EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0030232 (Gene tree)
Gene ID: 110325347
Gene Symbol: Apex1
Alias: HAP1|Ref-1
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 2229 bases
Position: chr8:41559228-41561456
Accession: 110325347
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0084601	Exo_endo_phos	PF03372.23	3.2e-20	1	1
MGP_PahariEiJ_P0084599	Exo_endo_phos	PF03372.23	1.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0084601	-	1041	-	MGP_PahariEiJ_P0084601	289 (aa)	-	-
MGP_PahariEiJ_T0084600	-	439	-	MGP_PahariEiJ_P0084600	49 (aa)	-	-
MGP_PahariEiJ_T0084599	-	655	-	MGP_PahariEiJ_P0084599	177 (aa)	-	-
MGP_PahariEiJ_T0084598	-	1242	-	MGP_PahariEiJ_P0084598	317 (aa)	XP_021058954	UPI000A310103

Gene Model

Click here to download MGP_PahariEiJ_G0030232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0030232's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0030232	Apex1	100	94.340	ENSG00000100823	APEX1	99	97.987	Homo_sapiens
MGP_PahariEiJ_G0030232	Apex1	88	69.534	ENSAPOG00000017002	apex1	99	64.762	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0030232	Apex1	100	94.969	ENSAMEG00000005418	APEX1	100	94.969	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0030232	Apex1	88	71.223	ENSACIG00000010653	apex1	93	71.480	Amphilophus_citrinellus
MGP_PahariEiJ_G0030232	Apex1	88	69.534	ENSAOCG00000009649	apex1	89	69.675	Amphiprion_ocellaris
MGP_PahariEiJ_G0030232	Apex1	88	69.534	ENSAPEG00000021453	apex1	89	69.675	Amphiprion_percula
MGP_PahariEiJ_G0030232	Apex1	99	67.834	ENSATEG00000002883	apex1	97	67.834	Anabas_testudineus
MGP_PahariEiJ_G0030232	Apex1	100	70.405	ENSACAG00000008099	APEX1	100	68.652	Anolis_carolinensis
MGP_PahariEiJ_G0030232	Apex1	100	95.597	ENSANAG00000030117	APEX1	100	95.597	Aotus_nancymaae
MGP_PahariEiJ_G0030232	Apex1	87	72.000	ENSACLG00000018441	apex1	99	67.619	Astatotilapia_calliptera
MGP_PahariEiJ_G0030232	Apex1	100	66.562	ENSAMXG00000034699	apex1	100	66.250	Astyanax_mexicanus
MGP_PahariEiJ_G0030232	Apex1	100	93.396	ENSBTAG00000002745	APEX1	100	93.396	Bos_taurus
MGP_PahariEiJ_G0030232	Apex1	80	44.922	WBGene00001372	exo-3	88	44.922	Caenorhabditis_elegans
MGP_PahariEiJ_G0030232	Apex1	100	95.597	ENSCJAG00000009726	APEX1	100	95.597	Callithrix_jacchus
MGP_PahariEiJ_G0030232	Apex1	100	95.597	ENSCAFG00000032033	APEX1	100	95.597	Canis_familiaris
MGP_PahariEiJ_G0030232	Apex1	97	93.023	ENSCAFG00020023002	-	96	93.023	Canis_lupus_dingo
MGP_PahariEiJ_G0030232	Apex1	100	95.597	ENSCAFG00020014377	-	100	95.597	Canis_lupus_dingo
MGP_PahariEiJ_G0030232	Apex1	100	93.082	ENSCHIG00000007298	-	100	93.082	Capra_hircus
MGP_PahariEiJ_G0030232	Apex1	97	77.907	ENSCHIG00000014537	-	99	74.359	Capra_hircus
MGP_PahariEiJ_G0030232	Apex1	100	93.396	ENSTSYG00000034813	APEX1	100	93.396	Carlito_syrichta
MGP_PahariEiJ_G0030232	Apex1	85	88.192	ENSCAPG00000016235	APEX1	91	96.610	Cavia_aperea
MGP_PahariEiJ_G0030232	Apex1	100	93.711	ENSCPOG00000030909	APEX1	100	93.711	Cavia_porcellus
MGP_PahariEiJ_G0030232	Apex1	100	95.597	ENSCCAG00000033056	-	100	95.597	Cebus_capucinus
