EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0028657 (Gene tree)
Gene ID: 110323680
Gene Symbol: Rad54l
Alias: RAD54
Full Name: RAD54 like
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 29395 bases
Position: chr6:67241323-67270717
Accession: 110323680
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0078853	ResIII	PF04851.15	2.1e-09	1	1
MGP_PahariEiJ_P0078854	ResIII	PF04851.15	2.1e-09	1	1
MGP_PahariEiJ_P0078853	DEAD	PF00270.29	8.4e-07	1	1
MGP_PahariEiJ_P0078854	DEAD	PF00270.29	8.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0078853	-	2763	XM_021201023	MGP_PahariEiJ_P0078853	746 (aa)	XP_021056682	UPI000A30B598
MGP_PahariEiJ_T0078852	-	4449	-	-	- (aa)	-	-
MGP_PahariEiJ_T0078855	-	651	-	-	- (aa)	-	-
MGP_PahariEiJ_T0078854	-	3011	-	MGP_PahariEiJ_P0078854	746 (aa)	-	UPI000A30B598

Gene Model

Click here to download MGP_PahariEiJ_G0028657's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0028657's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0028657	Rad54l	69	30.171	MGP_PahariEiJ_G0026845	Chd1l	52	30.469
MGP_PahariEiJ_G0028657	Rad54l	66	30.297	MGP_PahariEiJ_G0022198	Smarcad1	50	30.297
MGP_PahariEiJ_G0028657	Rad54l	66	32.866	MGP_PahariEiJ_G0031579	Smarca1	61	32.031
MGP_PahariEiJ_G0028657	Rad54l	88	45.036	MGP_PahariEiJ_G0023933	Rad54b	76	45.036

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0028657	Rad54l	99	94.370	ENSG00000085999	RAD54L	100	96.000	Homo_sapiens
MGP_PahariEiJ_G0028657	Rad54l	99	76.954	ENSAPOG00000011643	rad54l	99	76.954	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0028657	Rad54l	99	93.960	ENSAMEG00000013902	RAD54L	99	93.960	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0028657	Rad54l	99	77.285	ENSACIG00000001939	rad54l	99	77.285	Amphilophus_citrinellus
MGP_PahariEiJ_G0028657	Rad54l	99	79.919	ENSAOCG00000017576	rad54l	99	79.919	Amphiprion_ocellaris
MGP_PahariEiJ_G0028657	Rad54l	96	80.420	ENSAPEG00000020658	rad54l	98	80.420	Amphiprion_percula
MGP_PahariEiJ_G0028657	Rad54l	94	82.403	ENSATEG00000006767	rad54l	99	82.403	Anabas_testudineus
MGP_PahariEiJ_G0028657	Rad54l	94	85.897	ENSAPLG00000006389	RAD54L	99	85.897	Anas_platyrhynchos
MGP_PahariEiJ_G0028657	Rad54l	99	83.378	ENSACAG00000002312	RAD54L	99	83.378	Anolis_carolinensis
MGP_PahariEiJ_G0028657	Rad54l	99	93.834	ENSANAG00000035439	RAD54L	99	93.834	Aotus_nancymaae
MGP_PahariEiJ_G0028657	Rad54l	99	76.644	ENSACLG00000018711	rad54l	99	76.644	Astatotilapia_calliptera
MGP_PahariEiJ_G0028657	Rad54l	99	80.000	ENSAMXG00000012777	rad54l	99	80.000	Astyanax_mexicanus
MGP_PahariEiJ_G0028657	Rad54l	100	94.385	ENSBTAG00000019901	RAD54L	99	94.385	Bos_taurus
MGP_PahariEiJ_G0028657	Rad54l	93	58.250	WBGene00004298	rad-54	84	58.250	Caenorhabditis_elegans
MGP_PahariEiJ_G0028657	Rad54l	99	91.176	ENSCJAG00000021080	RAD54L	94	92.908	Callithrix_jacchus
