EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0029205 (Gene tree)
Gene ID: 110322995
Gene Symbol: Chd5
Alias: 4930532L22Rik|B230399N07Rik
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 51333 bases
Position: chr6:103262304-103313636
Accession: 110322995
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0081196	ResIII	PF04851.15	2e-07	1	1
MGP_PahariEiJ_P0081198	ResIII	PF04851.15	2.4e-07	1	1
MGP_PahariEiJ_P0081197	ResIII	PF04851.15	2.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0081200	-	6220	-	-	- (aa)	-	-
MGP_PahariEiJ_T0081196	-	9339	XM_021200002	MGP_PahariEiJ_P0081196	1912 (aa)	XP_021055661	UPI000A30E151
MGP_PahariEiJ_T0081197	-	9450	XM_021200001	MGP_PahariEiJ_P0081197	1949 (aa)	XP_021055660	UPI000A3091EC
MGP_PahariEiJ_T0081198	-	9087	-	MGP_PahariEiJ_P0081198	1943 (aa)	-	-
MGP_PahariEiJ_T0081199	-	280	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0029205's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0029205's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0029205	Chd5	97	70.349	MGP_PahariEiJ_G0017695	Chd3	98	70.178
MGP_PahariEiJ_G0029205	Chd5	51	34.359	MGP_PahariEiJ_G0026048	Chd6	66	36.621

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0029205	Chd5	100	94.371	ENSG00000116254	CHD5	100	94.371	Homo_sapiens
MGP_PahariEiJ_G0029205	Chd5	99	93.721	ENSAMEG00000009880	CHD5	99	93.711	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0029205	Chd5	94	78.661	ENSACIG00000012582	chd5	98	78.901	Amphilophus_citrinellus
MGP_PahariEiJ_G0029205	Chd5	95	79.861	ENSAOCG00000020356	chd5	93	79.118	Amphiprion_ocellaris
MGP_PahariEiJ_G0029205	Chd5	94	81.378	ENSAPLG00000015475	CHD5	98	81.466	Anas_platyrhynchos
MGP_PahariEiJ_G0029205	Chd5	99	82.769	ENSACAG00000002441	CHD5	96	83.642	Anolis_carolinensis
MGP_PahariEiJ_G0029205	Chd5	87	94.914	ENSANAG00000001078	CHD5	91	94.914	Aotus_nancymaae
MGP_PahariEiJ_G0029205	Chd5	95	75.649	ENSACLG00000003012	chd5	96	75.719	Astatotilapia_calliptera
MGP_PahariEiJ_G0029205	Chd5	84	85.714	ENSAMXG00000008921	chd5	94	85.200	Astyanax_mexicanus
MGP_PahariEiJ_G0029205	Chd5	93	95.710	ENSBTAG00000040477	CHD5	100	95.710	Bos_taurus
MGP_PahariEiJ_G0029205	Chd5	100	94.217	ENSCJAG00000000101	CHD5	100	94.217	Callithrix_jacchus
MGP_PahariEiJ_G0029205	Chd5	93	95.542	ENSCAFG00000019545	CHD5	100	95.542	Canis_familiaris
MGP_PahariEiJ_G0029205	Chd5	99	94.726	ENSCAFG00020008689	CHD5	97	94.726	Canis_lupus_dingo
MGP_PahariEiJ_G0029205	Chd5	99	93.852	ENSCHIG00000015027	CHD5	99	92.153	Capra_hircus
MGP_PahariEiJ_G0029205	Chd5	98	89.737	ENSTSYG00000033991	CHD5	99	90.253	Carlito_syrichta
MGP_PahariEiJ_G0029205	Chd5	99	94.656	ENSCAPG00000009294	CHD5	99	94.650	Cavia_aperea
