EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_PahariEiJ_G0031579 (Gene tree)
Gene ID
110313384
Gene Symbol
Smarca1
Alias
5730494M04Rik|Snf2l
Full Name
SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type
protein_coding
Species
Mus_pahari
Status
putative
Strand
Minus strand
Length
75345 bases
Position
chrX:38580493-38655837
Accession
110313384
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_PahariEiJ_P0088980ResIIIPF04851.154e-1211
MGP_PahariEiJ_P0088979ResIIIPF04851.151e-1111
MGP_PahariEiJ_P0088976ResIIIPF04851.151.6e-1111
MGP_PahariEiJ_P0088977ResIIIPF04851.151.6e-1111
MGP_PahariEiJ_P0088978ResIIIPF04851.151.6e-1111
MGP_PahariEiJ_P0088977DEADPF00270.291.2e-0611
MGP_PahariEiJ_P0088978DEADPF00270.291.2e-0611
MGP_PahariEiJ_P0088976DEADPF00270.291.2e-0611
MGP_PahariEiJ_P0088980DEADPF00270.292.3e-0611
MGP_PahariEiJ_P0088979DEADPF00270.293.1e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_PahariEiJ_T0088979-2304-MGP_PahariEiJ_P0088979768 (aa)--
MGP_PahariEiJ_T0088978-4790-MGP_PahariEiJ_P00889781046 (aa)-UPI000A304512
MGP_PahariEiJ_T0088977-4020XM_021187518MGP_PahariEiJ_P00889771046 (aa)XP_021043177UPI000A304512
MGP_PahariEiJ_T0088976-3989XM_021187515MGP_PahariEiJ_P00889761062 (aa)XP_021043174UPI000A307FDD
MGP_PahariEiJ_T0088980-1969-MGP_PahariEiJ_P0088980381 (aa)--
MGP_PahariEiJ_T0088981-356-MGP_PahariEiJ_P0088981116 (aa)--
MGP_PahariEiJ_T0088982-405--- (aa)--
Gene Model
Click here to download MGP_PahariEiJ_G0031579's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0031579's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_PahariEiJ_G0031579Smarca16132.381MGP_PahariEiJ_G0023933Rad54b5733.658
MGP_PahariEiJ_G0031579Smarca17244.867MGP_PahariEiJ_G0014423Hells6744.867
MGP_PahariEiJ_G0031579Smarca19284.576MGP_PahariEiJ_G0022862Smarca59384.576
MGP_PahariEiJ_G0031579Smarca16132.031MGP_PahariEiJ_G0028657Rad54l6632.866
MGP_PahariEiJ_G0031579Smarca17541.952MGP_PahariEiJ_G0026845Chd1l6242.832
MGP_PahariEiJ_G0031579Smarca16730.680MGP_PahariEiJ_G0019699-8230.353
MGP_PahariEiJ_G0031579Smarca16943.580MGP_PahariEiJ_G0023414Chd15044.547
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_PahariEiJ_G0031579Smarca110095.955ENSG00000102038SMARCA110095.955Homo_sapiens
MGP_PahariEiJ_G0031579Smarca19282.546ENSAPOG00000016035smarca59883.682Acanthochromis_polyacanthus
MGP_PahariEiJ_G0031579Smarca110093.767ENSAMEG00000015218SMARCA110093.953Ailuropoda_melanoleuca
MGP_PahariEiJ_G0031579Smarca18384.722ENSACIG00000016982smarca59983.690Amphilophus_citrinellus
MGP_PahariEiJ_G0031579Smarca19282.546ENSAOCG00000015578smarca59581.478Amphiprion_ocellaris
MGP_PahariEiJ_G0031579Smarca19282.546ENSAPEG00000011117smarca59983.710Amphiprion_percula
MGP_PahariEiJ_G0031579Smarca19680.258ENSATEG00000012894smarca59680.658Anabas_testudineus
MGP_PahariEiJ_G0031579Smarca19390.881ENSAPLG00000013149SMARCA110090.881Anas_platyrhynchos
MGP_PahariEiJ_G0031579Smarca19788.834ENSACAG00000011376SMARCA19590.159Anolis_carolinensis
