EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0030484 (Gene tree)
Gene ID: 110325398
Gene Symbol: R3hcc1
Alias: 1700020M16Rik
Full Name: R3H domain and coiled-coil containing 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 9539 bases
Position: chr8:60470817-60480355
Accession: 1919093
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0085355	R3H	PF01424.22	5.4e-16	1	1
MGP_PahariEiJ_P0085356	R3H	PF01424.22	5.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0085358	-	845	-	-	- (aa)	-	-
MGP_PahariEiJ_T0085359	-	440	-	-	- (aa)	-	-
MGP_PahariEiJ_T0085356	-	1977	-	MGP_PahariEiJ_P0085356	494 (aa)	-	-
MGP_PahariEiJ_T0085357	-	405	-	-	- (aa)	-	-
MGP_PahariEiJ_T0085355	-	1744	-	MGP_PahariEiJ_P0085355	494 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0030484's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0030484's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0030484	R3hcc1	84	80.723	ENSG00000104679	R3HCC1	100	95.349	Homo_sapiens
MGP_PahariEiJ_G0030484	R3hcc1	62	43.931	ENSAPOG00000003616	r3hcc1	65	45.806	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0030484	R3hcc1	59	41.667	ENSACIG00000017144	r3hcc1	84	39.865	Amphilophus_citrinellus
MGP_PahariEiJ_G0030484	R3hcc1	55	46.154	ENSAOCG00000003945	r3hcc1	81	45.333	Amphiprion_ocellaris
MGP_PahariEiJ_G0030484	R3hcc1	55	46.154	ENSAPEG00000003613	r3hcc1	81	44.667	Amphiprion_percula
MGP_PahariEiJ_G0030484	R3hcc1	58	39.521	ENSATEG00000023860	r3hcc1	66	42.667	Anabas_testudineus
MGP_PahariEiJ_G0030484	R3hcc1	99	42.885	ENSACAG00000016627	R3HCC1	97	42.376	Anolis_carolinensis
MGP_PahariEiJ_G0030484	R3hcc1	82	77.711	ENSANAG00000036169	R3HCC1	95	62.325	Aotus_nancymaae
MGP_PahariEiJ_G0030484	R3hcc1	99	61.010	ENSBTAG00000025830	R3HCC1	96	60.080	Bos_taurus
MGP_PahariEiJ_G0030484	R3hcc1	84	77.711	ENSCJAG00000020118	R3HCC1	99	55.311	Callithrix_jacchus
MGP_PahariEiJ_G0030484	R3hcc1	81	77.070	ENSCAFG00000009210	R3HCC1	94	58.418	Canis_familiaris
MGP_PahariEiJ_G0030484	R3hcc1	68	71.739	ENSCAFG00020012870	R3HCC1	86	54.801	Canis_lupus_dingo
MGP_PahariEiJ_G0030484	R3hcc1	99	57.576	ENSCHIG00000009107	R3HCC1	99	57.422	Capra_hircus
MGP_PahariEiJ_G0030484	R3hcc1	99	51.600	ENSTSYG00000000511	R3HCC1	77	62.926	Carlito_syrichta
MGP_PahariEiJ_G0030484	R3hcc1	90	53.778	ENSCAPG00000015813	R3HCC1	99	53.187	Cavia_aperea
MGP_PahariEiJ_G0030484	R3hcc1	99	60.976	ENSCPOG00000009696	R3HCC1	99	60.362	Cavia_porcellus
MGP_PahariEiJ_G0030484	R3hcc1	84	79.518	ENSCCAG00000037811	R3HCC1	99	55.600	Cebus_capucinus
MGP_PahariEiJ_G0030484	R3hcc1	84	80.120	ENSCATG00000032971	R3HCC1	98	94.565	Cercocebus_atys
MGP_PahariEiJ_G0030484	R3hcc1	99	60.976	ENSCLAG00000015556	R3HCC1	83	61.179	Chinchilla_lanigera
MGP_PahariEiJ_G0030484	R3hcc1	99	60.765	ENSCSAG00000016250	R3HCC1	91	62.124	Chlorocebus_sabaeus