MGP_PahariEiJ_G0030232	Apex1	100	81.761	ENSCCAG00000031931	-	100	81.761	Cebus_capucinus
MGP_PahariEiJ_G0030232	Apex1	100	94.340	ENSCATG00000015580	APEX1	100	94.340	Cercocebus_atys
MGP_PahariEiJ_G0030232	Apex1	100	93.711	ENSCLAG00000001002	APEX1	100	93.711	Chinchilla_lanigera
MGP_PahariEiJ_G0030232	Apex1	100	94.025	ENSCSAG00000016670	-	100	94.025	Chlorocebus_sabaeus
MGP_PahariEiJ_G0030232	Apex1	100	94.025	ENSCSAG00000016685	-	100	94.025	Chlorocebus_sabaeus
MGP_PahariEiJ_G0030232	Apex1	100	71.473	ENSCPBG00000009567	APEX1	100	71.473	Chrysemys_picta_bellii
MGP_PahariEiJ_G0030232	Apex1	91	54.237	ENSCING00000008137	-	84	57.736	Ciona_intestinalis
MGP_PahariEiJ_G0030232	Apex1	100	47.634	ENSCSAVG00000007144	-	100	52.896	Ciona_savignyi
MGP_PahariEiJ_G0030232	Apex1	100	94.654	ENSCANG00000030726	APEX1	100	94.654	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0030232	Apex1	100	94.006	ENSCGRG00001017046	Apex1	100	94.006	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0030232	Apex1	100	94.006	ENSCGRG00000008984	Apex1	100	94.006	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0030232	Apex1	99	64.669	ENSCSEG00000017499	apex1	99	64.127	Cynoglossus_semilaevis
MGP_PahariEiJ_G0030232	Apex1	99	67.302	ENSCVAG00000022075	apex1	99	67.302	Cyprinodon_variegatus
MGP_PahariEiJ_G0030232	Apex1	100	65.931	ENSDARG00000045843	apex1	100	65.931	Danio_rerio
MGP_PahariEiJ_G0030232	Apex1	100	89.888	ENSDNOG00000042234	APEX1	95	89.623	Dasypus_novemcinctus
MGP_PahariEiJ_G0030232	Apex1	100	93.082	ENSDORG00000001616	Apex1	100	93.082	Dipodomys_ordii
MGP_PahariEiJ_G0030232	Apex1	100	93.396	ENSETEG00000004855	-	100	93.396	Echinops_telfairi
MGP_PahariEiJ_G0030232	Apex1	75	64.017	ENSEBUG00000000622	-	92	64.017	Eptatretus_burgeri
MGP_PahariEiJ_G0030232	Apex1	100	94.969	ENSEASG00005017489	APEX1	74	94.969	Equus_asinus_asinus
MGP_PahariEiJ_G0030232	Apex1	100	94.969	ENSECAG00000022325	APEX1	82	94.969	Equus_caballus
MGP_PahariEiJ_G0030232	Apex1	91	93.750	ENSEEUG00000012569	APEX1	93	94.007	Erinaceus_europaeus
MGP_PahariEiJ_G0030232	Apex1	100	65.300	ENSELUG00000021706	apex1	88	70.397	Esox_lucius
MGP_PahariEiJ_G0030232	Apex1	100	95.597	ENSFCAG00000030869	APEX1	100	95.597	Felis_catus
MGP_PahariEiJ_G0030232	Apex1	100	93.396	ENSFDAG00000006120	APEX1	100	93.396	Fukomys_damarensis
MGP_PahariEiJ_G0030232	Apex1	99	68.571	ENSFHEG00000009031	apex1	83	68.571	Fundulus_heteroclitus
MGP_PahariEiJ_G0030232	Apex1	99	62.540	ENSGMOG00000007943	apex1	99	60.952	Gadus_morhua
MGP_PahariEiJ_G0030232	Apex1	99	67.937	ENSGAFG00000005311	apex1	99	67.937	Gambusia_affinis
MGP_PahariEiJ_G0030232	Apex1	99	66.246	ENSGACG00000019497	apex1	99	69.549	Gasterosteus_aculeatus
MGP_PahariEiJ_G0030232	Apex1	100	70.846	ENSGAGG00000014999	APEX1	100	70.846	Gopherus_agassizii
MGP_PahariEiJ_G0030232	Apex1	100	94.654	ENSGGOG00000002128	APEX1	100	94.654	Gorilla_gorilla
MGP_PahariEiJ_G0030232	Apex1	99	66.984	ENSHBUG00000005894	apex1	99	66.984	Haplochromis_burtoni