MGP_PahariEiJ_G0029205	Chd5	99	94.656	ENSCPOG00000025080	CHD5	99	94.650	Cavia_porcellus
MGP_PahariEiJ_G0029205	Chd5	100	94.371	ENSCCAG00000024756	CHD5	100	94.371	Cebus_capucinus
MGP_PahariEiJ_G0029205	Chd5	100	93.808	ENSCATG00000043011	CHD5	100	93.808	Cercocebus_atys
MGP_PahariEiJ_G0029205	Chd5	99	95.079	ENSCLAG00000010589	CHD5	99	95.074	Chinchilla_lanigera
MGP_PahariEiJ_G0029205	Chd5	100	94.626	ENSCSAG00000000733	CHD5	100	94.626	Chlorocebus_sabaeus
MGP_PahariEiJ_G0029205	Chd5	93	89.194	ENSCPBG00000019363	CHD5	100	89.084	Chrysemys_picta_bellii
MGP_PahariEiJ_G0029205	Chd5	99	94.712	ENSCANG00000032302	CHD5	99	94.701	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0029205	Chd5	55	98.208	ENSCGRG00001011042	Chd5	100	98.208	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0029205	Chd5	99	97.614	ENSCGRG00000011341	Chd5	100	97.614	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0029205	Chd5	94	67.863	ENSDARG00000025789	chd4b	96	68.354	Danio_rerio
MGP_PahariEiJ_G0029205	Chd5	96	78.496	ENSDARG00000105083	chd5	97	79.974	Danio_rerio
MGP_PahariEiJ_G0029205	Chd5	100	90.332	ENSDNOG00000046342	CHD5	100	90.020	Dasypus_novemcinctus
MGP_PahariEiJ_G0029205	Chd5	99	94.767	ENSDORG00000005923	Chd5	99	94.762	Dipodomys_ordii
MGP_PahariEiJ_G0029205	Chd5	99	93.234	ENSEASG00005021464	CHD5	98	93.410	Equus_asinus_asinus
MGP_PahariEiJ_G0029205	Chd5	99	92.705	ENSECAG00000025043	CHD5	98	97.984	Equus_caballus
MGP_PahariEiJ_G0029205	Chd5	77	99.070	ENSEEUG00000002772	CHD5	77	99.070	Erinaceus_europaeus
MGP_PahariEiJ_G0029205	Chd5	93	77.094	ENSELUG00000010742	chd5	90	90.783	Esox_lucius
MGP_PahariEiJ_G0029205	Chd5	100	94.268	ENSFCAG00000006319	CHD5	100	94.268	Felis_catus
MGP_PahariEiJ_G0029205	Chd5	99	87.558	ENSFALG00000009740	CHD5	99	86.970	Ficedula_albicollis
MGP_PahariEiJ_G0029205	Chd5	99	94.361	ENSFDAG00000012881	CHD5	96	94.507	Fukomys_damarensis
MGP_PahariEiJ_G0029205	Chd5	100	86.786	ENSGALG00000000747	CHD5	100	86.224	Gallus_gallus
MGP_PahariEiJ_G0029205	Chd5	57	82.705	ENSGACG00000004389	chd5	93	82.889	Gasterosteus_aculeatus
MGP_PahariEiJ_G0029205	Chd5	96	87.179	ENSGAGG00000001590	CHD5	99	95.122	Gopherus_agassizii
MGP_PahariEiJ_G0029205	Chd5	99	94.395	ENSGGOG00000000708	CHD5	99	94.390	Gorilla_gorilla
MGP_PahariEiJ_G0029205	Chd5	96	75.921	ENSHBUG00000013453	chd5	96	76.529	Haplochromis_burtoni
MGP_PahariEiJ_G0029205	Chd5	100	94.679	ENSHGLG00000018184	CHD5	100	94.679	Heterocephalus_glaber_female
MGP_PahariEiJ_G0029205	Chd5	99	88.336	ENSHGLG00100013261	CHD5	98	87.396	Heterocephalus_glaber_male
MGP_PahariEiJ_G0029205	Chd5	94	79.337	ENSIPUG00000005446	chd5	98	79.867	Ictalurus_punctatus
