EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0028969 (Gene tree)
Gene ID: 110322803
Gene Symbol: Srrm1
Alias: SRm160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 33735 bases
Position: chr6:86288250-86321984
Accession: 110322803
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0080238	PWI	PF01480.17	8.6e-31	1	1
MGP_PahariEiJ_P0080227	PWI	PF01480.17	1.1e-29	1	1
MGP_PahariEiJ_P0080230	PWI	PF01480.17	1.1e-29	1	1
MGP_PahariEiJ_P0080228	PWI	PF01480.17	1.1e-29	1	1
MGP_PahariEiJ_P0080229	PWI	PF01480.17	1.1e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0080234	-	506	-	-	- (aa)	-	-
MGP_PahariEiJ_T0080241	-	1072	-	-	- (aa)	-	-
MGP_PahariEiJ_T0080240	-	635	-	MGP_PahariEiJ_P0080240	140 (aa)	-	-
MGP_PahariEiJ_T0080232	-	4534	-	-	- (aa)	-	-
MGP_PahariEiJ_T0080233	-	373	-	-	- (aa)	-	-
MGP_PahariEiJ_T0080230	-	2910	-	MGP_PahariEiJ_P0080230	895 (aa)	-	-
MGP_PahariEiJ_T0080231	-	949	-	MGP_PahariEiJ_P0080231	316 (aa)	-	-
MGP_PahariEiJ_T0080236	-	796	-	MGP_PahariEiJ_P0080236	238 (aa)	-	-
MGP_PahariEiJ_T0080237	-	783	-	-	- (aa)	-	-
MGP_PahariEiJ_T0080227	-	3801	XM_021199588	MGP_PahariEiJ_P0080227	908 (aa)	XP_021055247	UPI000A30D2AC
MGP_PahariEiJ_T0080235	-	683	-	-	- (aa)	-	-
MGP_PahariEiJ_T0080229	-	3154	-	MGP_PahariEiJ_P0080229	922 (aa)	-	UPI000A30B7F2
MGP_PahariEiJ_T0080228	-	3744	XM_021199585	MGP_PahariEiJ_P0080228	917 (aa)	XP_021055244	UPI000A3078F9
MGP_PahariEiJ_T0080238	-	618	-	MGP_PahariEiJ_P0080238	198 (aa)	-	UPI000059E17C
MGP_PahariEiJ_T0080239	-	2841	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0028969's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0028969's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0028969	Srrm1	100	85.965	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
MGP_PahariEiJ_G0028969	Srrm1	100	85.965	ENSAMEG00000010075	SRRM1	59	97.571	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0028969	Srrm1	94	82.353	ENSACIG00000023398	-	79	81.675	Amphilophus_citrinellus
MGP_PahariEiJ_G0028969	Srrm1	100	76.419	ENSAPLG00000002066	SRRM1	59	66.162	Anas_platyrhynchos
MGP_PahariEiJ_G0028969	Srrm1	73	94.444	ENSACLG00000019786	-	77	82.723	Astatotilapia_calliptera
MGP_PahariEiJ_G0028969	Srrm1	96	84.211	ENSAMXG00000040320	-	73	94.872	Astyanax_mexicanus
MGP_PahariEiJ_G0028969	Srrm1	100	85.965	ENSBTAG00000013772	SRRM1	51	97.207	Bos_taurus
MGP_PahariEiJ_G0028969	Srrm1	100	85.965	ENSCAFG00020020948	SRRM1	99	96.030	Canis_lupus_dingo
MGP_PahariEiJ_G0028969	Srrm1	100	85.965	ENSCHIG00000014656	SRRM1	50	97.590	Capra_hircus
MGP_PahariEiJ_G0028969	Srrm1	100	85.965	ENSCCAG00000029474	SRRM1	96	96.755	Cebus_capucinus
MGP_PahariEiJ_G0028969	Srrm1	72	96.056	ENSCHOG00000000027	SRRM1	73	96.056	Choloepus_hoffmanni
MGP_PahariEiJ_G0028969	Srrm1	69	69.853	ENSCING00000022242	-	100	63.522	Ciona_intestinalis
