EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0029754 (Gene tree)
Gene ID: 110324540
Gene Symbol: -
Alias: -
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 6656 bases
Position: chr7:82612598-82619253
Accession: 110324540
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0083116	RRM_1	PF00076.22	5.5e-14	1	1
MGP_PahariEiJ_P0083115	RRM_1	PF00076.22	6.7e-14	1	1
MGP_PahariEiJ_P0083117	RRM_1	PF00076.22	1.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0083116	-	387	XM_021202188	MGP_PahariEiJ_P0083116	111 (aa)	XP_021057847	UPI000A305A02
MGP_PahariEiJ_T0083117	-	337	-	MGP_PahariEiJ_P0083117	103 (aa)	-	-
MGP_PahariEiJ_T0083115	-	1024	-	MGP_PahariEiJ_P0083115	93 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0029754's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0029754's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0029754	-	78	30.769	MGP_PahariEiJ_G0030987	Dazap1	78	30.769
MGP_PahariEiJ_G0029754	-	70	32.308	MGP_PahariEiJ_G0017224	Hnrnpd	71	32.051
MGP_PahariEiJ_G0029754	-	77	31.944	MGP_PahariEiJ_G0018079	Msi2	64	31.944

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0029754	-	90	80.000	ENSBTAG00000008135	SLIRP	100	78.378	Bos_taurus
MGP_PahariEiJ_G0029754	-	91	74.257	ENSBTAG00000050457	-	99	74.257	Bos_taurus
MGP_PahariEiJ_G0029754	-	90	80.000	ENSCAFG00000017230	SLIRP	100	78.378	Canis_familiaris
MGP_PahariEiJ_G0029754	-	90	80.000	ENSCAFG00020000852	-	100	78.378	Canis_lupus_dingo
MGP_PahariEiJ_G0029754	-	100	77.477	ENSCHIG00000019077	-	100	77.477	Capra_hircus
MGP_PahariEiJ_G0029754	-	100	71.171	ENSCHIG00000002964	-	100	71.171	Capra_hircus
MGP_PahariEiJ_G0029754	-	100	71.171	ENSCPOG00000001500	-	100	71.171	Cavia_porcellus
MGP_PahariEiJ_G0029754	-	100	71.171	ENSCLAG00000008545	-	100	71.171	Chinchilla_lanigera
MGP_PahariEiJ_G0029754	-	80	61.798	ENSDNOG00000041397	-	81	61.798	Dasypus_novemcinctus
MGP_PahariEiJ_G0029754	-	100	79.279	ENSECAG00000000712	SLIRP	100	79.279	Equus_caballus
MGP_PahariEiJ_G0029754	-	89	78.788	ENSJJAG00000018723	-	100	76.577	Jaculus_jaculus
MGP_PahariEiJ_G0029754	-	90	74.000	ENSMLUG00000022403	-	100	72.072	Myotis_lucifugus
MGP_PahariEiJ_G0029754	-	100	77.477	ENSOPRG00000007560	-	100	77.477	Ochotona_princeps
MGP_PahariEiJ_G0029754	-	100	77.477	ENSOCUG00000009713	-	100	77.477	Oryctolagus_cuniculus
MGP_PahariEiJ_G0029754	-	90	67.000	ENSOGAG00000027580	-	99	65.766	Otolemur_garnettii
MGP_PahariEiJ_G0029754	-	100	64.865	ENSOARG00000016139	-	100	64.865	Ovis_aries
MGP_PahariEiJ_G0029754	-	90	79.000	ENSOARG00000002642	SLIRP	100	77.477	Ovis_aries
MGP_PahariEiJ_G0029754	-	86	62.500	ENSPCAG00000004290	-	100	60.360	Procavia_capensis
MGP_PahariEiJ_G0029754	-	70	71.795	ENSPVAG00000006420	-	70	71.795	Pteropus_vampyrus
MGP_PahariEiJ_G0029754	-	100	91.892	ENSRNOG00000012314	Slirp	100	91.892	Rattus_norvegicus
MGP_PahariEiJ_G0029754	-	100	76.577	ENSTBEG00000013979	-	100	76.577	Tupaia_belangeri
MGP_PahariEiJ_G0029754	-	70	79.487	ENSTTRG00000009328	-	100	63.063	Tursiops_truncatus