MGP_PahariEiJ_G0028657	Rad54l	99	93.834	ENSCAFG00000004272	RAD54L	99	93.834	Canis_familiaris
MGP_PahariEiJ_G0028657	Rad54l	99	93.826	ENSCAFG00020015066	RAD54L	99	93.826	Canis_lupus_dingo
MGP_PahariEiJ_G0028657	Rad54l	99	94.110	ENSCHIG00000020118	RAD54L	99	94.110	Capra_hircus
MGP_PahariEiJ_G0028657	Rad54l	99	93.574	ENSTSYG00000002032	RAD54L	99	93.574	Carlito_syrichta
MGP_PahariEiJ_G0028657	Rad54l	100	94.511	ENSCPOG00000006768	RAD54L	99	94.511	Cavia_porcellus
MGP_PahariEiJ_G0028657	Rad54l	99	94.504	ENSCCAG00000025783	RAD54L	99	94.504	Cebus_capucinus
MGP_PahariEiJ_G0028657	Rad54l	99	94.236	ENSCATG00000030589	RAD54L	99	94.236	Cercocebus_atys
MGP_PahariEiJ_G0028657	Rad54l	100	94.913	ENSCLAG00000004645	RAD54L	99	94.913	Chinchilla_lanigera
MGP_PahariEiJ_G0028657	Rad54l	99	94.370	ENSCSAG00000001229	RAD54L	99	94.370	Chlorocebus_sabaeus
MGP_PahariEiJ_G0028657	Rad54l	99	85.408	ENSCPBG00000005675	RAD54L	99	85.408	Chrysemys_picta_bellii
MGP_PahariEiJ_G0028657	Rad54l	99	63.402	ENSCING00000024456	-	99	63.320	Ciona_intestinalis
MGP_PahariEiJ_G0028657	Rad54l	99	62.760	ENSCSAVG00000010859	-	99	62.939	Ciona_savignyi
MGP_PahariEiJ_G0028657	Rad54l	99	94.102	ENSCANG00000034891	RAD54L	99	94.102	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0028657	Rad54l	100	96.917	ENSCGRG00001014807	Rad54l	100	96.917	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0028657	Rad54l	100	96.917	ENSCGRG00000016038	Rad54l	100	96.917	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0028657	Rad54l	99	77.554	ENSCSEG00000001983	rad54l	99	77.554	Cynoglossus_semilaevis
MGP_PahariEiJ_G0028657	Rad54l	87	81.028	ENSCVAG00000019561	rad54l	99	81.028	Cyprinodon_variegatus
MGP_PahariEiJ_G0028657	Rad54l	99	78.926	ENSDARG00000018623	rad54l	99	78.926	Danio_rerio
MGP_PahariEiJ_G0028657	Rad54l	100	93.173	ENSDNOG00000003395	RAD54L	100	93.173	Dasypus_novemcinctus
MGP_PahariEiJ_G0028657	Rad54l	99	84.127	ENSDORG00000002632	Rad54l	99	84.127	Dipodomys_ordii
MGP_PahariEiJ_G0028657	Rad54l	99	55.305	FBgn0002989	okr	95	55.305	Drosophila_melanogaster
MGP_PahariEiJ_G0028657	Rad54l	78	94.355	ENSETEG00000000550	RAD54L	78	94.355	Echinops_telfairi
MGP_PahariEiJ_G0028657	Rad54l	99	93.960	ENSEASG00005004511	RAD54L	99	93.960	Equus_asinus_asinus
MGP_PahariEiJ_G0028657	Rad54l	99	94.370	ENSECAG00000008760	RAD54L	99	94.370	Equus_caballus
MGP_PahariEiJ_G0028657	Rad54l	100	87.684	ENSEEUG00000008113	RAD54L	100	87.684	Erinaceus_europaeus
MGP_PahariEiJ_G0028657	Rad54l	99	79.706	ENSELUG00000002295	rad54l	99	79.706	Esox_lucius
MGP_PahariEiJ_G0028657	Rad54l	100	93.173	ENSFCAG00000003444	RAD54L	100	93.173	Felis_catus
MGP_PahariEiJ_G0028657	Rad54l	99	84.450	ENSFALG00000009480	RAD54L	99	84.450	Ficedula_albicollis