MGP_PahariEiJ_G0031579Smarca19890.988ENSANAG00000023098SMARCA110090.875Aotus_nancymaae
MGP_PahariEiJ_G0031579Smarca19680.236ENSACLG00000025356smarca59582.121Astatotilapia_calliptera
MGP_PahariEiJ_G0031579Smarca18788.344ENSAMXG00000011227smarca19989.455Astyanax_mexicanus
MGP_PahariEiJ_G0031579Smarca19779.651ENSAMXG00000005709smarca59382.734Astyanax_mexicanus
MGP_PahariEiJ_G0031579Smarca110094.171ENSBTAG00000002292SMARCA110093.655Bos_taurus
MGP_PahariEiJ_G0031579Smarca19163.126WBGene00002169isw-19663.126Caenorhabditis_elegans
MGP_PahariEiJ_G0031579Smarca110095.767ENSCJAG00000002868SMARCA110095.767Callithrix_jacchus
MGP_PahariEiJ_G0031579Smarca19693.716ENSCAFG00000018673SMARCA19987.662Canis_familiaris
MGP_PahariEiJ_G0031579Smarca110095.579ENSCAFG00020001751SMARCA110095.767Canis_lupus_dingo
MGP_PahariEiJ_G0031579Smarca110094.841ENSCHIG00000009837SMARCA110094.934Capra_hircus
MGP_PahariEiJ_G0031579Smarca19596.465ENSTSYG00000004240SMARCA19996.465Carlito_syrichta
MGP_PahariEiJ_G0031579Smarca19795.521ENSCPOG00000013601SMARCA110094.079Cavia_porcellus
MGP_PahariEiJ_G0031579Smarca19892.905ENSCCAG00000030817SMARCA110092.756Cebus_capucinus
MGP_PahariEiJ_G0031579Smarca110095.989ENSCATG00000015921SMARCA110095.989Cercocebus_atys
MGP_PahariEiJ_G0031579Smarca19894.631ENSCLAG00000002171SMARCA110094.544Chinchilla_lanigera
MGP_PahariEiJ_G0031579Smarca110095.955ENSCSAG00000008460SMARCA110095.955Chlorocebus_sabaeus
MGP_PahariEiJ_G0031579Smarca19590.755ENSCPBG00000001146SMARCA19491.109Chrysemys_picta_bellii
MGP_PahariEiJ_G0031579Smarca19272.477ENSCING00000004110swi/snf9871.687Ciona_intestinalis
MGP_PahariEiJ_G0031579Smarca19371.586ENSCSAVG00000004620-10073.608Ciona_savignyi
MGP_PahariEiJ_G0031579Smarca110095.861ENSCANG00000007183SMARCA110095.861Colobus_angolensis_palliatus
MGP_PahariEiJ_G0031579Smarca110096.523ENSCGRG00001010776Smarca110096.523Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0031579Smarca19597.071ENSCGRG00000015301Smarca19997.071Cricetulus_griseus_crigri
MGP_PahariEiJ_G0031579Smarca19283.021ENSCSEG00000000328smarca59581.579Cynoglossus_semilaevis
MGP_PahariEiJ_G0031579Smarca19282.143ENSCVAG00000008668smarca59983.254Cyprinodon_variegatus
MGP_PahariEiJ_G0031579Smarca19484.464ENSDARG00000012776smarca19784.464Danio_rerio
MGP_PahariEiJ_G0031579Smarca19282.425ENSDARG00000052348smarca59382.425Danio_rerio
MGP_PahariEiJ_G0031579Smarca19993.660ENSDNOG00000004315SMARCA110093.660Dasypus_novemcinctus
MGP_PahariEiJ_G0031579Smarca110094.837ENSDORG00000009270Smarca110094.837Dipodomys_ordii
MGP_PahariEiJ_G0031579Smarca19173.354FBgn0011604Iswi9871.386Drosophila_melanogaster
MGP_PahariEiJ_G0031579Smarca17893.750ENSETEG00000017426SMARCA18693.750Echinops_telfairi
MGP_PahariEiJ_G0031579Smarca19180.785ENSEBUG00000001239smarca59580.849Eptatretus_burgeri
MGP_PahariEiJ_G0031579Smarca19294.922ENSEASG00005008218SMARCA110091.859Equus_asinus_asinus
MGP_PahariEiJ_G0031579Smarca110095.122ENSECAG00000012106SMARCA110095.216Equus_caballus
