EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0028978 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 13853 bases
Position: chr6:86813178-86827030
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0080269	RRM_1	PF00076.22	6.3e-20	1	1
MGP_PahariEiJ_P0080270	RRM_1	PF00076.22	6.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0080272	-	686	-	-	- (aa)	-	-
MGP_PahariEiJ_T0080269	-	2103	-	MGP_PahariEiJ_P0080269	125 (aa)	-	-
MGP_PahariEiJ_T0080273	-	729	-	-	- (aa)	-	-
MGP_PahariEiJ_T0080270	-	3648	-	MGP_PahariEiJ_P0080270	125 (aa)	-	-
MGP_PahariEiJ_T0080271	-	2367	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0028978's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0028978's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0028978	-	67	33.721	MGP_PahariEiJ_G0029348	Sf3b6	66	33.721
MGP_PahariEiJ_G0028978	-	72	36.667	MGP_PahariEiJ_G0030981	Cirbp	73	37.975
MGP_PahariEiJ_G0028978	-	93	30.833	MGP_PahariEiJ_G0030987	Dazap1	70	31.452
MGP_PahariEiJ_G0028978	-	71	30.337	MGP_PahariEiJ_G0017224	Hnrnpd	76	30.337
MGP_PahariEiJ_G0028978	-	76	35.789	MGP_PahariEiJ_G0023654	-	55	35.789
MGP_PahariEiJ_G0028978	-	60	34.667	MGP_PahariEiJ_G0031463	Rbm3	79	33.803
MGP_PahariEiJ_G0028978	-	66	35.227	MGP_PahariEiJ_G0031641	Rbmx	85	35.227
MGP_PahariEiJ_G0028978	-	80	31.868	MGP_PahariEiJ_G0026409	Pabpc4l	52	30.337
MGP_PahariEiJ_G0028978	-	76	33.684	MGP_PahariEiJ_G0028765	Pabpc4	65	33.684

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0028978	-	85	100.000	ENSG00000188529	SRSF10	90	93.548	Homo_sapiens
MGP_PahariEiJ_G0028978	-	76	85.263	ENSANAG00000033569	-	84	93.878	Aotus_nancymaae
MGP_PahariEiJ_G0028978	-	85	99.057	ENSBTAG00000054307	-	52	99.057	Bos_taurus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSBTAG00000008072	SRSF10	58	100.000	Bos_taurus
MGP_PahariEiJ_G0028978	-	85	94.340	ENSCJAG00000010608	-	57	94.340	Callithrix_jacchus
MGP_PahariEiJ_G0028978	-	83	84.615	ENSCJAG00000002933	-	58	84.906	Callithrix_jacchus
MGP_PahariEiJ_G0028978	-	76	97.895	ENSCHIG00000000308	-	59	97.895	Capra_hircus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSTSYG00000009439	-	64	100.000	Carlito_syrichta
MGP_PahariEiJ_G0028978	-	67	100.000	ENSCAPG00000014746	SRSF10	52	100.000	Cavia_aperea
MGP_PahariEiJ_G0028978	-	85	100.000	ENSCPOG00000034102	SRSF10	58	100.000	Cavia_porcellus
MGP_PahariEiJ_G0028978	-	85	69.811	ENSCCAG00000024936	-	55	69.811	Cebus_capucinus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSCCAG00000022497	SRSF10	90	93.548	Cebus_capucinus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSCATG00000031598	SRSF10	64	100.000	Cercocebus_atys
MGP_PahariEiJ_G0028978	-	85	100.000	ENSCLAG00000015555	SRSF10	58	100.000	Chinchilla_lanigera
MGP_PahariEiJ_G0028978	-	85	100.000	ENSCHOG00000004836	-	73	100.000	Choloepus_hoffmanni
MGP_PahariEiJ_G0028978	-	85	99.057	ENSCHOG00000007773	-	65	99.057	Choloepus_hoffmanni
MGP_PahariEiJ_G0028978	-	68	100.000	ENSCANG00000042227	-	59	100.000	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSCANG00000037461	-	65	100.000	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSCANG00000037293	-	69	100.000	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSCGRG00001017946	Srsf10	58	100.000	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0028978	-	76	75.789	ENSDNOG00000048051	-	71	75.789	Dasypus_novemcinctus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSDORG00000024574	Srsf10	58	100.000	Dipodomys_ordii
MGP_PahariEiJ_G0028978	-	73	79.121	ENSELUG00000017108	SRSF10	60	79.121	Esox_lucius
MGP_PahariEiJ_G0028978	-	85	100.000	ENSFCAG00000045556	SRSF10	64	100.000	Felis_catus
MGP_PahariEiJ_G0028978	-	65	87.654	ENSFDAG00000005977	-	53	87.654	Fukomys_damarensis
MGP_PahariEiJ_G0028978	-	78	86.598	ENSGAFG00000014771	srsf10b	58	79.817	Gambusia_affinis
MGP_PahariEiJ_G0028978	-	81	83.168	ENSGGOG00000042323	-	66	84.000	Gorilla_gorilla
MGP_PahariEiJ_G0028978	-	85	100.000	ENSGGOG00000000392	SRSF10	90	93.548	Gorilla_gorilla
MGP_PahariEiJ_G0028978	-	85	100.000	ENSHGLG00000010879	-	58	100.000	Heterocephalus_glaber_female
