EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0028413 (Gene tree)
Gene ID: 110322848
Gene Symbol: Prpf4
Alias: 1600015H11Rik
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 17782 bases
Position: chr6:16334438-16352219
Accession: 110322848
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0077713	PRP4	PF08799.11	8.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0077713	-	5266	-	MGP_PahariEiJ_P0077713	521 (aa)	XP_021055360	UPI000A313842
MGP_PahariEiJ_T0077714	-	879	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0028413's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0028413's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0028413	Prpf4	56	30.000	MGP_PahariEiJ_G0015485	Poc1a	82	30.000
MGP_PahariEiJ_G0028413	Prpf4	56	32.479	MGP_PahariEiJ_G0031323	Poc1b	65	32.479

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0028413	Prpf4	100	98.848	ENSG00000136875	PRPF4	100	98.848	Homo_sapiens
MGP_PahariEiJ_G0028413	Prpf4	96	77.824	ENSAPOG00000014132	prpf4	98	77.824	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0028413	Prpf4	100	99.040	ENSAMEG00000013048	PRPF4	98	99.040	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0028413	Prpf4	96	77.183	ENSACIG00000005579	prpf4	99	77.183	Amphilophus_citrinellus
MGP_PahariEiJ_G0028413	Prpf4	96	77.228	ENSAOCG00000005457	prpf4	99	77.228	Amphiprion_ocellaris
MGP_PahariEiJ_G0028413	Prpf4	96	77.030	ENSAPEG00000000776	prpf4	99	77.030	Amphiprion_percula
MGP_PahariEiJ_G0028413	Prpf4	96	76.984	ENSATEG00000023013	prpf4	99	76.984	Anabas_testudineus
MGP_PahariEiJ_G0028413	Prpf4	100	88.484	ENSAPLG00000006534	PRPF4	97	88.484	Anas_platyrhynchos
MGP_PahariEiJ_G0028413	Prpf4	100	89.484	ENSACAG00000015110	PRPF4	100	89.484	Anolis_carolinensis
MGP_PahariEiJ_G0028413	Prpf4	100	99.232	ENSANAG00000022464	PRPF4	96	99.232	Aotus_nancymaae
MGP_PahariEiJ_G0028413	Prpf4	96	76.984	ENSACLG00000019031	prpf4	99	76.984	Astatotilapia_calliptera
MGP_PahariEiJ_G0028413	Prpf4	97	62.572	ENSAMXG00000006756	prpf4	99	73.861	Astyanax_mexicanus
MGP_PahariEiJ_G0028413	Prpf4	100	98.273	ENSBTAG00000004571	PRPF4	100	98.273	Bos_taurus
MGP_PahariEiJ_G0028413	Prpf4	90	44.000	WBGene00007972	prp-4	96	44.000	Caenorhabditis_elegans
MGP_PahariEiJ_G0028413	Prpf4	100	99.042	ENSCJAG00000017856	PRPF4	100	99.042	Callithrix_jacchus
MGP_PahariEiJ_G0028413	Prpf4	100	99.040	ENSCAFG00000003224	PRPF4	97	99.040	Canis_familiaris
MGP_PahariEiJ_G0028413	Prpf4	100	99.040	ENSCAFG00020022637	PRPF4	100	99.040	Canis_lupus_dingo
MGP_PahariEiJ_G0028413	Prpf4	100	98.467	ENSCHIG00000024648	-	100	98.467	Capra_hircus
MGP_PahariEiJ_G0028413	Prpf4	100	98.848	ENSTSYG00000010366	PRPF4	100	98.848	Carlito_syrichta
MGP_PahariEiJ_G0028413	Prpf4	88	88.067	ENSCAPG00000008935	PRPF4	97	88.067	Cavia_aperea
MGP_PahariEiJ_G0028413	Prpf4	100	91.939	ENSCPOG00000014729	-	100	91.939	Cavia_porcellus