MGP_PahariEiJ_G0030484	R3hcc1	84	80.723	ENSCANG00000029441	R3HCC1	99	57.000	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0030484	R3hcc1	100	79.074	ENSCGRG00001014977	R3hcc1	100	77.912	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0030484	R3hcc1	100	79.074	ENSCGRG00000004454	R3hcc1	100	77.912	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0030484	R3hcc1	66	47.333	ENSCSEG00000005748	r3hcc1	76	47.333	Cynoglossus_semilaevis
MGP_PahariEiJ_G0030484	R3hcc1	60	43.448	ENSDARG00000099593	r3hcc1	90	39.726	Danio_rerio
MGP_PahariEiJ_G0030484	R3hcc1	82	79.245	ENSDNOG00000007168	R3HCC1	87	77.108	Dasypus_novemcinctus
MGP_PahariEiJ_G0030484	R3hcc1	99	64.444	ENSDORG00000026365	R3hcc1	99	64.919	Dipodomys_ordii
MGP_PahariEiJ_G0030484	R3hcc1	99	51.004	ENSEASG00005018782	R3HCC1	79	61.616	Equus_asinus_asinus
MGP_PahariEiJ_G0030484	R3hcc1	82	79.245	ENSECAG00000025013	R3HCC1	96	61.336	Equus_caballus
MGP_PahariEiJ_G0030484	R3hcc1	99	58.384	ENSEEUG00000011918	R3HCC1	96	58.551	Erinaceus_europaeus
MGP_PahariEiJ_G0030484	R3hcc1	58	45.513	ENSELUG00000023650	r3hcc1	62	56.757	Esox_lucius
MGP_PahariEiJ_G0030484	R3hcc1	82	80.503	ENSFCAG00000012395	R3HCC1	95	62.475	Felis_catus
MGP_PahariEiJ_G0030484	R3hcc1	97	39.130	ENSFALG00000001646	R3HCC1	81	39.105	Ficedula_albicollis
MGP_PahariEiJ_G0030484	R3hcc1	100	61.400	ENSFDAG00000001572	R3HCC1	100	61.000	Fukomys_damarensis
MGP_PahariEiJ_G0030484	R3hcc1	56	38.732	ENSGMOG00000017590	-	69	42.857	Gadus_morhua
MGP_PahariEiJ_G0030484	R3hcc1	61	43.506	ENSGAFG00000008747	-	68	42.857	Gambusia_affinis
MGP_PahariEiJ_G0030484	R3hcc1	62	43.636	ENSGACG00000008447	r3hcc1	69	44.000	Gasterosteus_aculeatus
MGP_PahariEiJ_G0030484	R3hcc1	69	60.510	ENSGAGG00000018009	R3HCC1	51	60.510	Gopherus_agassizii
MGP_PahariEiJ_G0030484	R3hcc1	84	80.723	ENSGGOG00000013817	R3HCC1	99	61.924	Gorilla_gorilla
MGP_PahariEiJ_G0030484	R3hcc1	83	77.019	ENSHGLG00000010517	R3HCC1	92	60.630	Heterocephalus_glaber_female
MGP_PahariEiJ_G0030484	R3hcc1	83	77.019	ENSHGLG00100006388	R3HCC1	92	60.630	Heterocephalus_glaber_male
MGP_PahariEiJ_G0030484	R3hcc1	61	44.586	ENSHCOG00000011745	r3hcc1	72	44.586	Hippocampus_comes
MGP_PahariEiJ_G0030484	R3hcc1	64	42.604	ENSIPUG00000024504	r3hcc1	66	44.304	Ictalurus_punctatus
MGP_PahariEiJ_G0030484	R3hcc1	75	75.301	ENSSTOG00000027130	R3HCC1	79	75.301	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0030484	R3hcc1	99	66.000	ENSJJAG00000013075	R3hcc1	99	66.000	Jaculus_jaculus
MGP_PahariEiJ_G0030484	R3hcc1	53	43.357	ENSKMAG00000000286	r3hcc1	68	42.000	Kryptolebias_marmoratus
MGP_PahariEiJ_G0030484	R3hcc1	61	50.323	ENSLACG00000011894	R3HCC1	66	50.323	Latimeria_chalumnae
MGP_PahariEiJ_G0030484	R3hcc1	60	46.000	ENSLOCG00000015442	r3hcc1	71	46.479	Lepisosteus_oculatus
MGP_PahariEiJ_G0030484	R3hcc1	99	60.400	ENSLAFG00000016137	R3HCC1	95	58.743	Loxodonta_africana
MGP_PahariEiJ_G0030484	R3hcc1	84	79.518	ENSMFAG00000032894	R3HCC1	98	94.565	Macaca_fascicularis