MGP_PahariEiJ_G0031579Smarca17797.351ENSEEUG00000014927SMARCA18397.351Erinaceus_europaeus
MGP_PahariEiJ_G0031579Smarca19684.819ENSELUG00000010515smarca19886.270Esox_lucius
MGP_PahariEiJ_G0031579Smarca110095.951ENSFCAG00000018496SMARCA110095.951Felis_catus
MGP_PahariEiJ_G0031579Smarca18990.337ENSFALG00000000209SMARCA19891.776Ficedula_albicollis
MGP_PahariEiJ_G0031579Smarca19594.915ENSFDAG00000009818SMARCA19894.915Fukomys_damarensis
MGP_PahariEiJ_G0031579Smarca19282.551ENSFHEG00000007687smarca59184.912Fundulus_heteroclitus
MGP_PahariEiJ_G0031579Smarca19489.157ENSGALG00000008431SMARCA19790.631Gallus_gallus
MGP_PahariEiJ_G0031579Smarca19282.347ENSGAFG00000017731smarca59581.680Gambusia_affinis
MGP_PahariEiJ_G0031579Smarca19291.872ENSGAGG00000023575SMARCA110091.872Gopherus_agassizii
MGP_PahariEiJ_G0031579Smarca19390.028ENSGGOG00000012841-9596.000Gorilla_gorilla
MGP_PahariEiJ_G0031579Smarca110094.167ENSHGLG00000003080SMARCA110094.356Heterocephalus_glaber_female
MGP_PahariEiJ_G0031579Smarca19495.305ENSHGLG00100001102SMARCA110095.305Heterocephalus_glaber_male
MGP_PahariEiJ_G0031579Smarca19282.582ENSHCOG00000005458smarca59680.758Hippocampus_comes
MGP_PahariEiJ_G0031579Smarca19680.180ENSIPUG00000005229SMARCA59781.809Ictalurus_punctatus
MGP_PahariEiJ_G0031579Smarca19585.196ENSIPUG00000016905Smarca19985.758Ictalurus_punctatus
MGP_PahariEiJ_G0031579Smarca110095.390ENSSTOG00000014524SMARCA110095.390Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0031579Smarca110095.951ENSJJAG00000002593Smarca110095.951Jaculus_jaculus
MGP_PahariEiJ_G0031579Smarca19282.787ENSKMAG00000003777smarca59581.984Kryptolebias_marmoratus
MGP_PahariEiJ_G0031579Smarca19381.579ENSLBEG00000018112smarca59581.579Labrus_bergylta
MGP_PahariEiJ_G0031579Smarca18982.372ENSLBEG00000013295SMARCA110084.324Labrus_bergylta
MGP_PahariEiJ_G0031579Smarca19687.586ENSLACG00000016697SMARCA19988.107Latimeria_chalumnae
MGP_PahariEiJ_G0031579Smarca19487.325ENSLOCG00000014591smarca19787.325Lepisosteus_oculatus
MGP_PahariEiJ_G0031579Smarca19595.626ENSLAFG00000000896SMARCA110095.626Loxodonta_africana
MGP_PahariEiJ_G0031579Smarca110095.989ENSMFAG00000002117SMARCA110095.989Macaca_fascicularis
MGP_PahariEiJ_G0031579Smarca110095.989ENSMMUG00000008818SMARCA110095.989Macaca_mulatta
MGP_PahariEiJ_G0031579Smarca110095.989ENSMNEG00000041768SMARCA110095.989Macaca_nemestrina
MGP_PahariEiJ_G0031579Smarca110095.861ENSMLEG00000043198SMARCA110095.861Mandrillus_leucophaeus
MGP_PahariEiJ_G0031579Smarca19282.551ENSMAMG00000014294smarca59581.883Mastacembelus_armatus
MGP_PahariEiJ_G0031579Smarca19680.236ENSMZEG00005009369smarca59582.121Maylandia_zebra
MGP_PahariEiJ_G0031579Smarca19588.922ENSMGAG00000007042SMARCA110088.922Meleagris_gallopavo
MGP_PahariEiJ_G0031579Smarca110097.803ENSMAUG00000008133Smarca110097.803Mesocricetus_auratus
MGP_PahariEiJ_G0031579Smarca19895.585ENSMICG00000015768SMARCA110095.198Microcebus_murinus