MGP_PahariEiJ_G0030232	Apex1	100	93.711	ENSHGLG00000002848	APEX1	100	93.711	Heterocephalus_glaber_female
MGP_PahariEiJ_G0030232	Apex1	100	93.711	ENSHGLG00100017878	APEX1	100	93.711	Heterocephalus_glaber_male
MGP_PahariEiJ_G0030232	Apex1	99	66.772	ENSHCOG00000009961	apex1	89	70.758	Hippocampus_comes
MGP_PahariEiJ_G0030232	Apex1	100	67.712	ENSIPUG00000005799	apex1	100	67.398	Ictalurus_punctatus
MGP_PahariEiJ_G0030232	Apex1	100	93.711	ENSSTOG00000010096	APEX1	100	93.711	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0030232	Apex1	100	83.333	ENSJJAG00000003660	-	100	83.333	Jaculus_jaculus
MGP_PahariEiJ_G0030232	Apex1	100	92.767	ENSJJAG00000012067	-	100	92.767	Jaculus_jaculus
MGP_PahariEiJ_G0030232	Apex1	95	85.866	ENSJJAG00000020465	-	89	86.641	Jaculus_jaculus
MGP_PahariEiJ_G0030232	Apex1	99	66.984	ENSKMAG00000021171	apex1	99	66.984	Kryptolebias_marmoratus
MGP_PahariEiJ_G0030232	Apex1	99	64.127	ENSLBEG00000010248	apex1	99	64.127	Labrus_bergylta
MGP_PahariEiJ_G0030232	Apex1	80	31.783	ENSLACG00000000865	APEX2	50	31.783	Latimeria_chalumnae
MGP_PahariEiJ_G0030232	Apex1	100	66.562	ENSLACG00000008617	APEX1	100	65.625	Latimeria_chalumnae
MGP_PahariEiJ_G0030232	Apex1	100	66.460	ENSLOCG00000015516	apex1	87	71.119	Lepisosteus_oculatus
MGP_PahariEiJ_G0030232	Apex1	100	92.453	ENSLAFG00000021872	APEX1	100	92.453	Loxodonta_africana
MGP_PahariEiJ_G0030232	Apex1	100	94.025	ENSMFAG00000002565	APEX1	100	94.025	Macaca_fascicularis
MGP_PahariEiJ_G0030232	Apex1	100	94.025	ENSMMUG00000048039	APEX1	100	94.025	Macaca_mulatta
MGP_PahariEiJ_G0030232	Apex1	100	94.025	ENSMNEG00000036944	APEX1	100	94.025	Macaca_nemestrina
MGP_PahariEiJ_G0030232	Apex1	100	94.340	ENSMLEG00000042125	APEX1	100	94.340	Mandrillus_leucophaeus
MGP_PahariEiJ_G0030232	Apex1	99	67.302	ENSMAMG00000023526	apex1	99	67.302	Mastacembelus_armatus
MGP_PahariEiJ_G0030232	Apex1	87	72.000	ENSMZEG00005014187	apex1	99	67.619	Maylandia_zebra
MGP_PahariEiJ_G0030232	Apex1	100	94.322	ENSMAUG00000013994	Apex1	100	92.744	Mesocricetus_auratus
MGP_PahariEiJ_G0030232	Apex1	100	94.654	ENSMICG00000043554	APEX1	100	94.654	Microcebus_murinus
MGP_PahariEiJ_G0030232	Apex1	100	94.953	ENSMOCG00000013721	Apex1	100	94.953	Microtus_ochrogaster
MGP_PahariEiJ_G0030232	Apex1	99	64.263	ENSMMOG00000010031	apex1	97	63.636	Mola_mola
MGP_PahariEiJ_G0030232	Apex1	100	85.000	ENSMODG00000007125	APEX1	100	85.312	Monodelphis_domestica
MGP_PahariEiJ_G0030232	Apex1	88	64.158	ENSMALG00000011699	apex1	74	64.260	Monopterus_albus
MGP_PahariEiJ_G0030232	Apex1	100	98.305	MGP_CAROLIEiJ_G0019209	Apex1	100	98.305	Mus_caroli
MGP_PahariEiJ_G0030232	Apex1	100	99.054	ENSMUSG00000035960	Apex1	100	99.065	Mus_musculus
MGP_PahariEiJ_G0030232	Apex1	100	99.054	MGP_SPRETEiJ_G0020101	Apex1	100	99.054	Mus_spretus
MGP_PahariEiJ_G0030232	Apex1	100	94.062	ENSMLUG00000028957	APEX1	100	91.562	Myotis_lucifugus
MGP_PahariEiJ_G0030232	Apex1	100	71.348	ENSNGAG00000021748	-	99	71.069	Nannospalax_galili
MGP_PahariEiJ_G0030232	Apex1	100	94.340	ENSNGAG00000002725	-	100	94.340	Nannospalax_galili