MGP_PahariEiJ_G0030484	R3hcc1	84	80.120	ENSMMUG00000016655	R3HCC1	99	55.912	Macaca_mulatta
MGP_PahariEiJ_G0030484	R3hcc1	84	80.120	ENSMNEG00000043283	R3HCC1	98	94.565	Macaca_nemestrina
MGP_PahariEiJ_G0030484	R3hcc1	84	80.120	ENSMLEG00000030147	R3HCC1	99	56.112	Mandrillus_leucophaeus
MGP_PahariEiJ_G0030484	R3hcc1	59	43.678	ENSMAMG00000018146	r3hcc1	67	44.595	Mastacembelus_armatus
MGP_PahariEiJ_G0030484	R3hcc1	63	57.407	ENSMGAG00000001356	R3HCC1	64	57.407	Meleagris_gallopavo
MGP_PahariEiJ_G0030484	R3hcc1	56	79.505	ENSMAUG00000016096	R3hcc1	100	74.556	Mesocricetus_auratus
MGP_PahariEiJ_G0030484	R3hcc1	84	77.576	ENSMICG00000011146	R3HCC1	94	62.777	Microcebus_murinus
MGP_PahariEiJ_G0030484	R3hcc1	100	75.855	ENSMOCG00000018508	R3hcc1	100	76.258	Microtus_ochrogaster
MGP_PahariEiJ_G0030484	R3hcc1	100	89.676	MGP_CAROLIEiJ_G0019467	R3hcc1	100	92.510	Mus_caroli
MGP_PahariEiJ_G0030484	R3hcc1	100	90.688	ENSMUSG00000034194	R3hcc1	100	90.486	Mus_musculus
MGP_PahariEiJ_G0030484	R3hcc1	100	90.141	MGP_SPRETEiJ_G0020359	R3hcc1	100	89.940	Mus_spretus
MGP_PahariEiJ_G0030484	R3hcc1	81	79.245	ENSMPUG00000003457	R3HCC1	86	61.010	Mustela_putorius_furo
MGP_PahariEiJ_G0030484	R3hcc1	99	49.004	ENSMLUG00000000266	R3HCC1	92	56.886	Myotis_lucifugus
MGP_PahariEiJ_G0030484	R3hcc1	99	62.103	ENSNGAG00000016747	R3hcc1	99	72.892	Nannospalax_galili
MGP_PahariEiJ_G0030484	R3hcc1	91	51.304	ENSNLEG00000015944	R3HCC1	85	60.917	Nomascus_leucogenys
MGP_PahariEiJ_G0030484	R3hcc1	78	64.286	ENSMEUG00000010587	R3HCC1	97	64.881	Notamacropus_eugenii
MGP_PahariEiJ_G0030484	R3hcc1	73	73.810	ENSOPRG00000013390	R3HCC1	90	73.810	Ochotona_princeps
MGP_PahariEiJ_G0030484	R3hcc1	98	58.436	ENSODEG00000007529	R3HCC1	100	59.274	Octodon_degus
MGP_PahariEiJ_G0030484	R3hcc1	83	36.913	ENSORLG00000016816	r3hcc1	83	42.857	Oryzias_latipes
MGP_PahariEiJ_G0030484	R3hcc1	54	43.537	ENSORLG00020012005	r3hcc1	71	43.537	Oryzias_latipes_hni
MGP_PahariEiJ_G0030484	R3hcc1	54	43.537	ENSORLG00015007018	r3hcc1	71	43.537	Oryzias_latipes_hsok
MGP_PahariEiJ_G0030484	R3hcc1	58	39.157	ENSOMEG00000000816	r3hcc1	71	40.268	Oryzias_melastigma
MGP_PahariEiJ_G0030484	R3hcc1	97	70.423	ENSOGAG00000001291	R3HCC1	91	59.635	Otolemur_garnettii
MGP_PahariEiJ_G0030484	R3hcc1	99	57.895	ENSOARG00000010146	R3HCC1	96	60.243	Ovis_aries
MGP_PahariEiJ_G0030484	R3hcc1	84	80.723	ENSPPAG00000033165	R3HCC1	99	61.924	Pan_paniscus
MGP_PahariEiJ_G0030484	R3hcc1	83	78.916	ENSPPRG00000002522	R3HCC1	99	62.475	Panthera_pardus
MGP_PahariEiJ_G0030484	R3hcc1	75	79.874	ENSPTIG00000011230	R3HCC1	95	59.695	Panthera_tigris_altaica
MGP_PahariEiJ_G0030484	R3hcc1	84	81.325	ENSPTRG00000020076	R3HCC1	99	57.715	Pan_troglodytes
MGP_PahariEiJ_G0030484	R3hcc1	84	80.120	ENSPANG00000000453	R3HCC1	98	94.565	Papio_anubis