MGP_PahariEiJ_G0028978	-	85	100.000	ENSSTOG00000000956	SRSF10	58	100.000	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSJJAG00000009074	Srsf10	58	100.000	Jaculus_jaculus
MGP_PahariEiJ_G0028978	-	85	98.113	ENSJJAG00000014552	-	58	98.113	Jaculus_jaculus
MGP_PahariEiJ_G0028978	-	72	87.778	ENSJJAG00000023686	-	60	87.778	Jaculus_jaculus
MGP_PahariEiJ_G0028978	-	85	89.623	ENSJJAG00000021270	-	50	89.623	Jaculus_jaculus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSMFAG00000046011	SRSF10	90	93.548	Macaca_fascicularis
MGP_PahariEiJ_G0028978	-	85	96.226	ENSMMUG00000038562	-	63	96.226	Macaca_mulatta
MGP_PahariEiJ_G0028978	-	85	100.000	ENSMNEG00000041500	SRSF10	64	100.000	Macaca_nemestrina
MGP_PahariEiJ_G0028978	-	85	100.000	ENSMLEG00000016013	SRSF10	64	100.000	Mandrillus_leucophaeus
MGP_PahariEiJ_G0028978	-	85	75.472	ENSMLEG00000033834	-	63	75.472	Mandrillus_leucophaeus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSMAUG00000019452	Srsf10	58	100.000	Mesocricetus_auratus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSMICG00000047638	SRSF10	90	93.548	Microcebus_murinus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSMICG00000017029	-	64	100.000	Microcebus_murinus
MGP_PahariEiJ_G0028978	-	85	97.196	ENSMODG00000013020	-	52	97.196	Monodelphis_domestica
MGP_PahariEiJ_G0028978	-	82	82.524	ENSMALG00000017201	srsf10b	55	82.524	Monopterus_albus
MGP_PahariEiJ_G0028978	-	85	100.000	MGP_CAROLIEiJ_G0026645	Srsf10	58	100.000	Mus_caroli
MGP_PahariEiJ_G0028978	-	85	100.000	ENSMUSG00000028676	Srsf10	58	100.000	Mus_musculus
MGP_PahariEiJ_G0028978	-	85	100.000	MGP_SPRETEiJ_G0027625	-	58	100.000	Mus_spretus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSNGAG00000000067	Srsf10	58	100.000	Nannospalax_galili
MGP_PahariEiJ_G0028978	-	85	100.000	ENSNLEG00000027520	SRSF10	64	100.000	Nomascus_leucogenys
MGP_PahariEiJ_G0028978	-	83	79.808	ENSODEG00000002658	-	52	80.189	Octodon_degus
MGP_PahariEiJ_G0028978	-	85	87.736	ENSODEG00000007110	-	50	87.736	Octodon_degus
MGP_PahariEiJ_G0028978	-	60	94.667	ENSOANG00000031194	-	51	94.667	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0028978	-	83	78.846	ENSOCUG00000028110	-	56	79.245	Oryctolagus_cuniculus
MGP_PahariEiJ_G0028978	-	85	98.113	ENSOCUG00000021782	-	64	98.113	Oryctolagus_cuniculus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSOCUG00000024013	-	64	100.000	Oryctolagus_cuniculus
MGP_PahariEiJ_G0028978	-	83	95.192	ENSOARG00000015607	-	57	95.283	Ovis_aries
MGP_PahariEiJ_G0028978	-	80	78.000	ENSPPAG00000007053	-	66	79.208	Pan_paniscus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSPPAG00000032557	SRSF10	90	93.548	Pan_paniscus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSPPRG00000005806	SRSF10	64	100.000	Panthera_pardus
MGP_PahariEiJ_G0028978	-	85	99.057	ENSPTIG00000014137	SRSF10	64	99.057	Panthera_tigris_altaica
MGP_PahariEiJ_G0028978	-	79	83.838	ENSPTRG00000051779	-	69	84.314	Pan_troglodytes
MGP_PahariEiJ_G0028978	-	85	100.000	ENSPTRG00000044753	SRSF10	64	100.000	Pan_troglodytes
MGP_PahariEiJ_G0028978	-	85	100.000	ENSPANG00000021680	SRSF10	64	100.000	Papio_anubis
MGP_PahariEiJ_G0028978	-	82	79.817	ENSPREG00000008383	srsf10b	58	79.817	Poecilia_reticulata
MGP_PahariEiJ_G0028978	-	85	100.000	ENSPCOG00000022379	SRSF10	64	100.000	Propithecus_coquereli
MGP_PahariEiJ_G0028978	-	85	100.000	ENSRNOG00000007992	Srsf10	65	100.000	Rattus_norvegicus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSRBIG00000028456	SRSF10	64	100.000	Rhinopithecus_bieti
MGP_PahariEiJ_G0028978	-	85	87.736	ENSRBIG00000044085	-	65	87.736	Rhinopithecus_bieti
MGP_PahariEiJ_G0028978	-	85	100.000	ENSRROG00000043248	SRSF10	64	100.000	Rhinopithecus_roxellana
MGP_PahariEiJ_G0028978	-	85	87.736	ENSRROG00000036002	-	65	87.736	Rhinopithecus_roxellana
MGP_PahariEiJ_G0028978	-	85	100.000	ENSSBOG00000019550	SRSF10	64	100.000	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0028978	-	86	81.818	ENSSPAG00000020494	SRSF10	73	81.818	Stegastes_partitus
MGP_PahariEiJ_G0028978	-	85	100.000	ENSSSCG00000036293	SRSF10	90	93.548	Sus_scrofa
MGP_PahariEiJ_G0028978	-	83	91.429	ENSTGUG00000001178	-	65	91.589	Taeniopygia_guttata
MGP_PahariEiJ_G0028978	-	85	93.458	ENSUAMG00000026596	-	58	93.458	Ursus_americanus