EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0030889 (Gene tree)
Gene ID: 110326157
Gene Symbol: Pcbp3
Alias: AlphaCP-3
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 198558 bases
Position: chr9:41445161-41643718
Accession: 110326157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0086687	KH_1	PF00013.29	2.8e-55	1	3
MGP_PahariEiJ_P0086687	KH_1	PF00013.29	2.8e-55	2	3
MGP_PahariEiJ_P0086687	KH_1	PF00013.29	2.8e-55	3	3
MGP_PahariEiJ_P0086684	KH_1	PF00013.29	2.8e-55	1	3
MGP_PahariEiJ_P0086684	KH_1	PF00013.29	2.8e-55	2	3
MGP_PahariEiJ_P0086684	KH_1	PF00013.29	2.8e-55	3	3
MGP_PahariEiJ_P0086686	KH_1	PF00013.29	2.8e-55	1	3
MGP_PahariEiJ_P0086686	KH_1	PF00013.29	2.8e-55	2	3
MGP_PahariEiJ_P0086686	KH_1	PF00013.29	2.8e-55	3	3
MGP_PahariEiJ_P0086689	KH_1	PF00013.29	7.4e-19	1	1
MGP_PahariEiJ_P0086687	KH_2	PF07650.17	3.7e-15	1	1
MGP_PahariEiJ_P0086684	KH_2	PF07650.17	3.7e-15	1	1
MGP_PahariEiJ_P0086686	KH_2	PF07650.17	3.7e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0086692	-	337	-	-	- (aa)	-	-
MGP_PahariEiJ_T0086683	-	2042	-	MGP_PahariEiJ_P0086683	394 (aa)	XP_021059971	UPI000A310D3F
MGP_PahariEiJ_T0086691	-	717	-	-	- (aa)	-	-
MGP_PahariEiJ_T0086685	-	1729	-	-	- (aa)	-	-
MGP_PahariEiJ_T0086684	-	2006	XM_021204316	MGP_PahariEiJ_P0086684	371 (aa)	XP_021059975	UPI000A310CB9
MGP_PahariEiJ_T0086687	-	2525	-	MGP_PahariEiJ_P0086687	370 (aa)	-	UPI000A3097CD
MGP_PahariEiJ_T0086686	-	1741	-	MGP_PahariEiJ_P0086686	371 (aa)	-	UPI000A310CB9
MGP_PahariEiJ_T0086689	-	604	-	MGP_PahariEiJ_P0086689	160 (aa)	-	-
MGP_PahariEiJ_T0086688	-	1089	-	-	- (aa)	-	-
MGP_PahariEiJ_T0086690	-	944	-	MGP_PahariEiJ_P0086690	226 (aa)	-	UPI0001F795ED

Gene Model

Click here to download MGP_PahariEiJ_G0030889's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0030889's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0030889	Pcbp3	72	40.351	MGP_PahariEiJ_G0029485	Nova1	59	40.351
MGP_PahariEiJ_G0030889	Pcbp3	79	41.667	MGP_PahariEiJ_G0019663	Hnrnpk	75	50.649
MGP_PahariEiJ_G0030889	Pcbp3	86	35.000	MGP_PahariEiJ_G0022114	Igf2bp3	59	33.813
MGP_PahariEiJ_G0030889	Pcbp3	85	32.000	MGP_PahariEiJ_G0024870	Fubp3	79	32.000
MGP_PahariEiJ_G0030889	Pcbp3	66	31.858	MGP_PahariEiJ_G0027191	Fubp1	71	33.019
MGP_PahariEiJ_G0030889	Pcbp3	99	65.873	MGP_PahariEiJ_G0022335	Pcbp1	99	68.033
MGP_PahariEiJ_G0030889	Pcbp3	85	69.811	MGP_PahariEiJ_G0015491	Pcbp4	93	70.652
MGP_PahariEiJ_G0030889	Pcbp3	89	38.095	MGP_PahariEiJ_G0016305	Igf2bp2	65	33.939

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSG00000183570	PCBP3	100	99.448	Homo_sapiens
