EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_PahariEiJ_G0030359 (Gene tree)
Gene ID
110325221
Gene Symbol
Pspc1
Alias
5730470C09Rik|PSP1
Full Name
paraspeckle component 1
Gene Type
protein_coding
Species
Mus_pahari
Status
putative
Strand
Minus strand
Length
62246 bases
Position
chr8:47784314-47846559
Accession
110325221
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_PahariEiJ_P0085049RRM_1PF00076.223.3e-3212
MGP_PahariEiJ_P0085049RRM_1PF00076.223.3e-3222
MGP_PahariEiJ_P0085048RRM_1PF00076.224.7e-3212
MGP_PahariEiJ_P0085048RRM_1PF00076.224.7e-3222
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_PahariEiJ_T0085051-601-MGP_PahariEiJ_P008505158 (aa)--
MGP_PahariEiJ_T0085050-522--- (aa)--
MGP_PahariEiJ_T0085048-2388-MGP_PahariEiJ_P0085048523 (aa)XP_021058682UPI000A314211
MGP_PahariEiJ_T0085049-2868-MGP_PahariEiJ_P0085049466 (aa)--
Gene Model
Click here to download MGP_PahariEiJ_G0030359's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0030359's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_PahariEiJ_G0030359Pspc18467.347MGP_PahariEiJ_G0031826Nono8066.230
MGP_PahariEiJ_G0030359Pspc18471.429MGP_PahariEiJ_G0028818Sfpq5565.891
MGP_PahariEiJ_G0030359Pspc16941.304MGP_PahariEiJ_G0030981Cirbp6834.247
MGP_PahariEiJ_G0030359Pspc19336.066MGP_PahariEiJ_G0014013-7733.036
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_PahariEiJ_G0030359Pspc110097.328ENSG00000121390PSPC110097.328Homo_sapiens
MGP_PahariEiJ_G0030359Pspc18975.000ENSAPOG00000015946pspc18172.477Acanthochromis_polyacanthus
MGP_PahariEiJ_G0030359Pspc110096.947ENSAMEG00000017420PSPC110096.947Ailuropoda_melanoleuca
MGP_PahariEiJ_G0030359Pspc19959.149ENSACIG00000018695pspc18758.898Amphilophus_citrinellus
MGP_PahariEiJ_G0030359Pspc18974.519ENSAOCG00000005279pspc19366.000Amphiprion_ocellaris
MGP_PahariEiJ_G0030359Pspc18974.519ENSAPEG00000015927pspc18172.018Amphiprion_percula
MGP_PahariEiJ_G0030359Pspc18469.388ENSATEG00000004878pspc19654.839Anabas_testudineus
MGP_PahariEiJ_G0030359Pspc18473.469ENSAPLG00000003643SFPQ6969.126Anas_platyrhynchos
MGP_PahariEiJ_G0030359Pspc17793.317ENSAPLG00000006246PSPC110093.317Anas_platyrhynchos
MGP_PahariEiJ_G0030359Pspc19886.638ENSACAG00000002093PSPC19985.143Anolis_carolinensis
MGP_PahariEiJ_G0030359Pspc18471.429ENSACAG00000013307-5665.027Anolis_carolinensis
MGP_PahariEiJ_G0030359Pspc110097.519ENSANAG00000000059PSPC110097.519Aotus_nancymaae
MGP_PahariEiJ_G0030359Pspc19955.765ENSACLG00000027220pspc110053.761Astatotilapia_calliptera
MGP_PahariEiJ_G0030359Pspc19968.565ENSAMXG00000036881pspc19069.919Astyanax_mexicanus
MGP_PahariEiJ_G0030359Pspc110095.038ENSBTAG00000003934PSPC110094.466Bos_taurus
MGP_PahariEiJ_G0030359Pspc110097.519ENSCJAG00000004554PSPC110097.519Callithrix_jacchus
