EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0028818 (Gene tree)
Gene ID: 110323401
Gene Symbol: Sfpq
Alias: 1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|D4Ertd314e|PSF|REP1
Full Name: splicing factor proline and glutamine rich
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 15682 bases
Position: chr6:78078237-78093918
Accession: 110323401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0079554	RRM_1	PF00076.22	5.7e-30	1	2
MGP_PahariEiJ_P0079554	RRM_1	PF00076.22	5.7e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0079559	-	629	-	-	- (aa)	-	-
MGP_PahariEiJ_T0079558	-	959	-	-	- (aa)	-	-
MGP_PahariEiJ_T0079557	-	576	-	-	- (aa)	-	-
MGP_PahariEiJ_T0079556	-	924	-	-	- (aa)	-	-
MGP_PahariEiJ_T0079555	-	755	-	-	- (aa)	-	-
MGP_PahariEiJ_T0079554	-	3448	XM_021200596	MGP_PahariEiJ_P0079554	699 (aa)	XP_021056255	UPI000A30D78F

Gene Model

Click here to download MGP_PahariEiJ_G0028818's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0028818's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0028818	Sfpq	55	65.891	MGP_PahariEiJ_G0030359	Pspc1	84	71.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0028818	Sfpq	69	98.347	ENSG00000116560	SFPQ	97	99.074	Homo_sapiens
MGP_PahariEiJ_G0028818	Sfpq	62	74.596	ENSAPOG00000024257	sfpq	61	75.172	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0028818	Sfpq	63	99.318	ENSAMEG00000000815	SFPQ	100	99.318	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0028818	Sfpq	65	70.833	ENSACIG00000000905	sfpq	68	73.086	Amphilophus_citrinellus
MGP_PahariEiJ_G0028818	Sfpq	62	74.246	ENSAOCG00000002889	sfpq	60	74.312	Amphiprion_ocellaris
MGP_PahariEiJ_G0028818	Sfpq	62	74.246	ENSAPEG00000016556	sfpq	60	74.312	Amphiprion_percula
MGP_PahariEiJ_G0028818	Sfpq	66	73.763	ENSATEG00000002981	sfpq	67	76.082	Anabas_testudineus
MGP_PahariEiJ_G0028818	Sfpq	50	75.141	ENSANAG00000021268	-	100	74.074	Aotus_nancymaae
MGP_PahariEiJ_G0028818	Sfpq	50	76.000	ENSANAG00000037798	-	99	75.714	Aotus_nancymaae
MGP_PahariEiJ_G0028818	Sfpq	92	96.154	ENSANAG00000027438	-	68	82.766	Aotus_nancymaae
MGP_PahariEiJ_G0028818	Sfpq	63	72.624	ENSACLG00000022332	sfpq	63	72.851	Astatotilapia_calliptera
MGP_PahariEiJ_G0028818	Sfpq	63	69.977	ENSAMXG00000011538	sfpq	65	72.500	Astyanax_mexicanus
MGP_PahariEiJ_G0028818	Sfpq	69	98.347	ENSBTAG00000016328	SFPQ	85	90.803	Bos_taurus
MGP_PahariEiJ_G0028818	Sfpq	69	98.140	ENSCJAG00000001431	SFPQ	96	83.431	Callithrix_jacchus
MGP_PahariEiJ_G0028818	Sfpq	85	83.833	ENSCAFG00000018271	-	66	92.744	Canis_familiaris
MGP_PahariEiJ_G0028818	Sfpq	83	95.181	ENSCAFG00000003595	-	90	94.631	Canis_familiaris
