0027940	Smg7	100	96.258	ENSCATG00000011063	SMG7	100	95.251	Cercocebus_atys
MGP_PahariEiJ_G0027940	Smg7	100	95.387	ENSCLAG00000010751	SMG7	100	95.387	Chinchilla_lanigera
MGP_PahariEiJ_G0027940	Smg7	100	96.171	ENSCSAG00000012654	SMG7	98	96.171	Chlorocebus_sabaeus
MGP_PahariEiJ_G0027940	Smg7	92	87.297	ENSCHOG00000010522	SMG7	93	87.584	Choloepus_hoffmanni
MGP_PahariEiJ_G0027940	Smg7	100	89.658	ENSCPBG00000015724	SMG7	100	89.395	Chrysemys_picta_bellii
MGP_PahariEiJ_G0027940	Smg7	99	95.124	ENSCANG00000015680	SMG7	99	95.124	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0027940	Smg7	100	98.258	ENSCGRG00001013705	Smg7	100	98.246	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0027940	Smg7	100	98.258	ENSCGRG00000018401	Smg7	100	98.258	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0027940	Smg7	95	69.000	ENSCVAG00000011842	smg7	99	68.500	Cyprinodon_variegatus
MGP_PahariEiJ_G0027940	Smg7	99	66.724	ENSDARG00000060767	smg7	99	66.811	Danio_rerio
MGP_PahariEiJ_G0027940	Smg7	100	95.126	ENSDORG00000007331	Smg7	100	95.126	Dipodomys_ordii
MGP_PahariEiJ_G0027940	Smg7	97	94.203	ENSETEG00000002654	SMG7	100	94.203	Echinops_telfairi
MGP_PahariEiJ_G0027940	Smg7	100	96.144	ENSEASG00005006524	SMG7	100	96.144	Equus_asinus_asinus
MGP_PahariEiJ_G0027940	Smg7	100	96.056	ENSECAG00000004313	SMG7	100	96.056	Equus_caballus
MGP_PahariEiJ_G0027940	Smg7	97	94.208	ENSEEUG00000002024	SMG7	94	94.208	Erinaceus_europaeus
MGP_PahariEiJ_G0027940	Smg7	99	65.045	ENSELUG00000010293	smg7	99	65.252	Esox_lucius
MGP_PahariEiJ_G0027940	Smg7	100	95.618	ENSFCAG00000010900	SMG7	100	95.793	Felis_catus
MGP_PahariEiJ_G0027940	Smg7	98	82.483	ENSFALG00000003047	SMG7	100	82.398	Ficedula_albicollis
MGP_PahariEiJ_G0027940	Smg7	99	95.431	ENSFDAG00000012121	SMG7	99	95.897	Fukomys_damarensis
MGP_PahariEiJ_G0027940	Smg7	99	64.182	ENSFHEG00000011073	smg7	99	63.636	Fundulus_heteroclitus
MGP_PahariEiJ_G0027940	Smg7	96	56.178	ENSGMOG00000004916	smg7	92	67.299	Gadus_morhua
MGP_PahariEiJ_G0027940	Smg7	100	87.762	ENSGALG00000004667	SMG7	100	87.587	Gallus_gallus
MGP_PahariEiJ_G0027940	Smg7	99	64.175	ENSGAFG00000019000	smg7	99	64.003	Gambusia_affinis
MGP_PahariEiJ_G0027940	Smg7	97	64.336	ENSGACG00000001634	smg7	99	64.629	Gasterosteus_aculeatus
MGP_PahariEiJ_G0027940	Smg7	100	96.171	ENSGGOG00000002342	SMG7	100	95.163	Gorilla_gorilla
MGP_PahariEiJ_G0027940	Smg7	99	64.657	ENSHBUG00000003726	smg7	97	72.081	Haplochromis_burtoni
MGP_PahariEiJ_G0027940	Smg7	100	94.547	ENSHGLG00000009353	SMG7	100	95.633	Heterocephalus_glaber_female
MGP_PahariEiJ_G0027940	Smg7	100	87.993	ENSHGLG00100004878	-	100	87.993	Heterocephalus_glaber_male