MGP_PahariEiJ_G0030359Pspc110097.137ENSCAFG00020002009PSPC110097.137Canis_lupus_dingo
MGP_PahariEiJ_G0030359Pspc110095.038ENSCHIG00000016708PSPC110094.466Capra_hircus
MGP_PahariEiJ_G0030359Pspc18087.470ENSTSYG00000032882PSPC19384.834Carlito_syrichta
MGP_PahariEiJ_G0030359Pspc19996.328ENSCPOG00000000395PSPC110094.656Cavia_porcellus
MGP_PahariEiJ_G0030359Pspc110097.519ENSCCAG00000033498PSPC110097.519Cebus_capucinus
MGP_PahariEiJ_G0030359Pspc110096.947ENSCATG00000036434PSPC110096.947Cercocebus_atys
MGP_PahariEiJ_G0030359Pspc18986.910ENSCLAG00000005241PSPC110086.910Chinchilla_lanigera
MGP_PahariEiJ_G0030359Pspc110090.649ENSCHOG00000008913PSPC110090.458Choloepus_hoffmanni
MGP_PahariEiJ_G0030359Pspc19987.048ENSCPBG00000020859PSPC19987.259Chrysemys_picta_bellii
MGP_PahariEiJ_G0030359Pspc19158.491ENSCSAVG00000003533-6455.882Ciona_savignyi
MGP_PahariEiJ_G0030359Pspc17884.729ENSCANG00000018948PSPC18799.620Colobus_angolensis_palliatus
MGP_PahariEiJ_G0030359Pspc110098.662ENSCGRG00001018368Pspc110098.662Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0030359Pspc110098.662ENSCGRG00000011724Pspc110098.662Cricetulus_griseus_crigri
MGP_PahariEiJ_G0030359Pspc18163.830ENSCSEG00000008899-6565.354Cynoglossus_semilaevis
MGP_PahariEiJ_G0030359Pspc18569.697ENSCVAG00000007679-9263.265Cyprinodon_variegatus
MGP_PahariEiJ_G0030359Pspc19968.230ENSDARG00000006621pspc110067.470Danio_rerio
MGP_PahariEiJ_G0030359Pspc110096.374ENSDNOG00000011078PSPC110096.565Dasypus_novemcinctus
MGP_PahariEiJ_G0030359Pspc110094.275ENSDORG00000016050Pspc110094.275Dipodomys_ordii
MGP_PahariEiJ_G0030359Pspc155100.000ENSETEG00000000502-72100.000Echinops_telfairi
MGP_PahariEiJ_G0030359Pspc18664.428ENSEBUG00000003964-6272.254Eptatretus_burgeri
MGP_PahariEiJ_G0030359Pspc18444.898ENSEBUG00000010133pspc17848.822Eptatretus_burgeri
MGP_PahariEiJ_G0030359Pspc110097.132ENSEASG00005000119PSPC110097.132Equus_asinus_asinus
MGP_PahariEiJ_G0030359Pspc110097.132ENSECAG00000017286PSPC110097.132Equus_caballus
MGP_PahariEiJ_G0030359Pspc18489.796ENSEEUG00000011288-8881.988Erinaceus_europaeus
MGP_PahariEiJ_G0030359Pspc19968.499ENSELUG00000003746pspc19472.010Esox_lucius
MGP_PahariEiJ_G0030359Pspc110097.137ENSFCAG00000027841PSPC110097.137Felis_catus
MGP_PahariEiJ_G0030359Pspc19987.763ENSFALG00000008750PSPC19987.763Ficedula_albicollis
MGP_PahariEiJ_G0030359Pspc110093.499ENSFDAG00000002617PSPC110093.499Fukomys_damarensis
MGP_PahariEiJ_G0030359Pspc18477.551ENSGMOG00000015074pspc19262.749Gadus_morhua
MGP_PahariEiJ_G0030359Pspc19987.097ENSGALG00000017142PSPC19987.716Gallus_gallus
MGP_PahariEiJ_G0030359Pspc18467.347ENSGAFG00000006327pspc17275.072Gambusia_affinis
MGP_PahariEiJ_G0030359Pspc18669.307ENSGACG00000014901pspc19273.171Gasterosteus_aculeatus
MGP_PahariEiJ_G0030359Pspc19985.985ENSGAGG00000019164PSPC19987.259Gopherus_agassizii