MGP_PahariEiJ_G0028413	Prpf4	100	98.464	ENSCPOG00000010747	-	100	98.464	Cavia_porcellus
MGP_PahariEiJ_G0028413	Prpf4	100	99.040	ENSCCAG00000028990	PRPF4	100	99.040	Cebus_capucinus
MGP_PahariEiJ_G0028413	Prpf4	100	98.848	ENSCATG00000021552	PRPF4	100	98.848	Cercocebus_atys
MGP_PahariEiJ_G0028413	Prpf4	100	98.656	ENSCLAG00000013448	PRPF4	100	98.656	Chinchilla_lanigera
MGP_PahariEiJ_G0028413	Prpf4	87	95.133	ENSCHOG00000007233	PRPF4	100	95.133	Choloepus_hoffmanni
MGP_PahariEiJ_G0028413	Prpf4	99	90.680	ENSCPBG00000019136	PRPF4	74	90.680	Chrysemys_picta_bellii
MGP_PahariEiJ_G0028413	Prpf4	96	59.055	ENSCING00000001299	-	97	58.416	Ciona_intestinalis
MGP_PahariEiJ_G0028413	Prpf4	96	57.341	ENSCSAVG00000009178	-	100	58.658	Ciona_savignyi
MGP_PahariEiJ_G0028413	Prpf4	100	99.040	ENSCANG00000003246	PRPF4	100	99.040	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0028413	Prpf4	100	99.616	ENSCGRG00001016992	Prpf4	100	99.616	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0028413	Prpf4	100	99.616	ENSCGRG00000017560	Prpf4	100	99.616	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0028413	Prpf4	97	75.842	ENSCSEG00000020451	prpf4	99	75.842	Cynoglossus_semilaevis
MGP_PahariEiJ_G0028413	Prpf4	97	79.802	ENSDARG00000067639	prpf4	99	79.802	Danio_rerio
MGP_PahariEiJ_G0028413	Prpf4	100	98.467	ENSDNOG00000013203	PRPF4	100	98.467	Dasypus_novemcinctus
MGP_PahariEiJ_G0028413	Prpf4	100	98.848	ENSDORG00000026275	Prpf4	100	98.848	Dipodomys_ordii
MGP_PahariEiJ_G0028413	Prpf4	87	56.674	FBgn0036733	U4-U6-60K	99	50.547	Drosophila_melanogaster
MGP_PahariEiJ_G0028413	Prpf4	100	96.750	ENSETEG00000020389	PRPF4	100	96.750	Echinops_telfairi
MGP_PahariEiJ_G0028413	Prpf4	95	73.272	ENSEBUG00000015229	prpf4	86	73.733	Eptatretus_burgeri
MGP_PahariEiJ_G0028413	Prpf4	100	99.232	ENSEASG00005022678	PRPF4	100	99.232	Equus_asinus_asinus
MGP_PahariEiJ_G0028413	Prpf4	100	99.344	ENSECAG00000007072	PRPF4	100	99.232	Equus_caballus
MGP_PahariEiJ_G0028413	Prpf4	100	77.948	ENSEEUG00000007480	PRPF4	100	77.948	Erinaceus_europaeus
MGP_PahariEiJ_G0028413	Prpf4	97	80.990	ENSELUG00000007510	prpf4	99	80.990	Esox_lucius
MGP_PahariEiJ_G0028413	Prpf4	100	99.042	ENSFCAG00000005514	PRPF4	100	99.042	Felis_catus
MGP_PahariEiJ_G0028413	Prpf4	98	87.892	ENSFALG00000005423	PRPF4	90	85.161	Ficedula_albicollis
MGP_PahariEiJ_G0028413	Prpf4	100	98.464	ENSFDAG00000005839	PRPF4	100	98.464	Fukomys_damarensis
MGP_PahariEiJ_G0028413	Prpf4	96	76.389	ENSFHEG00000001300	prpf4	99	76.389	Fundulus_heteroclitus
MGP_PahariEiJ_G0028413	Prpf4	98	89.628	ENSGALG00000008857	PRPF4	96	88.953	Gallus_gallus
MGP_PahariEiJ_G0028413	Prpf4	65	71.471	ENSGAFG00000012164	prpf4	70	71.471	Gambusia_affinis
MGP_PahariEiJ_G0028413	Prpf4	96	70.040	ENSGACG00000015476	prpf4	99	69.246	Gasterosteus_aculeatus