MGP_PahariEiJ_G0028969	Srrm1	63	73.600	ENSCSAVG00000003919	-	99	59.113	Ciona_savignyi
MGP_PahariEiJ_G0028969	Srrm1	100	97.687	ENSCGRG00001014174	Srrm1	100	97.687	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0028969	Srrm1	99	97.705	ENSCGRG00000017603	Srrm1	100	97.705	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0028969	Srrm1	92	76.684	ENSCVAG00000000504	-	72	89.286	Cyprinodon_variegatus
MGP_PahariEiJ_G0028969	Srrm1	100	95.455	ENSDORG00000028601	-	100	95.455	Dipodomys_ordii
MGP_PahariEiJ_G0028969	Srrm1	55	78.899	ENSEBUG00000002653	-	81	73.554	Eptatretus_burgeri
MGP_PahariEiJ_G0028969	Srrm1	100	85.526	ENSEASG00005004270	SRRM1	56	96.861	Equus_asinus_asinus
MGP_PahariEiJ_G0028969	Srrm1	100	85.526	ENSECAG00000026981	SRRM1	56	96.861	Equus_caballus
MGP_PahariEiJ_G0028969	Srrm1	100	60.965	ENSEEUG00000013830	SRRM1	58	83.810	Erinaceus_europaeus
MGP_PahariEiJ_G0028969	Srrm1	100	85.965	ENSFCAG00000000678	-	59	97.571	Felis_catus
MGP_PahariEiJ_G0028969	Srrm1	100	92.857	ENSFCAG00000034671	-	85	86.235	Felis_catus
MGP_PahariEiJ_G0028969	Srrm1	97	78.378	ENSFALG00000000476	SRRM1	100	100.000	Ficedula_albicollis
MGP_PahariEiJ_G0028969	Srrm1	100	85.965	ENSFDAG00000009903	SRRM1	51	98.324	Fukomys_damarensis
MGP_PahariEiJ_G0028969	Srrm1	92	75.676	ENSFHEG00000007359	-	83	91.358	Fundulus_heteroclitus
MGP_PahariEiJ_G0028969	Srrm1	100	79.736	ENSGALG00000001283	SRRM1	99	100.000	Gallus_gallus
MGP_PahariEiJ_G0028969	Srrm1	92	77.720	ENSGAFG00000019431	-	98	63.158	Gambusia_affinis
MGP_PahariEiJ_G0028969	Srrm1	51	94.366	ENSHBUG00000020354	-	99	94.872	Haplochromis_burtoni
MGP_PahariEiJ_G0028969	Srrm1	51	81.944	ENSHGLG00100010430	-	99	78.750	Heterocephalus_glaber_male
MGP_PahariEiJ_G0028969	Srrm1	68	90.299	ENSHGLG00100017918	-	100	90.299	Heterocephalus_glaber_male
MGP_PahariEiJ_G0028969	Srrm1	56	87.179	ENSKMAG00000013810	-	97	83.696	Kryptolebias_marmoratus
MGP_PahariEiJ_G0028969	Srrm1	100	85.965	ENSMLEG00000038030	-	90	97.166	Mandrillus_leucophaeus
MGP_PahariEiJ_G0028969	Srrm1	73	94.444	ENSMZEG00005006344	-	77	82.723	Maylandia_zebra
MGP_PahariEiJ_G0028969	Srrm1	100	98.052	ENSMAUG00000015705	Srrm1	100	98.052	Mesocricetus_auratus
MGP_PahariEiJ_G0028969	Srrm1	91	82.514	ENSMMOG00000002390	-	77	94.872	Mola_mola
MGP_PahariEiJ_G0028969	Srrm1	92	73.196	ENSMALG00000010813	-	80	71.649	Monopterus_albus
MGP_PahariEiJ_G0028969	Srrm1	100	100.000	MGP_CAROLIEiJ_G0026636	Srrm1	100	100.000	Mus_caroli
MGP_PahariEiJ_G0028969	Srrm1	100	100.000	ENSMUSG00000028809	Srrm1	100	100.000	Mus_musculus
MGP_PahariEiJ_G0028969	Srrm1	100	100.000	MGP_SPRETEiJ_G0027616	Srrm1	100	100.000	Mus_spretus
MGP_PahariEiJ_G0028969	Srrm1	100	98.990	ENSMPUG00000015831	-	93	98.990	Mustela_putorius_furo