MGP_PahariEiJ_G0027940	Smg7	100	94.635	ENSHGLG00100009637	-	100	94.635	Heterocephalus_glaber_male
MGP_PahariEiJ_G0027940	Smg7	99	67.539	ENSIPUG00000016997	smg7	99	67.801	Ictalurus_punctatus
MGP_PahariEiJ_G0027940	Smg7	100	96.258	ENSSTOG00000000401	SMG7	100	96.258	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0027940	Smg7	100	95.088	ENSJJAG00000012351	Smg7	100	95.088	Jaculus_jaculus
MGP_PahariEiJ_G0027940	Smg7	90	69.500	ENSKMAG00000004900	smg7	97	69.500	Kryptolebias_marmoratus
MGP_PahariEiJ_G0027940	Smg7	52	62.167	ENSLBEG00000005220	-	75	64.273	Labrus_bergylta
MGP_PahariEiJ_G0027940	Smg7	99	65.401	ENSLBEG00000002983	smg7	99	65.660	Labrus_bergylta
MGP_PahariEiJ_G0027940	Smg7	99	75.434	ENSLACG00000000972	SMG7	99	75.326	Latimeria_chalumnae
MGP_PahariEiJ_G0027940	Smg7	99	67.391	ENSLOCG00000002010	smg7	99	67.809	Lepisosteus_oculatus
MGP_PahariEiJ_G0027940	Smg7	100	95.474	ENSLAFG00000008186	SMG7	100	95.474	Loxodonta_africana
MGP_PahariEiJ_G0027940	Smg7	100	96.345	ENSMFAG00000031653	SMG7	100	96.319	Macaca_fascicularis
MGP_PahariEiJ_G0027940	Smg7	100	96.258	ENSMMUG00000018458	SMG7	98	96.258	Macaca_mulatta
MGP_PahariEiJ_G0027940	Smg7	100	95.251	ENSMNEG00000034798	SMG7	100	95.251	Macaca_nemestrina
MGP_PahariEiJ_G0027940	Smg7	100	96.258	ENSMLEG00000037170	SMG7	100	95.251	Mandrillus_leucophaeus
MGP_PahariEiJ_G0027940	Smg7	88	65.247	ENSMAMG00000018733	smg7	85	64.922	Mastacembelus_armatus
MGP_PahariEiJ_G0027940	Smg7	99	65.299	ENSMZEG00005015247	smg7	99	65.523	Maylandia_zebra
MGP_PahariEiJ_G0027940	Smg7	99	87.544	ENSMGAG00000001561	SMG7	99	87.367	Meleagris_gallopavo
MGP_PahariEiJ_G0027940	Smg7	100	98.432	ENSMAUG00000019484	Smg7	100	98.432	Mesocricetus_auratus
MGP_PahariEiJ_G0027940	Smg7	100	95.997	ENSMICG00000007145	SMG7	100	95.997	Microcebus_murinus
MGP_PahariEiJ_G0027940	Smg7	100	98.258	ENSMOCG00000020748	Smg7	100	98.258	Microtus_ochrogaster
MGP_PahariEiJ_G0027940	Smg7	99	64.211	ENSMMOG00000001524	smg7	99	64.292	Mola_mola
MGP_PahariEiJ_G0027940	Smg7	92	91.082	ENSMODG00000007139	SMG7	99	91.082	Monodelphis_domestica
MGP_PahariEiJ_G0027940	Smg7	99	64.863	ENSMALG00000000061	smg7	93	67.164	Monopterus_albus
MGP_PahariEiJ_G0027940	Smg7	100	99.216	MGP_CAROLIEiJ_G0014704	Smg7	100	99.216	Mus_caroli
MGP_PahariEiJ_G0027940	Smg7	100	99.129	ENSMUSG00000042772	Smg7	100	99.129	Mus_musculus
MGP_PahariEiJ_G0027940	Smg7	100	99.216	MGP_SPRETEiJ_G0015511	Smg7	100	99.216	Mus_spretus
MGP_PahariEiJ_G0027940	Smg7	98	95.276	ENSMPUG00000011732	SMG7	97	95.455	Mustela_putorius_furo
MGP_PahariEiJ_G0027940	Smg7	99	95.057	ENSMLUG00000015417	SMG7	99	95.057	Myotis_lucifugus
