EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0031398 (Gene tree)
Gene ID: 110326277
Gene Symbol: Prdm4
Alias: 1700031E19Rik|2810470D21Rik|SC-1|SC1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 25307 bases
Position: chr9:89340515-89365821
Accession: 110326277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0088326	zf-C2H2	PF00096.26	4.6e-20	1	2
MGP_PahariEiJ_P0088326	zf-C2H2	PF00096.26	4.6e-20	2	2
MGP_PahariEiJ_P0088326	zf-met	PF12874.7	0.0003	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0088326	-	3905	XM_021204553	MGP_PahariEiJ_P0088326	804 (aa)	XP_021060212	UPI000A3141BE
MGP_PahariEiJ_T0088327	-	4086	-	MGP_PahariEiJ_P0088327	797 (aa)	-	UPI000A308869
MGP_PahariEiJ_T0088328	-	4069	-	MGP_PahariEiJ_P0088328	787 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0031398's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0031398's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0031398	Prdm4	100	94.028	ENSG00000110851	PRDM4	100	94.982	Homo_sapiens
MGP_PahariEiJ_G0031398	Prdm4	100	93.655	ENSAMEG00000016174	PRDM4	99	93.609	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0031398	Prdm4	100	86.198	ENSAPLG00000009846	PRDM4	99	85.696	Anas_platyrhynchos
MGP_PahariEiJ_G0031398	Prdm4	100	93.774	ENSANAG00000024800	PRDM4	99	93.726	Aotus_nancymaae
MGP_PahariEiJ_G0031398	Prdm4	100	93.647	ENSBTAG00000012999	PRDM4	99	93.601	Bos_taurus
MGP_PahariEiJ_G0031398	Prdm4	100	93.393	ENSCJAG00000015261	PRDM4	99	93.350	Callithrix_jacchus
MGP_PahariEiJ_G0031398	Prdm4	100	93.774	ENSCAFG00000001788	PRDM4	99	93.726	Canis_familiaris
MGP_PahariEiJ_G0031398	Prdm4	100	93.774	ENSCAFG00020004916	PRDM4	99	93.726	Canis_lupus_dingo
MGP_PahariEiJ_G0031398	Prdm4	100	93.520	ENSCHIG00000019409	PRDM4	99	93.476	Capra_hircus
MGP_PahariEiJ_G0031398	Prdm4	100	93.774	ENSTSYG00000009248	PRDM4	99	93.726	Carlito_syrichta
MGP_PahariEiJ_G0031398	Prdm4	100	89.237	ENSCAPG00000013937	PRDM4	99	89.237	Cavia_aperea
MGP_PahariEiJ_G0031398	Prdm4	100	88.696	ENSCPOG00000022385	PRDM4	100	88.696	Cavia_porcellus
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSCCAG00000036033	PRDM4	99	93.852	Cebus_capucinus
MGP_PahariEiJ_G0031398	Prdm4	100	93.647	ENSCATG00000044797	PRDM4	99	93.601	Cercocebus_atys
MGP_PahariEiJ_G0031398	Prdm4	100	90.672	ENSCLAG00000007545	PRDM4	100	91.294	Chinchilla_lanigera
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSCSAG00000002896	PRDM4	99	93.852	Chlorocebus_sabaeus
MGP_PahariEiJ_G0031398	Prdm4	71	95.833	ENSCHOG00000001744	PRDM4	85	95.283	Choloepus_hoffmanni
MGP_PahariEiJ_G0031398	Prdm4	100	86.531	ENSCPBG00000023187	PRDM4	100	85.947	Chrysemys_picta_bellii
MGP_PahariEiJ_G0031398	Prdm4	100	93.774	ENSCANG00000021804	PRDM4	99	93.726	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0031398	Prdm4	100	95.274	ENSCGRG00001015102	-	100	94.776	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0031398	Prdm4	98	94.194	ENSCGRG00000004044	-	100	94.581	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0031398	Prdm4	100	93.647	ENSDNOG00000032478	PRDM4	99	94.236	Dasypus_novemcinctus