MGP_PahariEiJ_G0031579Smarca110097.178ENSMOCG00000009464Smarca110097.178Microtus_ochrogaster
MGP_PahariEiJ_G0031579Smarca19379.858ENSMMOG00000005547smarca59979.858Mola_mola
MGP_PahariEiJ_G0031579Smarca19888.235ENSMODG00000013187-9988.235Monodelphis_domestica
MGP_PahariEiJ_G0031579Smarca19282.172ENSMALG00000002081smarca59781.576Monopterus_albus
MGP_PahariEiJ_G0031579Smarca110099.331MGP_CAROLIEiJ_G0033034Smarca110099.331Mus_caroli
MGP_PahariEiJ_G0031579Smarca110099.349ENSMUSG00000031099Smarca110099.349Mus_musculus
MGP_PahariEiJ_G0031579Smarca110099.522MGP_SPRETEiJ_G0034192Smarca110099.522Mus_spretus
MGP_PahariEiJ_G0031579Smarca110095.319ENSMPUG00000017423SMARCA19594.512Mustela_putorius_furo
MGP_PahariEiJ_G0031579Smarca19893.342ENSMLUG00000029614SMARCA110092.379Myotis_lucifugus
MGP_PahariEiJ_G0031579Smarca110097.135ENSNGAG00000006492Smarca110097.135Nannospalax_galili
MGP_PahariEiJ_G0031579Smarca19282.755ENSNBRG00000004463smarca59982.085Neolamprologus_brichardi
MGP_PahariEiJ_G0031579Smarca19894.313ENSNLEG00000015179SMARCA19996.158Nomascus_leucogenys
MGP_PahariEiJ_G0031579Smarca19283.310ENSMEUG00000008819SMARCA19980.902Notamacropus_eugenii
MGP_PahariEiJ_G0031579Smarca19893.738ENSODEG00000012163SMARCA110093.478Octodon_degus
MGP_PahariEiJ_G0031579Smarca19680.334ENSONIG00000009993smarca59582.222Oreochromis_niloticus
MGP_PahariEiJ_G0031579Smarca19292.181ENSOANG00000002862SMARCA110092.181Ornithorhynchus_anatinus
MGP_PahariEiJ_G0031579Smarca110093.409ENSOCUG00000001047SMARCA110093.409Oryctolagus_cuniculus
MGP_PahariEiJ_G0031579Smarca19282.480ENSORLG00000021998smarca59680.658Oryzias_latipes
MGP_PahariEiJ_G0031579Smarca19282.582ENSORLG00020017679smarca59680.758Oryzias_latipes_hni
MGP_PahariEiJ_G0031579Smarca19282.480ENSORLG00015017210smarca59680.558Oryzias_latipes_hsok
MGP_PahariEiJ_G0031579Smarca19282.480ENSOMEG00000000086smarca59680.558Oryzias_melastigma
MGP_PahariEiJ_G0031579Smarca110094.798ENSOGAG00000004399SMARCA110094.145Otolemur_garnettii
MGP_PahariEiJ_G0031579Smarca19595.187ENSOARG00000014638SMARCA110096.751Ovis_aries
MGP_PahariEiJ_G0031579Smarca110095.955ENSPPAG00000034647SMARCA110095.955Pan_paniscus
MGP_PahariEiJ_G0031579Smarca110095.964ENSPPRG00000008929SMARCA110095.951Panthera_pardus
MGP_PahariEiJ_G0031579Smarca19594.423ENSPTIG00000000915SMARCA19894.423Panthera_tigris_altaica
MGP_PahariEiJ_G0031579Smarca110095.989ENSPTRG00000049876SMARCA110095.989Pan_troglodytes
MGP_PahariEiJ_G0031579Smarca110095.955ENSPANG00000003871SMARCA110095.955Papio_anubis
MGP_PahariEiJ_G0031579Smarca19187.198ENSPKIG00000013411smarca19687.447Paramormyrops_kingsleyae
MGP_PahariEiJ_G0031579Smarca19589.489ENSPSIG00000010101SMARCA110091.564Pelodiscus_sinensis
MGP_PahariEiJ_G0031579Smarca110098.567ENSPEMG00000017503Smarca110098.567Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0031579Smarca19788.889ENSPCIG00000015460SMARCA19890.557Phascolarctos_cinereus
MGP_PahariEiJ_G0031579Smarca19282.582ENSPFOG00000007649smarca59581.680Poecilia_formosa