MGP_PahariEiJ_G0030484	R3hcc1	54	48.322	ENSPKIG00000014426	-	74	48.322	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0030484	R3hcc1	54	48.322	ENSPKIG00000020397	-	68	48.322	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0030484	R3hcc1	98	43.600	ENSPSIG00000017664	R3HCC1	83	58.599	Pelodiscus_sinensis
MGP_PahariEiJ_G0030484	R3hcc1	100	79.116	ENSPEMG00000007118	R3hcc1	100	78.313	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0030484	R3hcc1	91	43.833	ENSPCIG00000022718	-	72	64.198	Phascolarctos_cinereus
MGP_PahariEiJ_G0030484	R3hcc1	70	41.892	ENSPFOG00000022301	r3hcc1	65	41.892	Poecilia_formosa
MGP_PahariEiJ_G0030484	R3hcc1	58	42.254	ENSPLAG00000010794	r3hcc1	65	41.781	Poecilia_latipinna
MGP_PahariEiJ_G0030484	R3hcc1	70	41.892	ENSPMEG00000022515	r3hcc1	65	41.892	Poecilia_mexicana
MGP_PahariEiJ_G0030484	R3hcc1	58	42.466	ENSPREG00000000713	r3hcc1	64	42.466	Poecilia_reticulata
MGP_PahariEiJ_G0030484	R3hcc1	78	80.723	ENSPPYG00000018436	R3HCC1	99	59.698	Pongo_abelii
MGP_PahariEiJ_G0030484	R3hcc1	67	76.282	ENSPCAG00000012229	R3HCC1	72	76.282	Procavia_capensis
MGP_PahariEiJ_G0030484	R3hcc1	83	76.331	ENSPCOG00000027554	R3HCC1	92	78.182	Propithecus_coquereli
MGP_PahariEiJ_G0030484	R3hcc1	81	79.503	ENSPVAG00000009829	R3HCC1	95	61.224	Pteropus_vampyrus
MGP_PahariEiJ_G0030484	R3hcc1	58	44.056	ENSPNAG00000023875	r3hcc1	75	43.750	Pygocentrus_nattereri
MGP_PahariEiJ_G0030484	R3hcc1	100	85.887	ENSRNOG00000016777	AABR07018321.1	82	82.863	Rattus_norvegicus
MGP_PahariEiJ_G0030484	R3hcc1	84	80.723	ENSRBIG00000028045	R3HCC1	99	63.727	Rhinopithecus_bieti
MGP_PahariEiJ_G0030484	R3hcc1	84	80.723	ENSRROG00000031126	R3HCC1	99	57.114	Rhinopithecus_roxellana
MGP_PahariEiJ_G0030484	R3hcc1	84	80.120	ENSSBOG00000022590	R3HCC1	99	62.525	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0030484	R3hcc1	55	69.672	ENSSHAG00000016526	-	55	82.418	Sarcophilus_harrisii
MGP_PahariEiJ_G0030484	R3hcc1	55	46.104	ENSSFOG00015013507	r3hcc1	72	46.104	Scleropages_formosus
MGP_PahariEiJ_G0030484	R3hcc1	62	46.154	ENSSDUG00000022786	r3hcc1	73	44.966	Seriola_dumerili
MGP_PahariEiJ_G0030484	R3hcc1	62	46.154	ENSSLDG00000019031	r3hcc1	73	44.966	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0030484	R3hcc1	60	45.294	ENSSPAG00000013497	r3hcc1	68	47.333	Stegastes_partitus
MGP_PahariEiJ_G0030484	R3hcc1	98	55.328	ENSSSCG00000037347	-	91	53.586	Sus_scrofa
MGP_PahariEiJ_G0030484	R3hcc1	84	75.449	ENSSSCG00000039915	-	93	60.400	Sus_scrofa
MGP_PahariEiJ_G0030484	R3hcc1	61	38.554	ENSTRUG00000015880	r3hcc1	66	41.667	Takifugu_rubripes
MGP_PahariEiJ_G0030484	R3hcc1	71	76.064	ENSTTRG00000012247	R3HCC1	76	76.064	Tursiops_truncatus
MGP_PahariEiJ_G0030484	R3hcc1	82	76.829	ENSUAMG00000007344	R3HCC1	98	60.931	Ursus_americanus
MGP_PahariEiJ_G0030484	R3hcc1	81	77.070	ENSVVUG00000005056	R3HCC1	94	58.621	Vulpes_vulpes
MGP_PahariEiJ_G0030484	R3hcc1	55	42.361	ENSXCOG00000017626	r3hcc1	62	41.667	Xiphophorus_couchianus
MGP_PahariEiJ_G0030484	R3hcc1	61	41.667	ENSXMAG00000018375	r3hcc1	67	40.741	Xiphophorus_maculatus