MGP_PahariEiJ_G0028818	Sfpq	85	81.135	ENSCAFG00000017608	-	87	81.135	Canis_familiaris
MGP_PahariEiJ_G0028818	Sfpq	50	90.598	ENSCAFG00020010702	-	100	90.598	Canis_lupus_dingo
MGP_PahariEiJ_G0028818	Sfpq	85	83.694	ENSCAFG00020004881	-	66	92.744	Canis_lupus_dingo
MGP_PahariEiJ_G0028818	Sfpq	69	98.347	ENSCHIG00000023097	SFPQ	84	90.803	Capra_hircus
MGP_PahariEiJ_G0028818	Sfpq	50	99.430	ENSTSYG00000037120	-	100	99.430	Carlito_syrichta
MGP_PahariEiJ_G0028818	Sfpq	50	85.100	ENSTSYG00000035106	-	98	85.100	Carlito_syrichta
MGP_PahariEiJ_G0028818	Sfpq	50	90.883	ENSCPOG00000015018	-	100	88.981	Cavia_porcellus
MGP_PahariEiJ_G0028818	Sfpq	69	97.934	ENSCCAG00000029361	-	85	88.040	Cebus_capucinus
MGP_PahariEiJ_G0028818	Sfpq	69	72.301	ENSCATG00000032664	-	84	67.928	Cercocebus_atys
MGP_PahariEiJ_G0028818	Sfpq	61	94.811	ENSCATG00000036179	-	79	84.843	Cercocebus_atys
MGP_PahariEiJ_G0028818	Sfpq	50	99.430	ENSCLAG00000009583	-	100	99.430	Chinchilla_lanigera
MGP_PahariEiJ_G0028818	Sfpq	69	98.347	ENSCSAG00000001082	SFPQ	96	83.431	Chlorocebus_sabaeus
MGP_PahariEiJ_G0028818	Sfpq	54	94.737	ENSCHOG00000009131	SFPQ	100	94.737	Choloepus_hoffmanni
MGP_PahariEiJ_G0028818	Sfpq	63	93.213	ENSCPBG00000018674	SFPQ	68	92.986	Chrysemys_picta_bellii
MGP_PahariEiJ_G0028818	Sfpq	50	99.430	ENSCANG00000028087	-	100	99.430	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0028818	Sfpq	100	97.155	ENSCGRG00001011698	Sfpq	100	97.155	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0028818	Sfpq	62	100.000	ENSCGRG00000010128	Sfpq	95	100.000	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0028818	Sfpq	62	74.600	ENSCSEG00000007852	sfpq	65	73.550	Cynoglossus_semilaevis
MGP_PahariEiJ_G0028818	Sfpq	61	70.023	ENSCVAG00000019538	sfpq	64	67.371	Cyprinodon_variegatus
MGP_PahariEiJ_G0028818	Sfpq	63	71.526	ENSDARG00000011564	sfpq	100	83.478	Danio_rerio
MGP_PahariEiJ_G0028818	Sfpq	69	97.934	ENSDNOG00000049454	SFPQ	84	94.807	Dasypus_novemcinctus
MGP_PahariEiJ_G0028818	Sfpq	69	98.347	ENSDORG00000008109	Sfpq	85	95.477	Dipodomys_ordii
MGP_PahariEiJ_G0028818	Sfpq	62	92.575	ENSETEG00000001095	SFPQ	61	92.575	Echinops_telfairi
MGP_PahariEiJ_G0028818	Sfpq	79	94.565	ENSEASG00005012012	SFPQ	84	94.975	Equus_asinus_asinus
MGP_PahariEiJ_G0028818	Sfpq	79	94.565	ENSECAG00000000642	SFPQ	84	94.975	Equus_caballus
MGP_PahariEiJ_G0028818	Sfpq	62	72.917	ENSELUG00000023145	sfpq	66	71.694	Esox_lucius
MGP_PahariEiJ_G0028818	Sfpq	85	95.142	ENSFCAG00000042862	SFPQ	85	95.142	Felis_catus
MGP_PahariEiJ_G0028818	Sfpq	50	94.587	ENSFALG00000000731	SFPQ	100	94.587	Ficedula_albicollis
MGP_PahariEiJ_G0028818	Sfpq	50	90.313	ENSFDAG00000017723	-	100	90.652	Fukomys_damarensis