MGP_PahariEiJ_G0030889	Pcbp3	99	73.362	ENSAPOG00000023735	zgc:110045	99	71.930	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0030889	Pcbp3	92	74.057	ENSACIG00000002577	zgc:110045	96	74.057	Amphilophus_citrinellus
MGP_PahariEiJ_G0030889	Pcbp3	90	71.845	ENSAOCG00000005266	zgc:110045	98	71.292	Amphiprion_ocellaris
MGP_PahariEiJ_G0030889	Pcbp3	99	73.362	ENSAPEG00000000729	zgc:110045	72	72.289	Amphiprion_percula
MGP_PahariEiJ_G0030889	Pcbp3	94	67.333	ENSATEG00000011191	zgc:110045	61	77.193	Anabas_testudineus
MGP_PahariEiJ_G0030889	Pcbp3	99	73.799	ENSACLG00000019285	zgc:110045	72	72.892	Astatotilapia_calliptera
MGP_PahariEiJ_G0030889	Pcbp3	100	99.379	ENSBTAG00000030775	PCBP3	100	99.448	Bos_taurus
MGP_PahariEiJ_G0030889	Pcbp3	100	97.844	ENSCAFG00000011907	PCBP3	100	97.844	Canis_familiaris
MGP_PahariEiJ_G0030889	Pcbp3	99	96.185	ENSCHIG00000015841	PCBP3	98	96.185	Capra_hircus
MGP_PahariEiJ_G0030889	Pcbp3	96	83.607	ENSTSYG00000005254	PCBP3	94	94.142	Carlito_syrichta
MGP_PahariEiJ_G0030889	Pcbp3	100	83.051	ENSCAPG00000006767	PCBP3	91	78.591	Cavia_aperea
MGP_PahariEiJ_G0030889	Pcbp3	100	98.383	ENSCPOG00000003648	PCBP3	100	98.383	Cavia_porcellus
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSCCAG00000024561	PCBP3	100	97.574	Cebus_capucinus
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSCATG00000038419	PCBP3	100	97.305	Cercocebus_atys
MGP_PahariEiJ_G0030889	Pcbp3	100	97.844	ENSCLAG00000006667	PCBP3	100	97.844	Chinchilla_lanigera
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSCANG00000026757	PCBP3	100	97.790	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0030889	Pcbp3	100	99.730	ENSCGRG00001006836	Pcbp3	100	99.730	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0030889	Pcbp3	100	99.730	ENSCGRG00000001837	Pcbp3	100	99.730	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0030889	Pcbp3	99	72.609	ENSCSEG00000010020	zgc:110045	97	72.609	Cynoglossus_semilaevis
MGP_PahariEiJ_G0030889	Pcbp3	92	70.813	ENSCVAG00000004726	zgc:110045	94	70.813	Cyprinodon_variegatus
MGP_PahariEiJ_G0030889	Pcbp3	95	76.444	ENSDARG00000057141	zgc:110045	97	76.444	Danio_rerio
MGP_PahariEiJ_G0030889	Pcbp3	99	95.095	ENSDNOG00000049518	PCBP3	100	95.095	Dasypus_novemcinctus
MGP_PahariEiJ_G0030889	Pcbp3	99	87.097	ENSDORG00000003640	Pcbp3	99	92.276	Dipodomys_ordii
MGP_PahariEiJ_G0030889	Pcbp3	99	76.444	ENSEBUG00000009697	zgc:110045	99	77.612	Eptatretus_burgeri
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSEASG00005007068	PCBP3	100	92.183	Equus_asinus_asinus
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSECAG00000012413	PCBP3	100	92.183	Equus_caballus
MGP_PahariEiJ_G0030889	Pcbp3	99	72.727	ENSELUG00000019784	zgc:110045	76	69.697	Esox_lucius