MGP_PahariEiJ_G0028657	Rad54l	99	95.040	ENSFDAG00000007806	RAD54L	99	95.040	Fukomys_damarensis
MGP_PahariEiJ_G0028657	Rad54l	60	77.333	ENSFHEG00000009824	rad54l	77	77.333	Fundulus_heteroclitus
MGP_PahariEiJ_G0028657	Rad54l	99	78.495	ENSGMOG00000014568	rad54l	99	78.495	Gadus_morhua
MGP_PahariEiJ_G0028657	Rad54l	99	84.584	ENSGALG00000010356	RAD54L	92	84.584	Gallus_gallus
MGP_PahariEiJ_G0028657	Rad54l	91	77.696	ENSGAFG00000011110	rad54l	100	77.696	Gambusia_affinis
MGP_PahariEiJ_G0028657	Rad54l	99	78.820	ENSGACG00000003111	rad54l	97	78.820	Gasterosteus_aculeatus
MGP_PahariEiJ_G0028657	Rad54l	99	84.987	ENSGAGG00000014089	RAD54L	96	84.987	Gopherus_agassizii
MGP_PahariEiJ_G0028657	Rad54l	99	94.236	ENSGGOG00000010602	RAD54L	99	94.236	Gorilla_gorilla
MGP_PahariEiJ_G0028657	Rad54l	99	76.779	ENSHBUG00000007793	rad54l	99	76.779	Haplochromis_burtoni
MGP_PahariEiJ_G0028657	Rad54l	99	94.370	ENSHGLG00000000753	RAD54L	99	94.370	Heterocephalus_glaber_female
MGP_PahariEiJ_G0028657	Rad54l	99	94.236	ENSHGLG00100016987	RAD54L	99	94.236	Heterocephalus_glaber_male
MGP_PahariEiJ_G0028657	Rad54l	99	78.104	ENSIPUG00000015999	rad54l	99	80.973	Ictalurus_punctatus
MGP_PahariEiJ_G0028657	Rad54l	99	94.906	ENSSTOG00000029125	RAD54L	99	94.906	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0028657	Rad54l	99	82.282	ENSJJAG00000000235	-	99	82.148	Jaculus_jaculus
MGP_PahariEiJ_G0028657	Rad54l	99	78.062	ENSKMAG00000009944	rad54l	99	78.062	Kryptolebias_marmoratus
MGP_PahariEiJ_G0028657	Rad54l	99	80.350	ENSLBEG00000014617	rad54l	99	82.044	Labrus_bergylta
MGP_PahariEiJ_G0028657	Rad54l	99	80.805	ENSLOCG00000004144	rad54l	100	82.467	Lepisosteus_oculatus
MGP_PahariEiJ_G0028657	Rad54l	99	94.765	ENSLAFG00000007583	RAD54L	99	94.765	Loxodonta_africana
MGP_PahariEiJ_G0028657	Rad54l	99	94.236	ENSMFAG00000031241	RAD54L	99	94.236	Macaca_fascicularis
MGP_PahariEiJ_G0028657	Rad54l	99	94.236	ENSMMUG00000011568	RAD54L	99	94.236	Macaca_mulatta
MGP_PahariEiJ_G0028657	Rad54l	99	94.236	ENSMNEG00000038562	RAD54L	99	94.236	Macaca_nemestrina
MGP_PahariEiJ_G0028657	Rad54l	99	94.370	ENSMLEG00000038145	RAD54L	99	94.370	Mandrillus_leucophaeus
MGP_PahariEiJ_G0028657	Rad54l	99	79.223	ENSMAMG00000022180	rad54l	100	82.111	Mastacembelus_armatus
MGP_PahariEiJ_G0028657	Rad54l	99	76.510	ENSMZEG00005018081	rad54l	99	76.510	Maylandia_zebra
MGP_PahariEiJ_G0028657	Rad54l	99	84.564	ENSMGAG00000010634	RAD54L	99	84.564	Meleagris_gallopavo
MGP_PahariEiJ_G0028657	Rad54l	100	96.515	ENSMAUG00000020076	Rad54l	100	96.515	Mesocricetus_auratus
MGP_PahariEiJ_G0028657	Rad54l	99	95.710	ENSMICG00000003266	RAD54L	99	95.710	Microcebus_murinus
MGP_PahariEiJ_G0028657	Rad54l	100	97.319	ENSMOCG00000001778	Rad54l	100	97.319	Microtus_ochrogaster
MGP_PahariEiJ_G0028657	Rad54l	99	75.672	ENSMALG00000021148	rad54l	99	75.672	Monopterus_albus