MGP_PahariEiJ_G0028413	Prpf4	99	90.874	ENSGAGG00000025029	PRPF4	95	90.874	Gopherus_agassizii
MGP_PahariEiJ_G0028413	Prpf4	100	98.848	ENSGGOG00000006943	PRPF4	100	98.848	Gorilla_gorilla
MGP_PahariEiJ_G0028413	Prpf4	96	76.786	ENSHBUG00000000562	prpf4	99	76.786	Haplochromis_burtoni
MGP_PahariEiJ_G0028413	Prpf4	100	80.038	ENSHGLG00000003838	-	100	80.038	Heterocephalus_glaber_female
MGP_PahariEiJ_G0028413	Prpf4	100	81.262	ENSHGLG00000016628	-	100	82.027	Heterocephalus_glaber_female
MGP_PahariEiJ_G0028413	Prpf4	100	98.464	ENSHGLG00000015191	PRPF4	100	98.464	Heterocephalus_glaber_female
MGP_PahariEiJ_G0028413	Prpf4	100	80.038	ENSHGLG00100005571	-	100	80.038	Heterocephalus_glaber_male
MGP_PahariEiJ_G0028413	Prpf4	97	79.010	ENSIPUG00000017956	PRPF4	99	79.010	Ictalurus_punctatus
MGP_PahariEiJ_G0028413	Prpf4	100	98.656	ENSSTOG00000027833	PRPF4	100	98.656	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0028413	Prpf4	100	98.848	ENSJJAG00000008838	Prpf4	100	98.848	Jaculus_jaculus
MGP_PahariEiJ_G0028413	Prpf4	96	76.587	ENSKMAG00000013236	prpf4	99	76.587	Kryptolebias_marmoratus
MGP_PahariEiJ_G0028413	Prpf4	96	75.896	ENSLBEG00000020611	prpf4	99	75.896	Labrus_bergylta
MGP_PahariEiJ_G0028413	Prpf4	99	80.732	ENSLACG00000016317	PRPF4	99	80.732	Latimeria_chalumnae
MGP_PahariEiJ_G0028413	Prpf4	97	82.178	ENSLOCG00000000581	prpf4	99	82.178	Lepisosteus_oculatus
MGP_PahariEiJ_G0028413	Prpf4	100	98.467	ENSLAFG00000018225	PRPF4	100	98.467	Loxodonta_africana
MGP_PahariEiJ_G0028413	Prpf4	100	98.656	ENSMFAG00000039397	PRPF4	100	98.656	Macaca_fascicularis
MGP_PahariEiJ_G0028413	Prpf4	100	98.848	ENSMMUG00000005844	PRPF4	100	98.848	Macaca_mulatta
MGP_PahariEiJ_G0028413	Prpf4	100	88.484	ENSMNEG00000033737	PRPF4	100	88.484	Macaca_nemestrina
MGP_PahariEiJ_G0028413	Prpf4	100	98.848	ENSMLEG00000040284	PRPF4	100	98.848	Mandrillus_leucophaeus
MGP_PahariEiJ_G0028413	Prpf4	97	76.134	ENSMAMG00000020141	prpf4	99	76.134	Mastacembelus_armatus
MGP_PahariEiJ_G0028413	Prpf4	96	76.984	ENSMZEG00005023205	prpf4	99	76.984	Maylandia_zebra
MGP_PahariEiJ_G0028413	Prpf4	99	87.885	ENSMGAG00000001796	PRPF4	97	87.885	Meleagris_gallopavo
MGP_PahariEiJ_G0028413	Prpf4	100	99.040	ENSMAUG00000018022	Prpf4	100	99.040	Mesocricetus_auratus
MGP_PahariEiJ_G0028413	Prpf4	100	98.081	ENSMICG00000015022	PRPF4	100	97.893	Microcebus_murinus
MGP_PahariEiJ_G0028413	Prpf4	100	99.040	ENSMOCG00000018273	Prpf4	100	99.040	Microtus_ochrogaster
MGP_PahariEiJ_G0028413	Prpf4	97	75.248	ENSMMOG00000021177	prpf4	99	75.248	Mola_mola
MGP_PahariEiJ_G0028413	Prpf4	100	94.264	ENSMODG00000004444	-	100	94.264	Monodelphis_domestica
MGP_PahariEiJ_G0028413	Prpf4	100	94.837	ENSMODG00000025096	-	97	94.837	Monodelphis_domestica
MGP_PahariEiJ_G0028413	Prpf4	96	76.587	ENSMALG00000013624	prpf4	99	76.587	Monopterus_albus