MGP_PahariEiJ_G0031398	Prdm4	100	80.050	ENSDORG00000015081	-	100	79.925	Dipodomys_ordii
MGP_PahariEiJ_G0031398	Prdm4	94	45.492	ENSEBUG00000003775	prdm4	99	45.845	Eptatretus_burgeri
MGP_PahariEiJ_G0031398	Prdm4	100	94.155	ENSECAG00000015423	PRDM4	99	94.103	Equus_caballus
MGP_PahariEiJ_G0031398	Prdm4	95	90.413	ENSEEUG00000006569	PRDM4	99	89.880	Erinaceus_europaeus
MGP_PahariEiJ_G0031398	Prdm4	99	60.024	ENSELUG00000015265	prdm4	99	60.267	Esox_lucius
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSFCAG00000022478	PRDM4	99	93.852	Felis_catus
MGP_PahariEiJ_G0031398	Prdm4	100	86.198	ENSFALG00000013342	PRDM4	100	85.822	Ficedula_albicollis
MGP_PahariEiJ_G0031398	Prdm4	100	86.108	ENSGALG00000012619	PRDM4	99	85.607	Gallus_gallus
MGP_PahariEiJ_G0031398	Prdm4	100	86.277	ENSGAGG00000002763	PRDM4	95	85.696	Gopherus_agassizii
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSGGOG00000001244	PRDM4	99	93.852	Gorilla_gorilla
MGP_PahariEiJ_G0031398	Prdm4	100	91.105	ENSHGLG00000004590	PRDM4	98	90.966	Heterocephalus_glaber_female
MGP_PahariEiJ_G0031398	Prdm4	100	90.435	ENSHGLG00100007464	PRDM4	100	90.311	Heterocephalus_glaber_male
MGP_PahariEiJ_G0031398	Prdm4	95	61.010	ENSIPUG00000024162	prdm4	93	61.358	Ictalurus_punctatus
MGP_PahariEiJ_G0031398	Prdm4	100	93.393	ENSSTOG00000016168	PRDM4	99	93.350	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0031398	Prdm4	82	93.225	ENSJJAG00000022448	-	95	93.225	Jaculus_jaculus
MGP_PahariEiJ_G0031398	Prdm4	100	71.287	ENSLACG00000007452	PRDM4	99	71.906	Latimeria_chalumnae
MGP_PahariEiJ_G0031398	Prdm4	79	42.744	ENSLOCG00000017092	prdm4	100	53.247	Lepisosteus_oculatus
MGP_PahariEiJ_G0031398	Prdm4	98	93.909	ENSLAFG00000001483	PRDM4	100	93.909	Loxodonta_africana
MGP_PahariEiJ_G0031398	Prdm4	100	94.028	ENSMFAG00000041862	PRDM4	99	93.977	Macaca_fascicularis
MGP_PahariEiJ_G0031398	Prdm4	100	94.028	ENSMMUG00000015550	PRDM4	99	93.977	Macaca_mulatta
MGP_PahariEiJ_G0031398	Prdm4	100	94.028	ENSMNEG00000032319	PRDM4	99	93.977	Macaca_nemestrina
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSMLEG00000039607	PRDM4	99	93.852	Mandrillus_leucophaeus
MGP_PahariEiJ_G0031398	Prdm4	100	78.125	ENSMGAG00000012815	PRDM4	100	77.625	Meleagris_gallopavo
MGP_PahariEiJ_G0031398	Prdm4	100	92.884	ENSMICG00000007807	PRDM4	99	92.848	Microcebus_murinus
MGP_PahariEiJ_G0031398	Prdm4	100	94.981	ENSMOCG00000000753	Prdm4	99	94.479	Microtus_ochrogaster
MGP_PahariEiJ_G0031398	Prdm4	100	97.637	ENSMUSG00000035529	Prdm4	100	97.637	Mus_musculus
MGP_PahariEiJ_G0031398	Prdm4	100	98.369	MGP_SPRETEiJ_G0016505	Prdm4	100	98.369	Mus_spretus
MGP_PahariEiJ_G0031398	Prdm4	100	88.015	ENSMPUG00000012238	PRDM4	99	87.266	Mustela_putorius_furo
MGP_PahariEiJ_G0031398	Prdm4	100	93.774	ENSMLUG00000000767	PRDM4	99	93.726	Myotis_lucifugus
MGP_PahariEiJ_G0031398	Prdm4	100	94.730	ENSNGAG00000018627	Prdm4	100	94.730	Nannospalax_galili
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSNLEG00000006748	PRDM4	99	93.852	Nomascus_leucogenys
MGP_PahariEiJ_G0031398	Prdm4	89	86.150	ENSMEUG00000004495	PRDM4	89	86.150	Notamacropus_eugenii