MGP_PahariEiJ_G0028657	Rad54l	100	94.010	MGP_CAROLIEiJ_G0026325	Rad54l	100	94.010	Mus_caroli
MGP_PahariEiJ_G0028657	Rad54l	100	98.929	ENSMUSG00000028702	Rad54l	100	98.929	Mus_musculus
MGP_PahariEiJ_G0028657	Rad54l	100	98.795	MGP_SPRETEiJ_G0027297	Rad54l	100	98.795	Mus_spretus
MGP_PahariEiJ_G0028657	Rad54l	99	93.307	ENSMPUG00000012883	RAD54L	99	93.307	Mustela_putorius_furo
MGP_PahariEiJ_G0028657	Rad54l	99	94.765	ENSMLUG00000003763	RAD54L	99	94.765	Myotis_lucifugus
MGP_PahariEiJ_G0028657	Rad54l	100	94.511	ENSNGAG00000024213	Rad54l	100	94.511	Nannospalax_galili
MGP_PahariEiJ_G0028657	Rad54l	99	94.236	ENSNLEG00000016548	RAD54L	99	94.236	Nomascus_leucogenys
MGP_PahariEiJ_G0028657	Rad54l	91	84.024	ENSMEUG00000006793	RAD54L	99	84.024	Notamacropus_eugenii
MGP_PahariEiJ_G0028657	Rad54l	91	94.792	ENSOPRG00000016016	RAD54L	91	94.792	Ochotona_princeps
MGP_PahariEiJ_G0028657	Rad54l	100	95.181	ENSODEG00000008519	RAD54L	99	95.181	Octodon_degus
MGP_PahariEiJ_G0028657	Rad54l	99	76.644	ENSONIG00000007659	rad54l	99	76.644	Oreochromis_niloticus
MGP_PahariEiJ_G0028657	Rad54l	100	94.110	ENSOCUG00000005229	RAD54L	100	94.110	Oryctolagus_cuniculus
MGP_PahariEiJ_G0028657	Rad54l	99	78.091	ENSORLG00000002958	rad54l	99	78.495	Oryzias_latipes
MGP_PahariEiJ_G0028657	Rad54l	99	78.629	ENSORLG00020006554	rad54l	99	81.232	Oryzias_latipes_hni
MGP_PahariEiJ_G0028657	Rad54l	99	77.419	ENSORLG00015002907	rad54l	99	78.629	Oryzias_latipes_hsok
MGP_PahariEiJ_G0028657	Rad54l	99	78.629	ENSOMEG00000007770	rad54l	99	78.629	Oryzias_melastigma
MGP_PahariEiJ_G0028657	Rad54l	100	93.992	ENSOARG00000002264	RAD54L	99	93.992	Ovis_aries
MGP_PahariEiJ_G0028657	Rad54l	99	94.102	ENSPPAG00000031222	RAD54L	99	94.102	Pan_paniscus
MGP_PahariEiJ_G0028657	Rad54l	100	93.173	ENSPPRG00000010317	RAD54L	100	93.173	Panthera_pardus
MGP_PahariEiJ_G0028657	Rad54l	100	93.173	ENSPTIG00000012200	RAD54L	100	93.173	Panthera_tigris_altaica
MGP_PahariEiJ_G0028657	Rad54l	99	94.236	ENSPTRG00000000689	RAD54L	99	94.236	Pan_troglodytes
MGP_PahariEiJ_G0028657	Rad54l	99	94.370	ENSPANG00000016295	RAD54L	99	94.370	Papio_anubis
MGP_PahariEiJ_G0028657	Rad54l	99	76.851	ENSPKIG00000016172	rad54l	99	76.851	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0028657	Rad54l	99	85.230	ENSPSIG00000003258	RAD54L	99	85.230	Pelodiscus_sinensis
MGP_PahariEiJ_G0028657	Rad54l	99	75.168	ENSPMGG00000016335	rad54l	99	75.168	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0028657	Rad54l	100	97.051	ENSPEMG00000011422	Rad54l	100	97.051	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0028657	Rad54l	99	70.360	ENSPMAG00000007719	rad54l	99	70.360	Petromyzon_marinus
MGP_PahariEiJ_G0028657	Rad54l	99	86.863	ENSPCIG00000029032	RAD54L	99	86.863	Phascolarctos_cinereus