MGP_PahariEiJ_G0030232	Apex1	87	71.636	ENSNBRG00000005334	apex1	91	67.302	Neolamprologus_brichardi
MGP_PahariEiJ_G0030232	Apex1	100	94.969	ENSNLEG00000010839	APEX1	100	94.969	Nomascus_leucogenys
MGP_PahariEiJ_G0030232	Apex1	100	86.120	ENSMEUG00000014519	APEX1	100	84.013	Notamacropus_eugenii
MGP_PahariEiJ_G0030232	Apex1	100	92.767	ENSOPRG00000014029	APEX1	100	90.881	Ochotona_princeps
MGP_PahariEiJ_G0030232	Apex1	100	94.025	ENSODEG00000001703	-	100	94.025	Octodon_degus
MGP_PahariEiJ_G0030232	Apex1	100	70.988	ENSODEG00000006583	-	100	70.988	Octodon_degus
MGP_PahariEiJ_G0030232	Apex1	100	75.281	ENSODEG00000004777	-	99	75.405	Octodon_degus
MGP_PahariEiJ_G0030232	Apex1	88	71.942	ENSONIG00000012089	apex1	99	67.937	Oreochromis_niloticus
MGP_PahariEiJ_G0030232	Apex1	90	83.158	ENSOANG00000008836	APEX1	80	78.704	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0030232	Apex1	100	94.654	ENSOCUG00000005022	APEX1	100	94.654	Oryctolagus_cuniculus
MGP_PahariEiJ_G0030232	Apex1	99	67.610	ENSORLG00000012378	apex1	99	67.610	Oryzias_latipes
MGP_PahariEiJ_G0030232	Apex1	99	67.610	ENSORLG00020021371	apex1	99	67.610	Oryzias_latipes_hni
MGP_PahariEiJ_G0030232	Apex1	99	67.610	ENSORLG00015020089	apex1	99	67.610	Oryzias_latipes_hsok
MGP_PahariEiJ_G0030232	Apex1	99	66.984	ENSOMEG00000018876	apex1	99	66.984	Oryzias_melastigma
MGP_PahariEiJ_G0030232	Apex1	100	93.396	ENSOGAG00000013335	-	100	93.396	Otolemur_garnettii
MGP_PahariEiJ_G0030232	Apex1	100	88.660	ENSOGAG00000029355	-	100	88.660	Otolemur_garnettii
MGP_PahariEiJ_G0030232	Apex1	97	89.610	ENSOARG00000001876	-	100	89.610	Ovis_aries
MGP_PahariEiJ_G0030232	Apex1	98	82.184	ENSOARG00000014424	-	99	77.389	Ovis_aries
MGP_PahariEiJ_G0030232	Apex1	100	92.138	ENSOARG00000019740	-	100	92.138	Ovis_aries
MGP_PahariEiJ_G0030232	Apex1	100	94.654	ENSPPAG00000038760	APEX1	100	94.654	Pan_paniscus
MGP_PahariEiJ_G0030232	Apex1	100	95.912	ENSPPRG00000011794	APEX1	100	95.912	Panthera_pardus
MGP_PahariEiJ_G0030232	Apex1	100	95.597	ENSPTIG00000014829	APEX1	100	95.597	Panthera_tigris_altaica
MGP_PahariEiJ_G0030232	Apex1	100	94.654	ENSPTRG00000006093	APEX1	100	94.654	Pan_troglodytes
MGP_PahariEiJ_G0030232	Apex1	100	94.340	ENSPANG00000022757	APEX1	100	94.340	Papio_anubis
MGP_PahariEiJ_G0030232	Apex1	87	68.592	ENSPKIG00000003504	apex1	100	63.354	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0030232	Apex1	100	54.079	ENSPMGG00000016596	apex1	73	67.078	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0030232	Apex1	100	96.845	ENSPEMG00000019097	Apex1	100	96.845	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0030232	Apex1	95	65.894	ENSPMAG00000007275	-	94	68.345	Petromyzon_marinus
MGP_PahariEiJ_G0030232	Apex1	100	84.639	ENSPCIG00000023274	APEX1	100	84.735	Phascolarctos_cinereus
MGP_PahariEiJ_G0030232	Apex1	99	67.937	ENSPFOG00000004178	apex1	99	67.937	Poecilia_formosa
MGP_PahariEiJ_G0030232	Apex1	99	67.823	ENSPLAG00000012779	apex1	99	67.619	Poecilia_latipinna
MGP_PahariEiJ_G0030232	Apex1	99	67.937	ENSPMEG00000019623	apex1	99	67.937	Poecilia_mexicana