MGP_PahariEiJ_G0030359Pspc18471.429ENSGAGG00000017325-5866.580Gopherus_agassizii
MGP_PahariEiJ_G0030359Pspc110097.137ENSGGOG00000003414PSPC110097.137Gorilla_gorilla
MGP_PahariEiJ_G0030359Pspc19966.250ENSHBUG00000001139pspc110063.216Haplochromis_burtoni
MGP_PahariEiJ_G0030359Pspc110095.611ENSHGLG00000018811PSPC110094.656Heterocephalus_glaber_female
MGP_PahariEiJ_G0030359Pspc18491.837ENSHGLG00100007962PSPC110092.264Heterocephalus_glaber_male
MGP_PahariEiJ_G0030359Pspc18270.312ENSHCOG00000013251pspc18369.600Hippocampus_comes
MGP_PahariEiJ_G0030359Pspc18877.295ENSIPUG00000013192pspc19172.577Ictalurus_punctatus
MGP_PahariEiJ_G0030359Pspc110097.710ENSSTOG00000026833PSPC110097.710Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0030359Pspc110097.514ENSJJAG00000018334Pspc110097.514Jaculus_jaculus
MGP_PahariEiJ_G0030359Pspc18463.265ENSKMAG00000013525-9649.714Kryptolebias_marmoratus
MGP_PahariEiJ_G0030359Pspc18871.498ENSLBEG00000004474pspc17275.291Labrus_bergylta
MGP_PahariEiJ_G0030359Pspc19977.684ENSLACG00000010762PSPC19977.256Latimeria_chalumnae
MGP_PahariEiJ_G0030359Pspc19978.525ENSLOCG00000010832pspc19977.395Lepisosteus_oculatus
MGP_PahariEiJ_G0030359Pspc110095.793ENSLAFG00000010968PSPC110095.793Loxodonta_africana
MGP_PahariEiJ_G0030359Pspc110097.328ENSMFAG00000032728PSPC110097.328Macaca_fascicularis
MGP_PahariEiJ_G0030359Pspc110097.328ENSMMUG00000020262PSPC110097.328Macaca_mulatta
MGP_PahariEiJ_G0030359Pspc110097.328ENSMNEG00000027401PSPC110097.328Macaca_nemestrina
MGP_PahariEiJ_G0030359Pspc110098.250ENSMLEG00000039043PSPC110098.250Mandrillus_leucophaeus
MGP_PahariEiJ_G0030359Pspc18672.772ENSMAMG00000004333pspc18762.128Mastacembelus_armatus
MGP_PahariEiJ_G0030359Pspc18172.340ENSMZEG00005028170-6575.000Maylandia_zebra
MGP_PahariEiJ_G0030359Pspc19955.765ENSMZEG00005005726pspc110053.761Maylandia_zebra
MGP_PahariEiJ_G0030359Pspc17893.103ENSMGAG00000015134PSPC110093.103Meleagris_gallopavo
MGP_PahariEiJ_G0030359Pspc110093.133ENSMAUG00000021067Pspc110093.133Mesocricetus_auratus
MGP_PahariEiJ_G0030359Pspc110097.210ENSMICG00000013970PSPC110097.132Microcebus_murinus
MGP_PahariEiJ_G0030359Pspc110099.235ENSMOCG00000006060Pspc110099.235Microtus_ochrogaster
MGP_PahariEiJ_G0030359Pspc18168.085ENSMMOG00000004352pspc15951.929Mola_mola
MGP_PahariEiJ_G0030359Pspc19996.328ENSMODG00000008029PSPC17895.679Monodelphis_domestica
MGP_PahariEiJ_G0030359Pspc18672.030ENSMALG00000008914pspc18867.666Monopterus_albus
MGP_PahariEiJ_G0030359Pspc1100100.000MGP_CAROLIEiJ_G0019341Pspc1100100.000Mus_caroli
MGP_PahariEiJ_G0030359Pspc1100100.000ENSMUSG00000021938Pspc110099.809Mus_musculus
MGP_PahariEiJ_G0030359Pspc1100100.000MGP_SPRETEiJ_G0020232Pspc1100100.000Mus_spretus
MGP_PahariEiJ_G0030359Pspc110096.756ENSMPUG00000013347PSPC110096.756Mustela_putorius_furo