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSFCAG00000014812	PCBP3	100	97.574	Felis_catus
MGP_PahariEiJ_G0030889	Pcbp3	100	98.137	ENSFDAG00000009117	PCBP3	100	97.844	Fukomys_damarensis
MGP_PahariEiJ_G0030889	Pcbp3	99	63.713	ENSFHEG00000018838	-	92	73.632	Fundulus_heteroclitus
MGP_PahariEiJ_G0030889	Pcbp3	97	69.957	ENSGMOG00000005953	zgc:110045	98	69.075	Gadus_morhua
MGP_PahariEiJ_G0030889	Pcbp3	92	77.830	ENSGAFG00000017864	zgc:110045	93	77.830	Gambusia_affinis
MGP_PahariEiJ_G0030889	Pcbp3	99	73.043	ENSGACG00000003044	zgc:110045	99	71.720	Gasterosteus_aculeatus
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSGGOG00000003683	PCBP3	100	97.305	Gorilla_gorilla
MGP_PahariEiJ_G0030889	Pcbp3	99	73.799	ENSHBUG00000012495	zgc:110045	99	72.515	Haplochromis_burtoni
MGP_PahariEiJ_G0030889	Pcbp3	99	97.283	ENSHGLG00000018620	PCBP3	99	97.283	Heterocephalus_glaber_female
MGP_PahariEiJ_G0030889	Pcbp3	99	97.283	ENSHGLG00100013590	PCBP3	99	97.283	Heterocephalus_glaber_male
MGP_PahariEiJ_G0030889	Pcbp3	94	74.528	ENSHCOG00000000818	zgc:110045	99	75.714	Hippocampus_comes
MGP_PahariEiJ_G0030889	Pcbp3	90	75.481	ENSIPUG00000003932	zgc:110045	77	75.481	Ictalurus_punctatus
MGP_PahariEiJ_G0030889	Pcbp3	100	98.652	ENSSTOG00000007178	PCBP3	100	98.652	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0030889	Pcbp3	100	98.383	ENSJJAG00000021192	Pcbp3	100	98.383	Jaculus_jaculus
MGP_PahariEiJ_G0030889	Pcbp3	84	80.952	ENSKMAG00000016179	-	86	85.227	Kryptolebias_marmoratus
MGP_PahariEiJ_G0030889	Pcbp3	99	70.044	ENSLBEG00000023074	zgc:110045	99	70.468	Labrus_bergylta
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSLAFG00000020835	PCBP3	100	97.935	Loxodonta_africana
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSMFAG00000034574	PCBP3	100	97.305	Macaca_fascicularis
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSMMUG00000003825	PCBP3	100	97.305	Macaca_mulatta
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSMNEG00000035551	PCBP3	100	97.305	Macaca_nemestrina
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSMLEG00000038785	PCBP3	100	97.305	Mandrillus_leucophaeus
MGP_PahariEiJ_G0030889	Pcbp3	99	73.362	ENSMAMG00000014389	zgc:110045	99	72.205	Mastacembelus_armatus
MGP_PahariEiJ_G0030889	Pcbp3	99	73.799	ENSMZEG00005011785	zgc:110045	72	72.892	Maylandia_zebra
MGP_PahariEiJ_G0030889	Pcbp3	100	99.191	ENSMAUG00000007036	Pcbp3	100	99.191	Mesocricetus_auratus
MGP_PahariEiJ_G0030889	Pcbp3	100	99.379	ENSMICG00000012679	PCBP3	100	97.035	Microcebus_murinus
MGP_PahariEiJ_G0030889	Pcbp3	100	99.461	ENSMOCG00000016127	Pcbp3	100	99.461	Microtus_ochrogaster