MGP_PahariEiJ_G0028818	Sfpq	62	67.126	ENSFHEG00000015200	sfpq	56	68.736	Fundulus_heteroclitus
MGP_PahariEiJ_G0028818	Sfpq	62	74.943	ENSGMOG00000011950	SFPQ	74	75.000	Gadus_morhua
MGP_PahariEiJ_G0028818	Sfpq	68	68.399	ENSGMOG00000011957	sfpq	65	73.782	Gadus_morhua
MGP_PahariEiJ_G0028818	Sfpq	98	51.149	ENSGAFG00000014571	sfpq	57	77.607	Gambusia_affinis
MGP_PahariEiJ_G0028818	Sfpq	80	62.248	ENSGACG00000002034	sfpq	68	74.654	Gasterosteus_aculeatus
MGP_PahariEiJ_G0028818	Sfpq	75	99.076	ENSGGOG00000026354	SFPQ	100	99.430	Gorilla_gorilla
MGP_PahariEiJ_G0028818	Sfpq	63	72.297	ENSHBUG00000016818	sfpq	63	72.851	Haplochromis_burtoni
MGP_PahariEiJ_G0028818	Sfpq	68	98.129	ENSHGLG00000012001	SFPQ	86	91.000	Heterocephalus_glaber_female
MGP_PahariEiJ_G0028818	Sfpq	50	99.430	ENSHGLG00100004136	-	100	99.430	Heterocephalus_glaber_male
MGP_PahariEiJ_G0028818	Sfpq	64	72.991	ENSHCOG00000008612	sfpq	70	68.372	Hippocampus_comes
MGP_PahariEiJ_G0028818	Sfpq	65	69.248	ENSIPUG00000013076	SFPQ	73	72.540	Ictalurus_punctatus
MGP_PahariEiJ_G0028818	Sfpq	50	99.430	ENSSTOG00000014004	-	100	99.430	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0028818	Sfpq	69	98.554	ENSJJAG00000015633	Sfpq	85	93.322	Jaculus_jaculus
MGP_PahariEiJ_G0028818	Sfpq	92	55.640	ENSKMAG00000000238	sfpq	54	71.034	Kryptolebias_marmoratus
MGP_PahariEiJ_G0028818	Sfpq	62	76.256	ENSLACG00000014728	SFPQ	70	80.324	Latimeria_chalumnae
MGP_PahariEiJ_G0028818	Sfpq	90	62.290	ENSLOCG00000001067	sfpq	68	81.912	Lepisosteus_oculatus
MGP_PahariEiJ_G0028818	Sfpq	97	86.854	ENSLAFG00000015951	SFPQ	92	92.965	Loxodonta_africana
MGP_PahariEiJ_G0028818	Sfpq	69	98.140	ENSMFAG00000000797	SFPQ	85	88.372	Macaca_fascicularis
MGP_PahariEiJ_G0028818	Sfpq	69	98.140	ENSMMUG00000019154	SFPQ	85	88.372	Macaca_mulatta
MGP_PahariEiJ_G0028818	Sfpq	69	98.347	ENSMNEG00000038895	SFPQ	85	88.538	Macaca_nemestrina
MGP_PahariEiJ_G0028818	Sfpq	50	96.296	ENSMLEG00000010643	-	100	96.296	Mandrillus_leucophaeus
MGP_PahariEiJ_G0028818	Sfpq	76	68.097	ENSMAMG00000007875	sfpq	66	77.726	Mastacembelus_armatus
MGP_PahariEiJ_G0028818	Sfpq	90	54.009	ENSMZEG00005026091	sfpq	64	72.851	Maylandia_zebra
MGP_PahariEiJ_G0028818	Sfpq	54	91.049	ENSMGAG00000004237	SFPQ	100	91.049	Meleagris_gallopavo
MGP_PahariEiJ_G0028818	Sfpq	100	97.155	ENSMAUG00000006402	Sfpq	100	97.155	Mesocricetus_auratus
MGP_PahariEiJ_G0028818	Sfpq	69	98.347	ENSMICG00000027265	SFPQ	85	91.348	Microcebus_murinus
MGP_PahariEiJ_G0028818	Sfpq	69	95.652	ENSMOCG00000019075	Sfpq	100	95.652	Microtus_ochrogaster
MGP_PahariEiJ_G0028818	Sfpq	77	65.209	ENSMMOG00000001074	sfpq	65	74.651	Mola_mola
MGP_PahariEiJ_G0028818	Sfpq	64	95.291	ENSMODG00000017937	SFPQ	72	93.595	Monodelphis_domestica
