EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0029212 (Gene tree)
Gene ID: 110323286
Gene Symbol: Lrrc47
Alias: 2900010D03Rik
Full Name: leucine rich repeat containing 47
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 9236 bases
Position: chr6:104918835-104928070
Accession: 110323286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0081240	B3_4	PF03483.17	2.6e-09	1	1
MGP_PahariEiJ_P0081239	B3_4	PF03483.17	2.8e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0081240	-	2972	-	MGP_PahariEiJ_P0081240	581 (aa)	XP_021056093	UPI000A3056E5
MGP_PahariEiJ_T0081239	-	3045	-	MGP_PahariEiJ_P0081239	603 (aa)	-	-
MGP_PahariEiJ_T0081241	-	378	-	-	- (aa)	-	-
MGP_PahariEiJ_T0081242	-	843	-	MGP_PahariEiJ_P0081242	122 (aa)	-	-
MGP_PahariEiJ_T0081243	-	481	-	MGP_PahariEiJ_P0081243	78 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0029212's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0029212's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0029212	Lrrc47	99	86.082	ENSG00000130764	LRRC47	99	84.055	Homo_sapiens
MGP_PahariEiJ_G0029212	Lrrc47	97	54.049	ENSAPOG00000019553	lrrc47	97	54.255	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0029212	Lrrc47	79	76.087	ENSAMEG00000009152	LRRC47	100	76.087	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0029212	Lrrc47	66	67.098	ENSAPLG00000003167	LRRC47	100	65.195	Anas_platyrhynchos
MGP_PahariEiJ_G0029212	Lrrc47	65	65.263	ENSACAG00000008267	LRRC47	99	65.608	Anolis_carolinensis
MGP_PahariEiJ_G0029212	Lrrc47	99	84.708	ENSANAG00000025576	LRRC47	99	82.669	Aotus_nancymaae
MGP_PahariEiJ_G0029212	Lrrc47	99	81.771	ENSBTAG00000004738	LRRC47	99	81.533	Bos_taurus
MGP_PahariEiJ_G0029212	Lrrc47	98	80.696	ENSCAFG00000019492	LRRC47	94	79.856	Canis_familiaris
MGP_PahariEiJ_G0029212	Lrrc47	99	80.763	ENSCAFG00020009667	LRRC47	99	80.488	Canis_lupus_dingo
MGP_PahariEiJ_G0029212	Lrrc47	99	82.465	ENSCHIG00000022607	LRRC47	98	82.168	Capra_hircus
MGP_PahariEiJ_G0029212	Lrrc47	95	84.919	ENSTSYG00000009326	LRRC47	96	83.303	Carlito_syrichta
MGP_PahariEiJ_G0029212	Lrrc47	64	82.181	ENSCAPG00000016517	LRRC47	100	81.117	Cavia_aperea
MGP_PahariEiJ_G0029212	Lrrc47	99	86.207	ENSCPOG00000014931	LRRC47	100	83.802	Cavia_porcellus
MGP_PahariEiJ_G0029212	Lrrc47	99	84.364	ENSCCAG00000024895	LRRC47	99	82.842	Cebus_capucinus
MGP_PahariEiJ_G0029212	Lrrc47	99	87.285	ENSCATG00000029337	LRRC47	99	84.229	Cercocebus_atys
MGP_PahariEiJ_G0029212	Lrrc47	99	87.241	ENSCLAG00000006093	LRRC47	99	85.739	Chinchilla_lanigera