MGP_PahariEiJ_G0030889	Pcbp3	80	80.556	ENSMMOG00000008399	zgc:110045	85	80.556	Mola_mola
MGP_PahariEiJ_G0030889	Pcbp3	84	76.440	ENSMALG00000008763	zgc:110045	92	76.440	Monopterus_albus
MGP_PahariEiJ_G0030889	Pcbp3	100	100.000	MGP_CAROLIEiJ_G0015475	Pcbp3	100	100.000	Mus_caroli
MGP_PahariEiJ_G0030889	Pcbp3	100	100.000	ENSMUSG00000001120	Pcbp3	100	100.000	Mus_musculus
MGP_PahariEiJ_G0030889	Pcbp3	100	100.000	MGP_SPRETEiJ_G0016288	Pcbp3	100	100.000	Mus_spretus
MGP_PahariEiJ_G0030889	Pcbp3	99	95.067	ENSMLUG00000003074	PCBP3	99	93.478	Myotis_lucifugus
MGP_PahariEiJ_G0030889	Pcbp3	100	98.383	ENSNGAG00000005416	Pcbp3	100	98.383	Nannospalax_galili
MGP_PahariEiJ_G0030889	Pcbp3	99	73.799	ENSNBRG00000017646	zgc:110045	72	72.892	Neolamprologus_brichardi
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSNLEG00000002639	PCBP3	100	97.305	Nomascus_leucogenys
MGP_PahariEiJ_G0030889	Pcbp3	92	93.646	ENSMEUG00000012960	PCBP3	100	93.646	Notamacropus_eugenii
MGP_PahariEiJ_G0030889	Pcbp3	99	96.206	ENSODEG00000012873	PCBP3	100	96.206	Octodon_degus
MGP_PahariEiJ_G0030889	Pcbp3	99	73.799	ENSONIG00000010370	zgc:110045	76	72.892	Oreochromis_niloticus
MGP_PahariEiJ_G0030889	Pcbp3	87	98.201	ENSOANG00000006265	PCBP3	98	98.201	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0030889	Pcbp3	99	72.926	ENSORLG00000014385	-	72	72.289	Oryzias_latipes
MGP_PahariEiJ_G0030889	Pcbp3	99	72.926	ENSORLG00020003139	zgc:110045	87	73.585	Oryzias_latipes_hni
MGP_PahariEiJ_G0030889	Pcbp3	99	72.489	ENSOMEG00000015459	-	72	71.988	Oryzias_melastigma
MGP_PahariEiJ_G0030889	Pcbp3	100	91.398	ENSOARG00000012704	PCBP3	100	91.398	Ovis_aries
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSPPAG00000021940	PCBP3	100	97.305	Pan_paniscus
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSPPRG00000003933	PCBP3	100	97.574	Panthera_pardus
MGP_PahariEiJ_G0030889	Pcbp3	94	98.675	ENSPTIG00000012038	PCBP3	100	83.827	Panthera_tigris_altaica
MGP_PahariEiJ_G0030889	Pcbp3	94	92.715	ENSPTRG00000014010	PCBP3	100	77.473	Pan_troglodytes
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSPANG00000023631	PCBP3	100	97.305	Papio_anubis
MGP_PahariEiJ_G0030889	Pcbp3	89	74.752	ENSPMGG00000022531	-	93	73.892	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0030889	Pcbp3	80	73.889	ENSPMGG00000021588	-	72	61.404	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0030889	Pcbp3	100	99.730	ENSPEMG00000000587	Pcbp3	100	99.730	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0030889	Pcbp3	67	75.833	ENSPMAG00000004719	zgc:110045	98	72.308	Petromyzon_marinus