MGP_PahariEiJ_G0027940	Smg7	100	96.951	ENSNGAG00000009836	Smg7	100	96.951	Nannospalax_galili
MGP_PahariEiJ_G0027940	Smg7	98	60.870	ENSNBRG00000024343	smg7	98	70.000	Neolamprologus_brichardi
MGP_PahariEiJ_G0027940	Smg7	100	96.258	ENSNLEG00000018018	SMG7	100	95.251	Nomascus_leucogenys
MGP_PahariEiJ_G0027940	Smg7	77	85.290	ENSMEUG00000004681	SMG7	73	91.463	Notamacropus_eugenii
MGP_PahariEiJ_G0027940	Smg7	96	84.201	ENSOPRG00000013942	SMG7	96	83.927	Ochotona_princeps
MGP_PahariEiJ_G0027940	Smg7	100	95.648	ENSODEG00000010390	SMG7	100	95.648	Octodon_degus
MGP_PahariEiJ_G0027940	Smg7	99	64.437	ENSONIG00000000277	smg7	99	65.128	Oreochromis_niloticus
MGP_PahariEiJ_G0027940	Smg7	98	90.248	ENSOANG00000000994	SMG7	100	90.160	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0027940	Smg7	100	88.860	ENSOCUG00000005887	SMG7	94	89.034	Oryctolagus_cuniculus
MGP_PahariEiJ_G0027940	Smg7	99	63.149	ENSORLG00000007314	smg7	70	92.105	Oryzias_latipes
MGP_PahariEiJ_G0027940	Smg7	99	63.581	ENSORLG00020015779	smg7	99	63.495	Oryzias_latipes_hni
MGP_PahariEiJ_G0027940	Smg7	99	64.858	ENSORLG00015012289	smg7	99	63.103	Oryzias_latipes_hsok
MGP_PahariEiJ_G0027940	Smg7	99	62.594	ENSOMEG00000002328	smg7	99	62.719	Oryzias_melastigma
MGP_PahariEiJ_G0027940	Smg7	97	95.376	ENSOGAG00000003107	SMG7	94	95.558	Otolemur_garnettii
MGP_PahariEiJ_G0027940	Smg7	100	94.952	ENSOARG00000001352	SMG7	98	94.952	Ovis_aries
MGP_PahariEiJ_G0027940	Smg7	100	95.251	ENSPPAG00000031619	SMG7	100	95.251	Pan_paniscus
MGP_PahariEiJ_G0027940	Smg7	100	95.735	ENSPPRG00000011222	SMG7	100	94.371	Panthera_pardus
MGP_PahariEiJ_G0027940	Smg7	96	95.442	ENSPTIG00000007242	SMG7	100	91.354	Panthera_tigris_altaica
MGP_PahariEiJ_G0027940	Smg7	100	95.251	ENSPTRG00000001764	SMG7	100	95.251	Pan_troglodytes
MGP_PahariEiJ_G0027940	Smg7	100	96.258	ENSPANG00000004520	SMG7	100	95.251	Papio_anubis
MGP_PahariEiJ_G0027940	Smg7	99	64.442	ENSPKIG00000007242	smg7	99	68.500	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0027940	Smg7	99	90.733	ENSPSIG00000012201	SMG7	99	90.203	Pelodiscus_sinensis
MGP_PahariEiJ_G0027940	Smg7	71	42.705	ENSPMGG00000021833	smg7	89	54.000	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0027940	Smg7	100	97.300	ENSPEMG00000011315	Smg7	100	97.300	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0027940	Smg7	100	91.476	ENSPCIG00000003786	SMG7	100	91.301	Phascolarctos_cinereus
MGP_PahariEiJ_G0027940	Smg7	99	62.923	ENSPFOG00000019219	smg7	99	63.119	Poecilia_formosa
MGP_PahariEiJ_G0027940	Smg7	99	64.261	ENSPLAG00000001446	smg7	99	64.175	Poecilia_latipinna