MGP_PahariEiJ_G0028969	Srrm1	100	96.858	ENSNGAG00000014562	Srrm1	100	96.858	Nannospalax_galili
MGP_PahariEiJ_G0028969	Srrm1	95	81.915	ENSNBRG00000010911	-	78	81.675	Neolamprologus_brichardi
MGP_PahariEiJ_G0028969	Srrm1	100	85.965	ENSNLEG00000008966	SRRM1	94	97.368	Nomascus_leucogenys
MGP_PahariEiJ_G0028969	Srrm1	53	86.601	ENSMEUG00000014704	SRRM1	52	86.601	Notamacropus_eugenii
MGP_PahariEiJ_G0028969	Srrm1	51	90.141	ENSODEG00000002361	-	100	89.744	Octodon_degus
MGP_PahariEiJ_G0028969	Srrm1	51	95.775	ENSODEG00000019473	-	100	96.154	Octodon_degus
MGP_PahariEiJ_G0028969	Srrm1	51	97.183	ENSODEG00000007221	-	92	97.183	Octodon_degus
MGP_PahariEiJ_G0028969	Srrm1	92	80.526	ENSORLG00000017510	-	80	80.729	Oryzias_latipes
MGP_PahariEiJ_G0028969	Srrm1	51	94.366	ENSORLG00020018419	-	99	94.872	Oryzias_latipes_hni
MGP_PahariEiJ_G0028969	Srrm1	95	96.357	ENSOARG00000006453	SRRM1	99	96.357	Ovis_aries
MGP_PahariEiJ_G0028969	Srrm1	100	85.965	ENSPPRG00000002509	SRRM1	59	97.571	Panthera_pardus
MGP_PahariEiJ_G0028969	Srrm1	88	82.286	ENSPTIG00000022093	-	85	80.769	Panthera_tigris_altaica
MGP_PahariEiJ_G0028969	Srrm1	90	78.652	ENSPMGG00000009036	-	73	92.308	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0028969	Srrm1	100	98.592	ENSPEMG00000006254	Srrm1	100	98.592	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0028969	Srrm1	51	94.366	ENSPMEG00000011776	-	99	94.872	Poecilia_mexicana
MGP_PahariEiJ_G0028969	Srrm1	51	94.366	ENSPMEG00000002615	-	99	94.872	Poecilia_mexicana
MGP_PahariEiJ_G0028969	Srrm1	52	96.450	ENSPCAG00000015138	SRRM1	52	96.450	Procavia_capensis
MGP_PahariEiJ_G0028969	Srrm1	100	85.526	ENSPVAG00000005836	SRRM1	59	97.166	Pteropus_vampyrus
MGP_PahariEiJ_G0028969	Srrm1	73	94.444	ENSPNYG00000005058	-	77	82.723	Pundamilia_nyererei
MGP_PahariEiJ_G0028969	Srrm1	59	84.337	ENSPNAG00000005888	-	75	93.590	Pygocentrus_nattereri
MGP_PahariEiJ_G0028969	Srrm1	100	99.119	ENSRNOG00000018194	Srrm1	100	99.119	Rattus_norvegicus
MGP_PahariEiJ_G0028969	Srrm1	100	69.266	ENSRROG00000041543	-	52	68.826	Rhinopithecus_roxellana
MGP_PahariEiJ_G0028969	Srrm1	91	96.098	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0028969	Srrm1	90	76.374	ENSSMAG00000009318	-	80	76.471	Scophthalmus_maximus
MGP_PahariEiJ_G0028969	Srrm1	58	65.854	ENSSLDG00000003901	-	63	69.106	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0028969	Srrm1	100	73.684	ENSSARG00000013718	SRRM1	60	90.523	Sorex_araneus
MGP_PahariEiJ_G0028969	Srrm1	96	85.520	ENSSSCG00000032947	SRRM1	53	97.207	Sus_scrofa
MGP_PahariEiJ_G0028969	Srrm1	100	79.736	ENSTGUG00000001135	SRRM1	55	91.903	Taeniopygia_guttata
MGP_PahariEiJ_G0028969	Srrm1	51	98.611	ENSTGUG00000016669	-	99	100.000	Taeniopygia_guttata
MGP_PahariEiJ_G0028969	Srrm1	59	89.024	ENSUAMG00000011740	-	87	100.000	Ursus_americanus