MGP_PahariEiJ_G0028818	Sfpq	62	75.116	ENSMALG00000010381	sfpq	64	75.584	Monopterus_albus
MGP_PahariEiJ_G0028818	Sfpq	100	99.000	MGP_CAROLIEiJ_G0026487	Sfpq	100	99.000	Mus_caroli
MGP_PahariEiJ_G0028818	Sfpq	100	99.142	ENSMUSG00000028820	Sfpq	100	99.142	Mus_musculus
MGP_PahariEiJ_G0028818	Sfpq	100	99.142	MGP_SPRETEiJ_G0027466	Sfpq	100	99.142	Mus_spretus
MGP_PahariEiJ_G0028818	Sfpq	64	96.444	ENSMLUG00000027090	SFPQ	100	96.444	Myotis_lucifugus
MGP_PahariEiJ_G0028818	Sfpq	85	93.833	ENSNGAG00000000888	Sfpq	78	96.909	Nannospalax_galili
MGP_PahariEiJ_G0028818	Sfpq	81	60.374	ENSNBRG00000017479	sfpq	64	73.077	Neolamprologus_brichardi
MGP_PahariEiJ_G0028818	Sfpq	50	99.430	ENSNLEG00000035521	-	100	99.430	Nomascus_leucogenys
MGP_PahariEiJ_G0028818	Sfpq	66	95.900	ENSMEUG00000014082	SFPQ	63	95.238	Notamacropus_eugenii
MGP_PahariEiJ_G0028818	Sfpq	73	93.294	ENSOPRG00000013696	SFPQ	68	96.234	Ochotona_princeps
MGP_PahariEiJ_G0028818	Sfpq	66	87.013	ENSODEG00000005485	SFPQ	85	86.422	Octodon_degus
MGP_PahariEiJ_G0028818	Sfpq	63	73.423	ENSONIG00000017737	sfpq	63	73.982	Oreochromis_niloticus
MGP_PahariEiJ_G0028818	Sfpq	50	96.866	ENSOANG00000008789	-	100	96.866	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0028818	Sfpq	73	89.443	ENSOCUG00000001877	SFPQ	92	93.958	Oryctolagus_cuniculus
MGP_PahariEiJ_G0028818	Sfpq	83	56.894	ENSORLG00000007459	sfpq	57	71.694	Oryzias_latipes
MGP_PahariEiJ_G0028818	Sfpq	82	56.984	ENSORLG00020011818	sfpq	57	71.694	Oryzias_latipes_hni
MGP_PahariEiJ_G0028818	Sfpq	82	56.916	ENSORLG00015002131	sfpq	58	71.034	Oryzias_latipes_hsok
MGP_PahariEiJ_G0028818	Sfpq	99	52.225	ENSOMEG00000018020	sfpq	58	70.295	Oryzias_melastigma
MGP_PahariEiJ_G0028818	Sfpq	76	96.408	ENSOGAG00000027710	SFPQ	100	96.408	Otolemur_garnettii
MGP_PahariEiJ_G0028818	Sfpq	62	99.306	ENSOARG00000019439	SFPQ	66	99.306	Ovis_aries
MGP_PahariEiJ_G0028818	Sfpq	50	99.148	ENSPPRG00000015478	-	100	99.148	Panthera_pardus
MGP_PahariEiJ_G0028818	Sfpq	50	99.430	ENSPTIG00000007710	-	100	99.430	Panthera_tigris_altaica
MGP_PahariEiJ_G0028818	Sfpq	69	92.149	ENSPTRG00000000518	SFPQ	84	83.555	Pan_troglodytes
MGP_PahariEiJ_G0028818	Sfpq	78	66.241	ENSPKIG00000023035	sfpq	73	79.493	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0028818	Sfpq	62	94.664	ENSPSIG00000011494	SFPQ	100	94.664	Pelodiscus_sinensis
MGP_PahariEiJ_G0028818	Sfpq	61	69.249	ENSPMGG00000023883	sfpq	69	68.779	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0028818	Sfpq	67	99.151	ENSPEMG00000009794	Sfpq	97	99.151	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0028818	Sfpq	64	95.516	ENSPCIG00000000923	SFPQ	69	93.595	Phascolarctos_cinereus