MGP_PahariEiJ_G0031579Smarca19282.582ENSPLAG00000003363smarca59581.680Poecilia_latipinna
MGP_PahariEiJ_G0031579Smarca19282.480ENSPMEG00000019849smarca59581.579Poecilia_mexicana
MGP_PahariEiJ_G0031579Smarca19282.480ENSPREG00000023250smarca59581.579Poecilia_reticulata
MGP_PahariEiJ_G0031579Smarca19893.384ENSPPYG00000020703SMARCA110093.227Pongo_abelii
MGP_PahariEiJ_G0031579Smarca18990.247ENSPCOG00000020722SMARCA19491.605Propithecus_coquereli
MGP_PahariEiJ_G0031579Smarca19294.133ENSPVAG00000003805SMARCA19494.208Pteropus_vampyrus
MGP_PahariEiJ_G0031579Smarca17583.288ENSPNYG00000012299smarca59281.166Pundamilia_nyererei
MGP_PahariEiJ_G0031579Smarca110098.211ENSRNOG00000003762Smarca110098.211Rattus_norvegicus
MGP_PahariEiJ_G0031579Smarca110095.861ENSRROG00000034167SMARCA110095.861Rhinopithecus_roxellana
MGP_PahariEiJ_G0031579Smarca19694.123ENSSBOG00000020641SMARCA110097.056Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0031579Smarca19285.303ENSSHAG00000013518SMARCA19985.303Sarcophilus_harrisii
MGP_PahariEiJ_G0031579Smarca19381.635ENSSFOG00015016794smarca59982.988Scleropages_formosus
MGP_PahariEiJ_G0031579Smarca19684.887ENSSFOG00015009043smarca19885.956Scleropages_formosus
MGP_PahariEiJ_G0031579Smarca19381.523ENSSMAG00000004801smarca59581.523Scophthalmus_maximus
MGP_PahariEiJ_G0031579Smarca19282.245ENSSDUG00000020690smarca59581.579Seriola_dumerili
MGP_PahariEiJ_G0031579Smarca19282.245ENSSLDG00000025190smarca59581.579Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0031579Smarca18395.880ENSSARG00000000842SMARCA18497.872Sorex_araneus
MGP_PahariEiJ_G0031579Smarca19589.798ENSSPUG00000000590SMARCA19590.132Sphenodon_punctatus
MGP_PahariEiJ_G0031579Smarca19282.143ENSSPAG00000002894smarca59683.682Stegastes_partitus
MGP_PahariEiJ_G0031579Smarca19994.828ENSSSCG00000012649SMARCA110094.828Sus_scrofa
MGP_PahariEiJ_G0031579Smarca19390.476ENSTGUG00000003899-10090.476Taeniopygia_guttata
MGP_PahariEiJ_G0031579Smarca19282.551ENSTRUG00000014094smarca59581.883Takifugu_rubripes
MGP_PahariEiJ_G0031579Smarca19282.136ENSTNIG00000017717smarca59481.174Tetraodon_nigroviridis
MGP_PahariEiJ_G0031579Smarca18694.731ENSTBEG00000014973SMARCA19194.731Tupaia_belangeri
MGP_PahariEiJ_G0031579Smarca19492.362ENSTTRG00000006168SMARCA110092.362Tursiops_truncatus
MGP_PahariEiJ_G0031579Smarca110095.014ENSUAMG00000020201SMARCA110095.202Ursus_americanus
MGP_PahariEiJ_G0031579Smarca19395.112ENSUMAG00000004073SMARCA19996.897Ursus_maritimus
MGP_PahariEiJ_G0031579Smarca17498.095ENSVPAG00000010492-8098.095Vicugna_pacos
MGP_PahariEiJ_G0031579Smarca19596.517ENSVVUG00000008878SMARCA110096.781Vulpes_vulpes
MGP_PahariEiJ_G0031579Smarca19487.113ENSXETG00000001526smarca19987.113Xenopus_tropicalis
MGP_PahariEiJ_G0031579Smarca19282.245ENSXCOG00000011170smarca59781.579Xiphophorus_couchianus
MGP_PahariEiJ_G0031579Smarca19282.245ENSXMAG00000009678smarca59883.551Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us