MGP_PahariEiJ_G0030359Pspc110095.636ENSMLUG00000017663PSPC110095.636Myotis_lucifugus
MGP_PahariEiJ_G0030359Pspc110097.514ENSNGAG00000011271Pspc110097.514Nannospalax_galili
MGP_PahariEiJ_G0030359Pspc18170.213ENSNBRG00000014059pspc19260.197Neolamprologus_brichardi
MGP_PahariEiJ_G0030359Pspc110097.328ENSNLEG00000001294PSPC110097.328Nomascus_leucogenys
MGP_PahariEiJ_G0030359Pspc18495.703ENSMEUG00000000476PSPC18495.703Notamacropus_eugenii
MGP_PahariEiJ_G0030359Pspc110084.351ENSODEG00000007817-10080.943Octodon_degus
MGP_PahariEiJ_G0030359Pspc19987.527ENSODEG00000019012-10084.717Octodon_degus
MGP_PahariEiJ_G0030359Pspc19966.458ENSONIG00000012010pspc19962.706Oreochromis_niloticus
MGP_PahariEiJ_G0030359Pspc17696.750ENSOANG00000009017-10096.750Ornithorhynchus_anatinus
MGP_PahariEiJ_G0030359Pspc19966.667ENSOANG00000011381-9965.143Ornithorhynchus_anatinus
MGP_PahariEiJ_G0030359Pspc110097.137ENSOCUG00000006153PSPC110097.137Oryctolagus_cuniculus
MGP_PahariEiJ_G0030359Pspc18673.881ENSORLG00000004232-8764.108Oryzias_latipes
MGP_PahariEiJ_G0030359Pspc18674.010ENSORLG00020000578PSPC18766.383Oryzias_latipes_hni
MGP_PahariEiJ_G0030359Pspc18674.010ENSORLG00015017480pspc17771.776Oryzias_latipes_hsok
MGP_PahariEiJ_G0030359Pspc110097.710ENSOGAG00000012643PSPC110097.710Otolemur_garnettii
MGP_PahariEiJ_G0030359Pspc110090.857ENSOARG00000014163PSPC110090.857Ovis_aries
MGP_PahariEiJ_G0030359Pspc18991.631ENSPPAG00000009836PSPC19696.765Pan_paniscus
MGP_PahariEiJ_G0030359Pspc110097.137ENSPPRG00000008833PSPC110097.137Panthera_pardus
MGP_PahariEiJ_G0030359Pspc110082.218ENSPTIG00000016917PSPC110082.218Panthera_tigris_altaica
MGP_PahariEiJ_G0030359Pspc19997.408ENSPTRG00000005677PSPC19997.331Pan_troglodytes
MGP_PahariEiJ_G0030359Pspc110097.137ENSPANG00000001992PSPC110097.137Papio_anubis
MGP_PahariEiJ_G0030359Pspc18779.259ENSPKIG00000003578pspc18973.069Paramormyrops_kingsleyae
MGP_PahariEiJ_G0030359Pspc19986.817ENSPSIG00000005168PSPC19986.226Pelodiscus_sinensis
MGP_PahariEiJ_G0030359Pspc18161.702ENSPMGG00000015135pspc18669.968Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0030359Pspc110099.235ENSPEMG00000015214Pspc110099.235Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0030359Pspc18438.776ENSPMAG00000004618pspc17947.692Petromyzon_marinus
MGP_PahariEiJ_G0030359Pspc19996.537ENSPCIG00000017680PSPC110095.985Phascolarctos_cinereus
MGP_PahariEiJ_G0030359Pspc19070.534ENSPFOG00000003362pspc19365.996Poecilia_formosa
MGP_PahariEiJ_G0030359Pspc18471.429ENSPLAG00000004407-5364.770Poecilia_latipinna
MGP_PahariEiJ_G0030359Pspc19070.534ENSPLAG00000011540pspc19265.996Poecilia_latipinna
MGP_PahariEiJ_G0030359Pspc18471.429ENSPMEG00000001025-5364.770Poecilia_mexicana
MGP_PahariEiJ_G0030359Pspc19070.070ENSPMEG00000008322pspc19265.191Poecilia_mexicana