MGP_PahariEiJ_G0028413	Prpf4	100	99.808	MGP_CAROLIEiJ_G0026078	Prpf4	100	99.808	Mus_caroli
MGP_PahariEiJ_G0028413	Prpf4	100	99.808	ENSMUSG00000066148	Prpf4	100	99.808	Mus_musculus
MGP_PahariEiJ_G0028413	Prpf4	100	99.808	MGP_SPRETEiJ_G0027042	Prpf4	100	99.808	Mus_spretus
MGP_PahariEiJ_G0028413	Prpf4	100	99.040	ENSMPUG00000007883	PRPF4	100	99.040	Mustela_putorius_furo
MGP_PahariEiJ_G0028413	Prpf4	100	96.737	ENSMLUG00000008626	-	97	96.737	Myotis_lucifugus
MGP_PahariEiJ_G0028413	Prpf4	100	98.656	ENSMLUG00000015309	-	97	98.656	Myotis_lucifugus
MGP_PahariEiJ_G0028413	Prpf4	100	93.474	ENSNGAG00000000468	Prpf4	100	93.474	Nannospalax_galili
MGP_PahariEiJ_G0028413	Prpf4	96	77.183	ENSNBRG00000007972	prpf4	99	77.183	Neolamprologus_brichardi
MGP_PahariEiJ_G0028413	Prpf4	100	99.232	ENSNLEG00000016647	PRPF4	100	99.232	Nomascus_leucogenys
MGP_PahariEiJ_G0028413	Prpf4	99	94.942	ENSMEUG00000013256	PRPF4	100	94.942	Notamacropus_eugenii
MGP_PahariEiJ_G0028413	Prpf4	100	98.276	ENSOPRG00000005302	PRPF4	100	98.276	Ochotona_princeps
MGP_PahariEiJ_G0028413	Prpf4	100	98.848	ENSODEG00000018147	PRPF4	100	98.848	Octodon_degus
MGP_PahariEiJ_G0028413	Prpf4	99	75.287	ENSONIG00000012671	prpf4	99	76.984	Oreochromis_niloticus
MGP_PahariEiJ_G0028413	Prpf4	100	99.040	ENSOCUG00000005046	PRPF4	100	99.040	Oryctolagus_cuniculus
MGP_PahariEiJ_G0028413	Prpf4	96	74.900	ENSORLG00000019641	prpf4	99	74.900	Oryzias_latipes
MGP_PahariEiJ_G0028413	Prpf4	96	74.900	ENSORLG00020019438	prpf4	99	74.900	Oryzias_latipes_hni
MGP_PahariEiJ_G0028413	Prpf4	96	74.737	ENSOMEG00000020941	prpf4	99	74.737	Oryzias_melastigma
MGP_PahariEiJ_G0028413	Prpf4	100	93.858	ENSOGAG00000007802	PRPF4	98	93.858	Otolemur_garnettii
MGP_PahariEiJ_G0028413	Prpf4	100	98.656	ENSOARG00000006319	PRPF4	97	98.656	Ovis_aries
MGP_PahariEiJ_G0028413	Prpf4	100	98.848	ENSPPAG00000041797	PRPF4	100	98.848	Pan_paniscus
MGP_PahariEiJ_G0028413	Prpf4	100	99.232	ENSPPRG00000014360	PRPF4	100	99.232	Panthera_pardus
MGP_PahariEiJ_G0028413	Prpf4	100	99.232	ENSPTIG00000009574	PRPF4	100	99.232	Panthera_tigris_altaica
MGP_PahariEiJ_G0028413	Prpf4	100	98.848	ENSPTRG00000021274	PRPF4	100	98.659	Pan_troglodytes
MGP_PahariEiJ_G0028413	Prpf4	100	98.656	ENSPANG00000025776	PRPF4	96	98.656	Papio_anubis
MGP_PahariEiJ_G0028413	Prpf4	97	81.584	ENSPKIG00000017259	prpf4	99	81.584	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0028413	Prpf4	100	89.251	ENSPSIG00000010713	PRPF4	90	90.802	Pelodiscus_sinensis
MGP_PahariEiJ_G0028413	Prpf4	99	58.545	ENSPMGG00000000997	prpf4	99	58.652	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0028413	Prpf4	100	99.616	ENSPEMG00000024115	Prpf4	100	99.616	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0028413	Prpf4	99	94.942	ENSPCIG00000003821	PRPF4	99	94.942	Phascolarctos_cinereus