MGP_PahariEiJ_G0031398	Prdm4	89	94.345	ENSOPRG00000010192	PRDM4	89	94.345	Ochotona_princeps
MGP_PahariEiJ_G0031398	Prdm4	100	88.708	ENSODEG00000014750	PRDM4	99	88.708	Octodon_degus
MGP_PahariEiJ_G0031398	Prdm4	100	87.955	ENSOANG00000005526	PRDM4	99	87.955	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0031398	Prdm4	94	94.340	ENSOCUG00000012859	PRDM4	96	94.278	Oryctolagus_cuniculus
MGP_PahariEiJ_G0031398	Prdm4	100	93.774	ENSOGAG00000011945	PRDM4	100	93.726	Otolemur_garnettii
MGP_PahariEiJ_G0031398	Prdm4	100	93.774	ENSOARG00000017955	PRDM4	99	93.726	Ovis_aries
MGP_PahariEiJ_G0031398	Prdm4	100	94.282	ENSPPAG00000038438	PRDM4	99	94.228	Pan_paniscus
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSPPRG00000004144	PRDM4	99	93.852	Panthera_pardus
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSPTIG00000005847	PRDM4	99	93.852	Panthera_tigris_altaica
MGP_PahariEiJ_G0031398	Prdm4	100	94.155	ENSPTRG00000005400	PRDM4	99	94.103	Pan_troglodytes
MGP_PahariEiJ_G0031398	Prdm4	100	94.028	ENSPANG00000022084	PRDM4	99	93.977	Papio_anubis
MGP_PahariEiJ_G0031398	Prdm4	99	59.264	ENSPKIG00000000875	prdm4	99	59.857	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0031398	Prdm4	92	79.545	ENSPSIG00000012066	PRDM4	100	79.545	Pelodiscus_sinensis
MGP_PahariEiJ_G0031398	Prdm4	100	96.361	ENSPEMG00000014598	Prdm4	100	96.361	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0031398	Prdm4	100	86.000	ENSPCIG00000009471	PRDM4	99	86.000	Phascolarctos_cinereus
MGP_PahariEiJ_G0031398	Prdm4	100	94.028	ENSPPYG00000004913	PRDM4	99	93.977	Pongo_abelii
MGP_PahariEiJ_G0031398	Prdm4	83	92.557	ENSPCAG00000009987	PRDM4	83	92.557	Procavia_capensis
MGP_PahariEiJ_G0031398	Prdm4	100	93.011	ENSPCOG00000021060	PRDM4	99	92.974	Propithecus_coquereli
MGP_PahariEiJ_G0031398	Prdm4	100	93.147	ENSPVAG00000001596	PRDM4	99	93.358	Pteropus_vampyrus
MGP_PahariEiJ_G0031398	Prdm4	100	95.614	ENSRNOG00000004962	Prdm4	100	95.238	Rattus_norvegicus
MGP_PahariEiJ_G0031398	Prdm4	100	93.774	ENSRBIG00000035488	PRDM4	99	93.726	Rhinopithecus_bieti
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSRROG00000012779	PRDM4	99	93.852	Rhinopithecus_roxellana
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSSBOG00000000403	PRDM4	99	93.852	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0031398	Prdm4	99	63.502	ENSSFOG00015023358	prdm4	98	63.502	Scleropages_formosus
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSSSCG00000000160	PRDM4	99	93.852	Sus_scrofa
MGP_PahariEiJ_G0031398	Prdm4	100	86.198	ENSTGUG00000010962	-	99	85.822	Taeniopygia_guttata
MGP_PahariEiJ_G0031398	Prdm4	74	87.372	ENSTBEG00000001732	PRDM4	84	87.372	Tupaia_belangeri
MGP_PahariEiJ_G0031398	Prdm4	100	94.028	ENSTTRG00000011056	PRDM4	99	93.977	Tursiops_truncatus
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSUAMG00000022796	PRDM4	99	93.852	Ursus_americanus
MGP_PahariEiJ_G0031398	Prdm4	100	93.901	ENSUMAG00000017231	PRDM4	99	93.852	Ursus_maritimus
MGP_PahariEiJ_G0031398	Prdm4	100	93.774	ENSVPAG00000002215	PRDM4	100	93.726	Vicugna_pacos
MGP_PahariEiJ_G0031398	Prdm4	100	93.774	ENSVVUG00000023397	PRDM4	99	93.726	Vulpes_vulpes