MGP_PahariEiJ_G0029212	Lrrc47	99	87.285	ENSCSAG00000000727	LRRC47	99	84.229	Chlorocebus_sabaeus
MGP_PahariEiJ_G0029212	Lrrc47	99	60.500	ENSCPBG00000019404	LRRC47	98	60.237	Chrysemys_picta_bellii
MGP_PahariEiJ_G0029212	Lrrc47	78	82.863	ENSCANG00000030701	LRRC47	96	82.213	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0029212	Lrrc47	98	93.706	ENSCGRG00001015159	Lrrc47	93	92.256	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0029212	Lrrc47	65	91.512	ENSCGRG00000017336	Lrrc47	100	91.711	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0029212	Lrrc47	99	52.668	ENSCSEG00000006217	lrrc47	95	52.972	Cynoglossus_semilaevis
MGP_PahariEiJ_G0029212	Lrrc47	64	77.394	ENSDORG00000016594	Lrrc47	99	80.053	Dipodomys_ordii
MGP_PahariEiJ_G0029212	Lrrc47	99	82.818	ENSEASG00005021788	LRRC47	99	83.016	Equus_asinus_asinus
MGP_PahariEiJ_G0029212	Lrrc47	99	82.669	ENSECAG00000022472	LRRC47	90	82.669	Equus_caballus
MGP_PahariEiJ_G0029212	Lrrc47	99	51.607	ENSELUG00000017544	lrrc47	97	52.144	Esox_lucius
MGP_PahariEiJ_G0029212	Lrrc47	93	82.385	ENSFCAG00000011632	LRRC47	96	82.385	Felis_catus
MGP_PahariEiJ_G0029212	Lrrc47	73	64.965	ENSFALG00000009631	LRRC47	99	63.448	Ficedula_albicollis
MGP_PahariEiJ_G0029212	Lrrc47	97	51.489	ENSGMOG00000015674	lrrc47	97	52.120	Gadus_morhua
MGP_PahariEiJ_G0029212	Lrrc47	99	61.684	ENSGALG00000050995	LRRC47	99	62.261	Gallus_gallus
MGP_PahariEiJ_G0029212	Lrrc47	99	53.368	ENSGACG00000005550	lrrc47	99	53.752	Gasterosteus_aculeatus
MGP_PahariEiJ_G0029212	Lrrc47	99	63.105	ENSGAGG00000022584	LRRC47	98	62.437	Gopherus_agassizii
MGP_PahariEiJ_G0029212	Lrrc47	99	86.082	ENSGGOG00000015571	LRRC47	99	84.055	Gorilla_gorilla
MGP_PahariEiJ_G0029212	Lrrc47	99	85.172	ENSHGLG00000018278	LRRC47	100	82.810	Heterocephalus_glaber_female
MGP_PahariEiJ_G0029212	Lrrc47	69	81.638	ENSHGLG00100008507	LRRC47	100	80.645	Heterocephalus_glaber_male
MGP_PahariEiJ_G0029212	Lrrc47	99	54.593	ENSHCOG00000006348	lrrc47	97	54.720	Hippocampus_comes
MGP_PahariEiJ_G0029212	Lrrc47	99	85.172	ENSSTOG00000027559	LRRC47	99	86.237	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0029212	Lrrc47	99	88.174	ENSJJAG00000017474	Lrrc47	99	86.802	Jaculus_jaculus
MGP_PahariEiJ_G0029212	Lrrc47	99	53.873	ENSKMAG00000003414	lrrc47	99	54.007	Kryptolebias_marmoratus
MGP_PahariEiJ_G0029212	Lrrc47	99	80.993	ENSLAFG00000011657	LRRC47	99	80.488	Loxodonta_africana
MGP_PahariEiJ_G0029212	Lrrc47	74	95.122	ENSMFAG00000045730	LRRC47	89	95.122	Macaca_fascicularis
MGP_PahariEiJ_G0029212	Lrrc47	99	87.716	ENSMNEG00000042488	LRRC47	99	84.402	Macaca_nemestrina