MGP_PahariEiJ_G0029205	Chd5	99	94.868	ENSSTOG00000002778	CHD5	99	95.445	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0029205	Chd5	100	95.720	ENSJJAG00000019072	Chd5	100	95.668	Jaculus_jaculus
MGP_PahariEiJ_G0029205	Chd5	96	82.277	ENSLOCG00000004944	chd5	95	81.330	Lepisosteus_oculatus
MGP_PahariEiJ_G0029205	Chd5	99	94.860	ENSLAFG00000006348	CHD5	99	94.852	Loxodonta_africana
MGP_PahariEiJ_G0029205	Chd5	99	94.508	ENSMFAG00000033993	CHD5	100	95.322	Macaca_fascicularis
MGP_PahariEiJ_G0029205	Chd5	99	94.606	ENSMMUG00000016838	CHD5	99	94.597	Macaca_mulatta
MGP_PahariEiJ_G0029205	Chd5	100	94.678	ENSMNEG00000040044	CHD5	100	94.678	Macaca_nemestrina
MGP_PahariEiJ_G0029205	Chd5	99	91.295	ENSMLEG00000039166	CHD5	99	91.287	Mandrillus_leucophaeus
MGP_PahariEiJ_G0029205	Chd5	95	75.916	ENSMZEG00005000841	chd5	92	81.224	Maylandia_zebra
MGP_PahariEiJ_G0029205	Chd5	99	87.046	ENSMGAG00000001055	CHD5	99	86.790	Meleagris_gallopavo
MGP_PahariEiJ_G0029205	Chd5	100	91.193	ENSMICG00000017862	CHD5	100	91.807	Microcebus_murinus
MGP_PahariEiJ_G0029205	Chd5	100	97.646	ENSMOCG00000011049	Chd5	100	97.646	Microtus_ochrogaster
MGP_PahariEiJ_G0029205	Chd5	91	79.799	ENSMODG00000006294	CHD5	87	79.598	Monodelphis_domestica
MGP_PahariEiJ_G0029205	Chd5	95	78.590	ENSMALG00000002831	chd5	99	77.147	Monopterus_albus
MGP_PahariEiJ_G0029205	Chd5	100	99.436	MGP_CAROLIEiJ_G0026857	Chd5	100	99.436	Mus_caroli
MGP_PahariEiJ_G0029205	Chd5	100	99.008	ENSMUSG00000005045	Chd5	100	99.008	Mus_musculus
MGP_PahariEiJ_G0029205	Chd5	100	99.268	MGP_SPRETEiJ_G0027850	Chd5	100	99.268	Mus_spretus
MGP_PahariEiJ_G0029205	Chd5	99	90.246	ENSMPUG00000007122	CHD5	99	90.579	Mustela_putorius_furo
MGP_PahariEiJ_G0029205	Chd5	99	95.218	ENSNGAG00000019812	Chd5	96	95.258	Nannospalax_galili
MGP_PahariEiJ_G0029205	Chd5	99	92.073	ENSNLEG00000010320	CHD5	99	91.896	Nomascus_leucogenys
MGP_PahariEiJ_G0029205	Chd5	86	87.088	ENSOPRG00000004304	CHD5	87	87.088	Ochotona_princeps
MGP_PahariEiJ_G0029205	Chd5	99	94.494	ENSODEG00000010262	CHD5	99	94.489	Octodon_degus
MGP_PahariEiJ_G0029205	Chd5	93	78.318	ENSONIG00000000619	chd5	93	78.330	Oreochromis_niloticus
MGP_PahariEiJ_G0029205	Chd5	96	72.545	ENSOANG00000001819	CHD5	98	72.593	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0029205	Chd5	99	92.268	ENSOGAG00000005703	CHD5	99	92.883	Otolemur_garnettii
MGP_PahariEiJ_G0029205	Chd5	99	93.157	ENSOARG00000013425	CHD5	99	93.191	Ovis_aries
MGP_PahariEiJ_G0029205	Chd5	99	94.346	ENSPPAG00000034048	CHD5	99	94.341	Pan_paniscus
MGP_PahariEiJ_G0029205	Chd5	100	93.705	ENSPPRG00000009453	CHD5	100	93.705	Panthera_pardus