MGP_PahariEiJ_G0030232	Apex1	99	67.302	ENSPREG00000014298	apex1	99	67.302	Poecilia_reticulata
MGP_PahariEiJ_G0030232	Apex1	100	94.025	ENSPPYG00000005565	APEX1	100	94.025	Pongo_abelii
MGP_PahariEiJ_G0030232	Apex1	100	91.195	ENSPCAG00000010376	APEX1	100	91.195	Procavia_capensis
MGP_PahariEiJ_G0030232	Apex1	100	94.654	ENSPCOG00000021564	APEX1	100	94.654	Propithecus_coquereli
MGP_PahariEiJ_G0030232	Apex1	100	94.062	ENSPVAG00000010736	APEX1	100	91.250	Pteropus_vampyrus
MGP_PahariEiJ_G0030232	Apex1	87	72.000	ENSPNYG00000023940	apex1	99	67.619	Pundamilia_nyererei
MGP_PahariEiJ_G0030232	Apex1	100	61.453	ENSPNAG00000020897	apex1	96	65.424	Pygocentrus_nattereri
MGP_PahariEiJ_G0030232	Apex1	100	97.476	ENSRNOG00000009663	Apex1	100	97.476	Rattus_norvegicus
MGP_PahariEiJ_G0030232	Apex1	100	94.340	ENSRBIG00000038325	APEX1	99	94.340	Rhinopithecus_bieti
MGP_PahariEiJ_G0030232	Apex1	100	95.283	ENSSBOG00000018921	-	100	95.283	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0030232	Apex1	100	81.073	ENSSBOG00000031372	-	100	81.073	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0030232	Apex1	100	83.951	ENSSHAG00000013524	APEX1	100	83.436	Sarcophilus_harrisii
MGP_PahariEiJ_G0030232	Apex1	100	63.407	ENSSFOG00015001948	apex1	100	63.407	Scleropages_formosus
MGP_PahariEiJ_G0030232	Apex1	99	65.714	ENSSMAG00000013348	apex1	99	65.714	Scophthalmus_maximus
MGP_PahariEiJ_G0030232	Apex1	99	66.032	ENSSDUG00000016377	apex1	99	66.032	Seriola_dumerili
MGP_PahariEiJ_G0030232	Apex1	99	66.667	ENSSLDG00000023005	apex1	99	66.667	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0030232	Apex1	99	68.038	ENSSPUG00000000531	APEX1	93	73.188	Sphenodon_punctatus
MGP_PahariEiJ_G0030232	Apex1	99	66.032	ENSSPAG00000000458	apex1	99	66.032	Stegastes_partitus
MGP_PahariEiJ_G0030232	Apex1	100	58.192	ENSSSCG00000039705	-	100	55.728	Sus_scrofa
MGP_PahariEiJ_G0030232	Apex1	100	94.654	ENSSSCG00000040060	-	100	94.654	Sus_scrofa
MGP_PahariEiJ_G0030232	Apex1	74	61.017	ENSTGUG00000014378	APEX1	100	61.017	Taeniopygia_guttata
MGP_PahariEiJ_G0030232	Apex1	88	67.986	ENSTRUG00000004268	apex1	84	68.231	Takifugu_rubripes
MGP_PahariEiJ_G0030232	Apex1	99	64.127	ENSTNIG00000005778	apex1	99	63.810	Tetraodon_nigroviridis
MGP_PahariEiJ_G0030232	Apex1	100	91.509	ENSTBEG00000006405	APEX1	100	91.509	Tupaia_belangeri
MGP_PahariEiJ_G0030232	Apex1	74	94.492	ENSTTRG00000007860	APEX1	100	94.492	Tursiops_truncatus
MGP_PahariEiJ_G0030232	Apex1	100	94.654	ENSUAMG00000010457	APEX1	100	94.654	Ursus_americanus
MGP_PahariEiJ_G0030232	Apex1	100	94.654	ENSUMAG00000009178	APEX1	100	94.654	Ursus_maritimus
MGP_PahariEiJ_G0030232	Apex1	74	89.407	ENSVPAG00000005083	APEX1	100	89.407	Vicugna_pacos
MGP_PahariEiJ_G0030232	Apex1	100	95.597	ENSVVUG00000009010	APEX1	100	95.597	Vulpes_vulpes
MGP_PahariEiJ_G0030232	Apex1	100	66.250	ENSXETG00000024773	apex1	100	64.780	Xenopus_tropicalis
MGP_PahariEiJ_G0030232	Apex1	99	68.571	ENSXCOG00000015233	apex1	99	68.571	Xiphophorus_couchianus
MGP_PahariEiJ_G0030232	Apex1	99	68.571	ENSXMAG00000006195	apex1	99	68.571	Xiphophorus_maculatus