MGP_PahariEiJ_G0029212	Lrrc47	76	81.375	ENSMLEG00000043735	LRRC47	91	78.936	Mandrillus_leucophaeus
MGP_PahariEiJ_G0029212	Lrrc47	99	94.271	ENSMAUG00000021337	Lrrc47	99	92.953	Mesocricetus_auratus
MGP_PahariEiJ_G0029212	Lrrc47	99	85.198	ENSMICG00000026816	LRRC47	99	83.681	Microcebus_murinus
MGP_PahariEiJ_G0029212	Lrrc47	99	93.945	ENSMOCG00000021279	Lrrc47	99	94.241	Microtus_ochrogaster
MGP_PahariEiJ_G0029212	Lrrc47	99	52.595	ENSMMOG00000017007	lrrc47	99	52.174	Mola_mola
MGP_PahariEiJ_G0029212	Lrrc47	100	98.451	MGP_CAROLIEiJ_G0026864	Lrrc47	100	98.451	Mus_caroli
MGP_PahariEiJ_G0029212	Lrrc47	100	98.107	ENSMUSG00000029028	Lrrc47	100	98.107	Mus_musculus
MGP_PahariEiJ_G0029212	Lrrc47	100	97.848	MGP_SPRETEiJ_G0027857	Lrrc47	100	97.848	Mus_spretus
MGP_PahariEiJ_G0029212	Lrrc47	65	74.339	ENSMPUG00000007321	LRRC47	75	72.487	Mustela_putorius_furo
MGP_PahariEiJ_G0029212	Lrrc47	98	91.228	ENSNGAG00000022153	Lrrc47	99	91.972	Nannospalax_galili
MGP_PahariEiJ_G0029212	Lrrc47	99	82.302	ENSNLEG00000008131	LRRC47	99	80.243	Nomascus_leucogenys
MGP_PahariEiJ_G0029212	Lrrc47	84	84.254	ENSODEG00000010882	LRRC47	93	81.595	Octodon_degus
MGP_PahariEiJ_G0029212	Lrrc47	96	56.661	ENSORLG00000002532	lrrc47	99	56.553	Oryzias_latipes
MGP_PahariEiJ_G0029212	Lrrc47	97	57.268	ENSORLG00020019601	lrrc47	97	57.168	Oryzias_latipes_hni
MGP_PahariEiJ_G0029212	Lrrc47	97	56.743	ENSORLG00015014040	lrrc47	97	56.637	Oryzias_latipes_hsok
MGP_PahariEiJ_G0029212	Lrrc47	97	55.810	ENSOMEG00000008989	lrrc47	97	55.752	Oryzias_melastigma
MGP_PahariEiJ_G0029212	Lrrc47	99	84.536	ENSOGAG00000001553	LRRC47	99	82.118	Otolemur_garnettii
MGP_PahariEiJ_G0029212	Lrrc47	99	78.646	ENSOARG00000015290	LRRC47	99	78.397	Ovis_aries
MGP_PahariEiJ_G0029212	Lrrc47	97	82.436	ENSPPAG00000036370	-	99	80.562	Pan_paniscus
MGP_PahariEiJ_G0029212	Lrrc47	98	81.217	ENSPPRG00000005261	LRRC47	98	81.391	Panthera_pardus
MGP_PahariEiJ_G0029212	Lrrc47	99	86.082	ENSPTRG00000000068	LRRC47	99	84.055	Pan_troglodytes
MGP_PahariEiJ_G0029212	Lrrc47	99	87.285	ENSPANG00000012437	LRRC47	99	84.229	Papio_anubis
MGP_PahariEiJ_G0029212	Lrrc47	65	65.172	ENSPSIG00000004196	LRRC47	100	62.533	Pelodiscus_sinensis
MGP_PahariEiJ_G0029212	Lrrc47	64	95.187	ENSPEMG00000021068	Lrrc47	100	95.187	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0029212	Lrrc47	98	71.979	ENSPCIG00000003638	LRRC47	98	73.473	Phascolarctos_cinereus
MGP_PahariEiJ_G0029212	Lrrc47	90	56.897	ENSPFOG00000000992	lrrc47	90	56.589	Poecilia_formosa
MGP_PahariEiJ_G0029212	Lrrc47	99	55.113	ENSPLAG00000008077	lrrc47	99	54.991	Poecilia_latipinna