MGP_PahariEiJ_G0029205	Chd5	99	86.595	ENSPTIG00000013926	CHD5	99	86.759	Panthera_tigris_altaica
MGP_PahariEiJ_G0029205	Chd5	100	94.322	ENSPTRG00000000075	CHD5	100	94.322	Pan_troglodytes
MGP_PahariEiJ_G0029205	Chd5	100	94.729	ENSPANG00000006765	CHD5	100	94.729	Papio_anubis
MGP_PahariEiJ_G0029205	Chd5	94	78.723	ENSPKIG00000004282	chd5	98	78.166	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0029205	Chd5	93	82.302	ENSPSIG00000006414	CHD5	99	82.238	Pelodiscus_sinensis
MGP_PahariEiJ_G0029205	Chd5	69	97.671	ENSPEMG00000014799	Chd5	100	97.913	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0029205	Chd5	99	91.058	ENSPCIG00000028310	CHD5	100	89.163	Phascolarctos_cinereus
MGP_PahariEiJ_G0029205	Chd5	95	76.964	ENSPLAG00000005343	chd5	99	76.552	Poecilia_latipinna
MGP_PahariEiJ_G0029205	Chd5	99	90.800	ENSPPYG00000001952	CHD5	99	91.411	Pongo_abelii
MGP_PahariEiJ_G0029205	Chd5	100	94.217	ENSPCOG00000022930	CHD5	100	94.831	Propithecus_coquereli
MGP_PahariEiJ_G0029205	Chd5	94	77.226	ENSPNYG00000003183	chd5	99	76.919	Pundamilia_nyererei
MGP_PahariEiJ_G0029205	Chd5	100	98.512	ENSRNOG00000011268	Chd5	100	98.512	Rattus_norvegicus
MGP_PahariEiJ_G0029205	Chd5	94	96.395	ENSRBIG00000032140	CHD5	95	96.395	Rhinopithecus_bieti
MGP_PahariEiJ_G0029205	Chd5	99	94.707	ENSRROG00000041146	CHD5	99	94.701	Rhinopithecus_roxellana
MGP_PahariEiJ_G0029205	Chd5	100	88.253	ENSSBOG00000001955	CHD5	100	95.074	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0029205	Chd5	96	85.164	ENSSHAG00000018641	CHD5	99	85.140	Sarcophilus_harrisii
MGP_PahariEiJ_G0029205	Chd5	88	88.412	ENSSFOG00015006296	chd5	90	92.093	Scleropages_formosus
MGP_PahariEiJ_G0029205	Chd5	94	78.328	ENSSDUG00000017526	chd5	92	90.367	Seriola_dumerili
MGP_PahariEiJ_G0029205	Chd5	97	81.029	ENSSPUG00000010622	CHD5	97	81.504	Sphenodon_punctatus
MGP_PahariEiJ_G0029205	Chd5	100	94.464	ENSSSCG00000003366	CHD5	100	95.542	Sus_scrofa
MGP_PahariEiJ_G0029205	Chd5	91	84.338	ENSTGUG00000002634	-	100	84.142	Taeniopygia_guttata
MGP_PahariEiJ_G0029205	Chd5	53	80.509	ENSTNIG00000004346	chd5	99	80.709	Tetraodon_nigroviridis
MGP_PahariEiJ_G0029205	Chd5	100	93.250	ENSTTRG00000010468	CHD5	100	93.510	Tursiops_truncatus
MGP_PahariEiJ_G0029205	Chd5	98	94.759	ENSUAMG00000024509	CHD5	98	94.237	Ursus_americanus
MGP_PahariEiJ_G0029205	Chd5	98	89.781	ENSUMAG00000024173	CHD5	98	90.114	Ursus_maritimus
MGP_PahariEiJ_G0029205	Chd5	99	92.762	ENSVVUG00000026480	CHD5	99	92.738	Vulpes_vulpes
MGP_PahariEiJ_G0029205	Chd5	96	80.332	ENSXETG00000002904	chd5	99	79.533	Xenopus_tropicalis
MGP_PahariEiJ_G0029205	Chd5	59	83.871	ENSXCOG00000014202	chd5	99	83.871	Xiphophorus_couchianus