MGP_PahariEiJ_G0030889	Pcbp3	99	73.362	ENSPFOG00000002348	zgc:110045	98	71.810	Poecilia_formosa
MGP_PahariEiJ_G0030889	Pcbp3	92	74.057	ENSPLAG00000017488	zgc:110045	93	74.057	Poecilia_latipinna
MGP_PahariEiJ_G0030889	Pcbp3	92	77.830	ENSPMEG00000012762	zgc:110045	93	77.830	Poecilia_mexicana
MGP_PahariEiJ_G0030889	Pcbp3	99	73.362	ENSPREG00000001797	zgc:110045	94	77.358	Poecilia_reticulata
MGP_PahariEiJ_G0030889	Pcbp3	93	94.030	ENSPPYG00000011525	-	94	97.656	Pongo_abelii
MGP_PahariEiJ_G0030889	Pcbp3	89	82.286	ENSPCAG00000001454	PCBP3	100	82.286	Procavia_capensis
MGP_PahariEiJ_G0030889	Pcbp3	100	99.379	ENSPCOG00000013797	PCBP3	100	97.305	Propithecus_coquereli
MGP_PahariEiJ_G0030889	Pcbp3	92	89.565	ENSPVAG00000000832	PCBP3	83	99.130	Pteropus_vampyrus
MGP_PahariEiJ_G0030889	Pcbp3	92	74.299	ENSPNYG00000004637	zgc:110045	97	74.299	Pundamilia_nyererei
MGP_PahariEiJ_G0030889	Pcbp3	92	78.774	ENSPNAG00000004501	zgc:110045	95	78.774	Pygocentrus_nattereri
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSRROG00000034567	PCBP3	100	97.305	Rhinopithecus_roxellana
MGP_PahariEiJ_G0030889	Pcbp3	100	99.379	ENSSBOG00000005789	PCBP3	100	97.305	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0030889	Pcbp3	99	73.362	ENSSMAG00000013541	zgc:110045	92	76.712	Scophthalmus_maximus
MGP_PahariEiJ_G0030889	Pcbp3	94	70.323	ENSSDUG00000019371	zgc:110045	66	69.636	Seriola_dumerili
MGP_PahariEiJ_G0030889	Pcbp3	99	73.362	ENSSLDG00000021064	zgc:110045	72	72.590	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0030889	Pcbp3	63	100.000	ENSSARG00000007629	-	81	100.000	Sorex_araneus
MGP_PahariEiJ_G0030889	Pcbp3	99	73.362	ENSSPAG00000000563	zgc:110045	99	72.222	Stegastes_partitus
MGP_PahariEiJ_G0030889	Pcbp3	100	98.758	ENSSSCG00000023041	PCBP3	100	92.183	Sus_scrofa
MGP_PahariEiJ_G0030889	Pcbp3	53	63.953	ENSTRUG00000023273	-	62	63.953	Takifugu_rubripes
MGP_PahariEiJ_G0030889	Pcbp3	82	83.333	ENSTRUG00000017789	zgc:110045	92	83.333	Takifugu_rubripes
MGP_PahariEiJ_G0030889	Pcbp3	75	81.503	ENSTNIG00000003546	zgc:110045	85	81.503	Tetraodon_nigroviridis
MGP_PahariEiJ_G0030889	Pcbp3	99	71.300	ENSTBEG00000011882	-	73	77.253	Tupaia_belangeri
MGP_PahariEiJ_G0030889	Pcbp3	100	99.379	ENSUAMG00000006491	PCBP3	100	94.879	Ursus_americanus
MGP_PahariEiJ_G0030889	Pcbp3	100	85.600	ENSUMAG00000025403	PCBP3	100	85.600	Ursus_maritimus
MGP_PahariEiJ_G0030889	Pcbp3	99	90.489	ENSVVUG00000023862	PCBP3	100	88.674	Vulpes_vulpes
MGP_PahariEiJ_G0030889	Pcbp3	72	80.247	ENSXCOG00000005968	zgc:110045	82	80.247	Xiphophorus_couchianus
MGP_PahariEiJ_G0030889	Pcbp3	99	73.362	ENSXMAG00000008030	zgc:110045	71	72.783	Xiphophorus_maculatus