MGP_PahariEiJ_G0028818	Sfpq	86	55.644	ENSPFOG00000003127	sfpq	71	68.360	Poecilia_formosa
MGP_PahariEiJ_G0028818	Sfpq	69	98.347	ENSPPYG00000001560	SFPQ	85	88.538	Pongo_abelii
MGP_PahariEiJ_G0028818	Sfpq	77	98.368	ENSPCAG00000006164	SFPQ	77	98.368	Procavia_capensis
MGP_PahariEiJ_G0028818	Sfpq	69	98.347	ENSPCOG00000027127	SFPQ	96	87.482	Propithecus_coquereli
MGP_PahariEiJ_G0028818	Sfpq	96	91.691	ENSPVAG00000001865	SFPQ	85	92.797	Pteropus_vampyrus
MGP_PahariEiJ_G0028818	Sfpq	63	71.719	ENSPNYG00000007494	sfpq	62	72.851	Pundamilia_nyererei
MGP_PahariEiJ_G0028818	Sfpq	76	63.128	ENSPNAG00000002128	sfpq	73	72.973	Pygocentrus_nattereri
MGP_PahariEiJ_G0028818	Sfpq	100	96.710	ENSRNOG00000058461	Sfpq	100	96.710	Rattus_norvegicus
MGP_PahariEiJ_G0028818	Sfpq	99	72.246	ENSRBIG00000035286	SFPQ	100	99.430	Rhinopithecus_bieti
MGP_PahariEiJ_G0028818	Sfpq	68	100.000	ENSRROG00000040992	SFPQ	100	99.430	Rhinopithecus_roxellana
MGP_PahariEiJ_G0028818	Sfpq	50	99.430	ENSSBOG00000024972	-	100	99.430	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0028818	Sfpq	50	91.453	ENSSHAG00000012312	-	100	90.883	Sarcophilus_harrisii
MGP_PahariEiJ_G0028818	Sfpq	62	90.869	ENSSHAG00000016107	-	97	90.200	Sarcophilus_harrisii
MGP_PahariEiJ_G0028818	Sfpq	75	66.418	ENSSFOG00015009289	sfpq	79	77.778	Scleropages_formosus
MGP_PahariEiJ_G0028818	Sfpq	62	77.083	ENSSMAG00000018201	sfpq	65	74.771	Scophthalmus_maximus
MGP_PahariEiJ_G0028818	Sfpq	92	58.540	ENSSDUG00000008402	sfpq	65	78.291	Seriola_dumerili
MGP_PahariEiJ_G0028818	Sfpq	92	58.696	ENSSLDG00000018917	sfpq	65	78.291	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0028818	Sfpq	53	99.457	ENSSARG00000006409	SFPQ	100	99.457	Sorex_araneus
MGP_PahariEiJ_G0028818	Sfpq	85	94.472	ENSSSCG00000035690	SFPQ	96	89.926	Sus_scrofa
MGP_PahariEiJ_G0028818	Sfpq	62	94.896	ENSTGUG00000001722	SFPQ	100	94.896	Taeniopygia_guttata
MGP_PahariEiJ_G0028818	Sfpq	62	75.402	ENSTRUG00000003783	sfpq	62	76.092	Takifugu_rubripes
MGP_PahariEiJ_G0028818	Sfpq	63	76.484	ENSTNIG00000011331	sfpq	72	76.027	Tetraodon_nigroviridis
MGP_PahariEiJ_G0028818	Sfpq	69	87.009	ENSTBEG00000006238	SFPQ	79	75.644	Tupaia_belangeri
MGP_PahariEiJ_G0028818	Sfpq	85	90.452	ENSTTRG00000013930	SFPQ	85	91.457	Tursiops_truncatus
MGP_PahariEiJ_G0028818	Sfpq	50	98.374	ENSUAMG00000026758	SFPQ	100	98.039	Ursus_americanus
MGP_PahariEiJ_G0028818	Sfpq	50	96.581	ENSUMAG00000008056	-	100	96.581	Ursus_maritimus
MGP_PahariEiJ_G0028818	Sfpq	64	88.964	ENSVPAG00000006960	-	67	88.964	Vicugna_pacos
MGP_PahariEiJ_G0028818	Sfpq	50	88.319	ENSVVUG00000000874	-	100	88.319	Vulpes_vulpes
MGP_PahariEiJ_G0028818	Sfpq	65	79.957	ENSXETG00000009682	sfpq	100	84.830	Xenopus_tropicalis