MGP_PahariEiJ_G0027940	Smg7	96	63.443	ENSPMEG00000005218	smg7	99	63.354	Poecilia_mexicana
MGP_PahariEiJ_G0027940	Smg7	87	61.319	ENSPREG00000019039	smg7	91	61.259	Poecilia_reticulata
MGP_PahariEiJ_G0027940	Smg7	100	95.339	ENSPPYG00000000427	SMG7	100	95.339	Pongo_abelii
MGP_PahariEiJ_G0027940	Smg7	95	84.225	ENSPCAG00000008360	SMG7	95	83.424	Procavia_capensis
MGP_PahariEiJ_G0027940	Smg7	100	95.997	ENSPCOG00000011996	SMG7	98	95.997	Propithecus_coquereli
MGP_PahariEiJ_G0027940	Smg7	92	89.579	ENSPVAG00000000851	SMG7	89	89.904	Pteropus_vampyrus
MGP_PahariEiJ_G0027940	Smg7	99	65.378	ENSPNYG00000007643	smg7	99	65.292	Pundamilia_nyererei
MGP_PahariEiJ_G0027940	Smg7	99	67.418	ENSPNAG00000011374	smg7	99	66.898	Pygocentrus_nattereri
MGP_PahariEiJ_G0027940	Smg7	100	98.520	ENSRNOG00000027962	Smg7	100	98.940	Rattus_norvegicus
MGP_PahariEiJ_G0027940	Smg7	100	96.171	ENSRBIG00000036316	SMG7	100	95.163	Rhinopithecus_bieti
MGP_PahariEiJ_G0027940	Smg7	100	96.171	ENSRROG00000035719	SMG7	100	96.144	Rhinopithecus_roxellana
MGP_PahariEiJ_G0027940	Smg7	100	95.618	ENSSBOG00000023454	SMG7	100	95.618	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0027940	Smg7	100	91.133	ENSSHAG00000013147	SMG7	100	90.869	Sarcophilus_harrisii
MGP_PahariEiJ_G0027940	Smg7	99	68.614	ENSSFOG00015017252	smg7	99	75.263	Scleropages_formosus
MGP_PahariEiJ_G0027940	Smg7	99	65.142	ENSSMAG00000006067	smg7	99	65.202	Scophthalmus_maximus
MGP_PahariEiJ_G0027940	Smg7	95	71.349	ENSSDUG00000017543	smg7	99	65.262	Seriola_dumerili
MGP_PahariEiJ_G0027940	Smg7	99	88.339	ENSSPUG00000002064	SMG7	99	88.163	Sphenodon_punctatus
MGP_PahariEiJ_G0027940	Smg7	100	65.458	ENSSPAG00000008733	smg7	100	65.547	Stegastes_partitus
MGP_PahariEiJ_G0027940	Smg7	100	95.706	ENSSSCG00000015558	SMG7	100	95.706	Sus_scrofa
MGP_PahariEiJ_G0027940	Smg7	99	87.225	ENSTGUG00000003928	SMG7	100	87.137	Taeniopygia_guttata
MGP_PahariEiJ_G0027940	Smg7	99	63.583	ENSTNIG00000002802	smg7	99	63.460	Tetraodon_nigroviridis
MGP_PahariEiJ_G0027940	Smg7	77	94.492	ENSTBEG00000003220	SMG7	75	94.492	Tupaia_belangeri
MGP_PahariEiJ_G0027940	Smg7	96	95.434	ENSTTRG00000014778	SMG7	94	95.434	Tursiops_truncatus
MGP_PahariEiJ_G0027940	Smg7	96	91.416	ENSUAMG00000017473	SMG7	100	91.598	Ursus_americanus
MGP_PahariEiJ_G0027940	Smg7	96	95.450	ENSUMAG00000016389	SMG7	100	95.632	Ursus_maritimus
MGP_PahariEiJ_G0027940	Smg7	100	95.530	ENSVVUG00000008976	SMG7	100	95.706	Vulpes_vulpes
MGP_PahariEiJ_G0027940	Smg7	100	70.182	ENSXETG00000012528	smg7	100	69.896	Xenopus_tropicalis
MGP_PahariEiJ_G0027940	Smg7	99	64.200	ENSXMAG00000007123	smg7	99	64.372	Xiphophorus_maculatus