MGP_PahariEiJ_G0030359Pspc19069.838ENSPREG00000007786pspc19265.594Poecilia_reticulata
MGP_PahariEiJ_G0030359Pspc110097.210ENSPPYG00000005186PSPC110096.941Pongo_abelii
MGP_PahariEiJ_G0030359Pspc178100.000ENSPCAG00000008314-6699.390Procavia_capensis
MGP_PahariEiJ_G0030359Pspc110093.511ENSPCOG00000014364PSPC110093.511Propithecus_coquereli
MGP_PahariEiJ_G0030359Pspc110092.543ENSPVAG00000005036PSPC110093.499Pteropus_vampyrus
MGP_PahariEiJ_G0030359Pspc19956.042ENSPNYG00000008893pspc110053.945Pundamilia_nyererei
MGP_PahariEiJ_G0030359Pspc19970.085ENSPNAG00000016511pspc110066.851Pygocentrus_nattereri
MGP_PahariEiJ_G0030359Pspc110099.044ENSRNOG00000020782Pspc110099.044Rattus_norvegicus
MGP_PahariEiJ_G0030359Pspc19397.131ENSRBIG00000036057PSPC110097.131Rhinopithecus_bieti
MGP_PahariEiJ_G0030359Pspc110097.137ENSRROG00000036334PSPC110097.137Rhinopithecus_roxellana
MGP_PahariEiJ_G0030359Pspc17988.164ENSSBOG00000028172PSPC19094.946Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0030359Pspc110090.684ENSSHAG00000004696PSPC110090.684Sarcophilus_harrisii
MGP_PahariEiJ_G0030359Pspc18681.000ENSSFOG00015001395pspc18978.322Scleropages_formosus
MGP_PahariEiJ_G0030359Pspc18671.883ENSSMAG00000001761pspc18674.286Scophthalmus_maximus
MGP_PahariEiJ_G0030359Pspc18675.743ENSSDUG00000010651pspc17673.832Seriola_dumerili
MGP_PahariEiJ_G0030359Pspc18469.388ENSSLDG00000004284pspc18659.072Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0030359Pspc110088.910ENSSARG00000000888PSPC110089.293Sorex_araneus
MGP_PahariEiJ_G0030359Pspc18491.837ENSSPUG00000008550PSPC19975.240Sphenodon_punctatus
MGP_PahariEiJ_G0030359Pspc18473.469ENSSPUG00000001136-5361.453Sphenodon_punctatus
MGP_PahariEiJ_G0030359Pspc18874.396ENSSPAG00000001921pspc19364.440Stegastes_partitus
MGP_PahariEiJ_G0030359Pspc110095.220ENSSSCG00000009569PSPC110095.810Sus_scrofa
MGP_PahariEiJ_G0030359Pspc18994.218ENSTGUG00000011295PSPC110094.218Taeniopygia_guttata
MGP_PahariEiJ_G0030359Pspc19462.416ENSTRUG00000011335pspc18762.099Takifugu_rubripes
MGP_PahariEiJ_G0030359Pspc18667.327ENSTNIG00000010358pspc18862.232Tetraodon_nigroviridis
MGP_PahariEiJ_G0030359Pspc19979.914ENSTBEG00000002361PSPC110075.908Tupaia_belangeri
MGP_PahariEiJ_G0030359Pspc110095.602ENSTTRG00000003343PSPC110095.602Tursiops_truncatus
MGP_PahariEiJ_G0030359Pspc18491.837ENSUAMG00000012309PSPC110097.151Ursus_americanus
MGP_PahariEiJ_G0030359Pspc19396.926ENSUMAG00000013993PSPC110096.926Ursus_maritimus
MGP_PahariEiJ_G0030359Pspc17698.500ENSVPAG00000010029PSPC110098.500Vicugna_pacos
MGP_PahariEiJ_G0030359Pspc110097.137ENSVVUG00000006414PSPC110097.416Vulpes_vulpes
MGP_PahariEiJ_G0030359Pspc18465.306ENSXCOG00000017438pspc18374.212Xiphophorus_couchianus
MGP_PahariEiJ_G0030359Pspc18465.306ENSXMAG00000007929pspc18374.499Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us