MGP_PahariEiJ_G0028657	Rad54l	85	81.141	ENSPFOG00000013732	rad54l	99	81.141	Poecilia_formosa
MGP_PahariEiJ_G0028657	Rad54l	82	79.221	ENSPLAG00000023416	rad54l	99	79.221	Poecilia_latipinna
MGP_PahariEiJ_G0028657	Rad54l	91	77.991	ENSPMEG00000008299	rad54l	100	77.991	Poecilia_mexicana
MGP_PahariEiJ_G0028657	Rad54l	99	76.510	ENSPREG00000019955	rad54l	99	76.510	Poecilia_reticulata
MGP_PahariEiJ_G0028657	Rad54l	94	92.730	ENSPPYG00000001398	RAD54L	99	92.730	Pongo_abelii
MGP_PahariEiJ_G0028657	Rad54l	80	93.204	ENSPCAG00000005323	RAD54L	80	93.204	Procavia_capensis
MGP_PahariEiJ_G0028657	Rad54l	100	95.315	ENSPCOG00000015423	RAD54L	100	95.315	Propithecus_coquereli
MGP_PahariEiJ_G0028657	Rad54l	99	73.174	ENSPNYG00000002942	rad54l	99	73.174	Pundamilia_nyererei
MGP_PahariEiJ_G0028657	Rad54l	99	79.329	ENSPNAG00000012483	rad54l	99	79.329	Pygocentrus_nattereri
MGP_PahariEiJ_G0028657	Rad54l	100	98.260	ENSRNOG00000013148	Rad54l	99	98.260	Rattus_norvegicus
MGP_PahariEiJ_G0028657	Rad54l	99	94.102	ENSRBIG00000043495	RAD54L	99	94.102	Rhinopithecus_bieti
MGP_PahariEiJ_G0028657	Rad54l	99	94.236	ENSRROG00000020844	RAD54L	99	94.236	Rhinopithecus_roxellana
MGP_PahariEiJ_G0028657	Rad54l	80	47.920	YGL163C	RAD54	71	48.382	Saccharomyces_cerevisiae
MGP_PahariEiJ_G0028657	Rad54l	99	94.504	ENSSBOG00000024672	RAD54L	99	94.504	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0028657	Rad54l	99	86.933	ENSSHAG00000000110	RAD54L	99	86.933	Sarcophilus_harrisii
MGP_PahariEiJ_G0028657	Rad54l	99	79.597	ENSSDUG00000019147	rad54l	99	79.597	Seriola_dumerili
MGP_PahariEiJ_G0028657	Rad54l	99	79.866	ENSSLDG00000012330	rad54l	99	79.866	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0028657	Rad54l	83	87.640	ENSSARG00000006689	RAD54L	100	87.640	Sorex_araneus
MGP_PahariEiJ_G0028657	Rad54l	99	79.273	ENSSPAG00000011016	rad54l	99	79.273	Stegastes_partitus
MGP_PahariEiJ_G0028657	Rad54l	99	93.700	ENSSSCG00000003905	RAD54L	99	93.700	Sus_scrofa
MGP_PahariEiJ_G0028657	Rad54l	99	83.780	ENSTGUG00000008233	RAD54L	99	83.914	Taeniopygia_guttata
MGP_PahariEiJ_G0028657	Rad54l	99	75.168	ENSTRUG00000008410	rad54l	99	75.168	Takifugu_rubripes
MGP_PahariEiJ_G0028657	Rad54l	99	75.436	ENSTNIG00000004716	rad54l	99	75.335	Tetraodon_nigroviridis
MGP_PahariEiJ_G0028657	Rad54l	100	85.542	ENSTTRG00000006315	RAD54L	100	85.542	Tursiops_truncatus
MGP_PahariEiJ_G0028657	Rad54l	99	93.657	ENSUAMG00000011824	RAD54L	99	93.657	Ursus_americanus
MGP_PahariEiJ_G0028657	Rad54l	99	92.578	ENSUMAG00000023603	RAD54L	99	92.578	Ursus_maritimus
MGP_PahariEiJ_G0028657	Rad54l	99	93.834	ENSVVUG00000007201	RAD54L	99	93.834	Vulpes_vulpes
MGP_PahariEiJ_G0028657	Rad54l	96	77.469	ENSXETG00000004369	rad54l	99	77.469	Xenopus_tropicalis
MGP_PahariEiJ_G0028657	Rad54l	55	74.453	ENSXCOG00000016028	rad54l	82	77.249	Xiphophorus_couchianus