MGP_PahariEiJ_G0029212	Lrrc47	99	54.783	ENSPMEG00000007367	lrrc47	99	55.166	Poecilia_mexicana
MGP_PahariEiJ_G0029212	Lrrc47	99	85.911	ENSPPYG00000001960	LRRC47	99	83.882	Pongo_abelii
MGP_PahariEiJ_G0029212	Lrrc47	99	85.615	ENSPCOG00000019161	LRRC47	99	84.028	Propithecus_coquereli
MGP_PahariEiJ_G0029212	Lrrc47	99	80.584	ENSPVAG00000009839	LRRC47	99	80.416	Pteropus_vampyrus
MGP_PahariEiJ_G0029212	Lrrc47	99	54.031	ENSPNAG00000017982	lrrc47	98	53.565	Pygocentrus_nattereri
MGP_PahariEiJ_G0029212	Lrrc47	99	95.509	ENSRNOG00000024796	Lrrc47	99	95.637	Rattus_norvegicus
MGP_PahariEiJ_G0029212	Lrrc47	99	87.285	ENSRBIG00000019437	LRRC47	99	84.229	Rhinopithecus_bieti
MGP_PahariEiJ_G0029212	Lrrc47	99	87.285	ENSRROG00000043182	LRRC47	99	84.229	Rhinopithecus_roxellana
MGP_PahariEiJ_G0029212	Lrrc47	91	80.000	ENSSBOG00000026334	LRRC47	97	78.316	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0029212	Lrrc47	98	59.760	ENSSHAG00000007360	LRRC47	98	59.556	Sarcophilus_harrisii
MGP_PahariEiJ_G0029212	Lrrc47	97	54.450	ENSSMAG00000009344	lrrc47	97	55.142	Scophthalmus_maximus
MGP_PahariEiJ_G0029212	Lrrc47	97	54.225	ENSSDUG00000014618	lrrc47	97	54.787	Seriola_dumerili
MGP_PahariEiJ_G0029212	Lrrc47	97	54.401	ENSSLDG00000018908	lrrc47	97	54.610	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0029212	Lrrc47	100	60.963	ENSSPUG00000010277	LRRC47	96	60.601	Sphenodon_punctatus
MGP_PahariEiJ_G0029212	Lrrc47	97	55.810	ENSSPAG00000005188	lrrc47	99	55.401	Stegastes_partitus
MGP_PahariEiJ_G0029212	Lrrc47	99	80.756	ENSSSCG00000039516	LRRC47	99	80.556	Sus_scrofa
MGP_PahariEiJ_G0029212	Lrrc47	70	65.517	ENSTGUG00000002737	LRRC47	99	63.951	Taeniopygia_guttata
MGP_PahariEiJ_G0029212	Lrrc47	97	53.097	ENSTRUG00000017696	lrrc47	97	52.491	Takifugu_rubripes
MGP_PahariEiJ_G0029212	Lrrc47	99	52.083	ENSTNIG00000010923	lrrc47	99	52.273	Tetraodon_nigroviridis
MGP_PahariEiJ_G0029212	Lrrc47	99	80.928	ENSTTRG00000011751	LRRC47	99	80.936	Tursiops_truncatus
MGP_PahariEiJ_G0029212	Lrrc47	88	78.752	ENSUAMG00000012080	LRRC47	97	78.947	Ursus_americanus
MGP_PahariEiJ_G0029212	Lrrc47	65	72.441	ENSUMAG00000010781	LRRC47	81	74.016	Ursus_maritimus
MGP_PahariEiJ_G0029212	Lrrc47	99	72.619	ENSVVUG00000027118	LRRC47	98	70.588	Vulpes_vulpes
MGP_PahariEiJ_G0029212	Lrrc47	100	59.316	ENSXETG00000006029	lrrc47	98	58.957	Xenopus_tropicalis
MGP_PahariEiJ_G0029212	Lrrc47	96	55.893	ENSXCOG00000002813	lrrc47	96	56.071	Xiphophorus_couchianus
MGP_PahariEiJ_G0029212	Lrrc47	97	55.595	ENSXMAG00000019386	lrrc47	98	55.615	Xiphophorus_maculatus