MGP_PahariEiJ_G0028413	Prpf4	96	70.217	ENSPFOG00000013524	prpf4	98	73.292	Poecilia_formosa
MGP_PahariEiJ_G0028413	Prpf4	82	69.969	ENSPLAG00000011620	prpf4	96	72.360	Poecilia_latipinna
MGP_PahariEiJ_G0028413	Prpf4	92	74.398	ENSPMEG00000006813	prpf4	98	74.398	Poecilia_mexicana
MGP_PahariEiJ_G0028413	Prpf4	98	98.438	ENSPCAG00000002561	PRPF4	99	98.438	Procavia_capensis
MGP_PahariEiJ_G0028413	Prpf4	100	98.656	ENSPCOG00000011975	PRPF4	100	98.656	Propithecus_coquereli
MGP_PahariEiJ_G0028413	Prpf4	100	95.019	ENSPVAG00000004708	PRPF4	100	95.019	Pteropus_vampyrus
MGP_PahariEiJ_G0028413	Prpf4	96	76.984	ENSPNYG00000008013	prpf4	99	76.984	Pundamilia_nyererei
MGP_PahariEiJ_G0028413	Prpf4	97	80.792	ENSPNAG00000000697	prpf4	99	80.792	Pygocentrus_nattereri
MGP_PahariEiJ_G0028413	Prpf4	100	99.616	ENSRNOG00000014777	Prpf4	100	99.616	Rattus_norvegicus
MGP_PahariEiJ_G0028413	Prpf4	100	99.040	ENSRBIG00000040221	PRPF4	100	99.040	Rhinopithecus_bieti
MGP_PahariEiJ_G0028413	Prpf4	100	99.040	ENSRROG00000040240	PRPF4	100	99.040	Rhinopithecus_roxellana
MGP_PahariEiJ_G0028413	Prpf4	100	95.220	ENSSHAG00000017658	PRPF4	100	95.220	Sarcophilus_harrisii
MGP_PahariEiJ_G0028413	Prpf4	97	82.376	ENSSFOG00015008963	prpf4	99	82.376	Scleropages_formosus
MGP_PahariEiJ_G0028413	Prpf4	96	75.595	ENSSMAG00000008889	prpf4	99	75.595	Scophthalmus_maximus
MGP_PahariEiJ_G0028413	Prpf4	96	73.506	ENSSDUG00000022083	prpf4	98	73.705	Seriola_dumerili
MGP_PahariEiJ_G0028413	Prpf4	96	73.705	ENSSLDG00000008115	prpf4	98	73.904	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0028413	Prpf4	100	90.211	ENSSPUG00000015582	PRPF4	100	90.211	Sphenodon_punctatus
MGP_PahariEiJ_G0028413	Prpf4	96	71.006	ENSSPAG00000011286	prpf4	99	71.006	Stegastes_partitus
MGP_PahariEiJ_G0028413	Prpf4	100	99.232	ENSSSCG00000024648	PRPF4	100	99.232	Sus_scrofa
MGP_PahariEiJ_G0028413	Prpf4	95	90.061	ENSTGUG00000002623	PRPF4	100	90.389	Taeniopygia_guttata
MGP_PahariEiJ_G0028413	Prpf4	97	75.889	ENSTRUG00000008853	prpf4	99	75.889	Takifugu_rubripes
MGP_PahariEiJ_G0028413	Prpf4	97	75.248	ENSTNIG00000013250	prpf4	99	75.248	Tetraodon_nigroviridis
MGP_PahariEiJ_G0028413	Prpf4	100	90.038	ENSTBEG00000000821	PRPF4	100	90.038	Tupaia_belangeri
MGP_PahariEiJ_G0028413	Prpf4	82	98.658	ENSTTRG00000003246	PRPF4	85	98.658	Tursiops_truncatus
MGP_PahariEiJ_G0028413	Prpf4	64	95.808	ENSUAMG00000018288	PRPF4	90	95.808	Ursus_americanus
MGP_PahariEiJ_G0028413	Prpf4	100	98.273	ENSUMAG00000019375	PRPF4	100	98.273	Ursus_maritimus
MGP_PahariEiJ_G0028413	Prpf4	100	98.467	ENSVPAG00000005281	PRPF4	100	98.467	Vicugna_pacos
MGP_PahariEiJ_G0028413	Prpf4	100	97.905	ENSVVUG00000002476	PRPF4	100	97.905	Vulpes_vulpes
MGP_PahariEiJ_G0028413	Prpf4	69	58.056	ENSXCOG00000006101	prpf4	93	59.653	Xiphophorus_couchianus
MGP_PahariEiJ_G0028413	Prpf4	88	64.629	ENSXMAG00000002750	prpf4	98	65.606	Xiphophorus_maculatus