EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0031908 (Gene tree)
Gene ID: 110313904
Gene Symbol: Pabpc5
Alias: -
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 2992 bases
Position: chrX:103749795-103752786
Accession: 110313904
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0090201	RRM_5	PF13893.6	7e-12	1	2
MGP_PahariEiJ_P0090201	RRM_5	PF13893.6	7e-12	2	2
MGP_PahariEiJ_P0090202	RRM_5	PF13893.6	7e-12	1	2
MGP_PahariEiJ_P0090202	RRM_5	PF13893.6	7e-12	2	2
MGP_PahariEiJ_P0090201	RRM_1	PF00076.22	1.1e-77	1	4
MGP_PahariEiJ_P0090201	RRM_1	PF00076.22	1.1e-77	2	4
MGP_PahariEiJ_P0090201	RRM_1	PF00076.22	1.1e-77	3	4
MGP_PahariEiJ_P0090201	RRM_1	PF00076.22	1.1e-77	4	4
MGP_PahariEiJ_P0090202	RRM_1	PF00076.22	1.1e-77	1	4
MGP_PahariEiJ_P0090202	RRM_1	PF00076.22	1.1e-77	2	4
MGP_PahariEiJ_P0090202	RRM_1	PF00076.22	1.1e-77	3	4
MGP_PahariEiJ_P0090202	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0090202	-	2268	-	MGP_PahariEiJ_P0090202	382 (aa)	XP_021044025	UPI000A30C521
MGP_PahariEiJ_T0090201	-	2459	XM_021188364	MGP_PahariEiJ_P0090201	382 (aa)	XP_021044023	UPI000A30C521

Gene Model

Click here to download MGP_PahariEiJ_G0031908's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0031908's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0031908	Pabpc5	95	56.667	MGP_PahariEiJ_G0026071	Pabpc1l	63	56.742
MGP_PahariEiJ_G0031908	Pabpc5	65	38.333	MGP_PahariEiJ_G0026757	Celf3	96	35.616
MGP_PahariEiJ_G0031908	Pabpc5	67	34.568	MGP_PahariEiJ_G0018792	Celf4	58	34.568
MGP_PahariEiJ_G0031908	Pabpc5	63	34.483	MGP_PahariEiJ_G0015171	Celf6	51	34.483
MGP_PahariEiJ_G0031908	Pabpc5	94	65.833	MGP_PahariEiJ_G0028765	Pabpc4	100	69.504
MGP_PahariEiJ_G0031908	Pabpc5	94	30.435	MGP_PahariEiJ_G0021261	Elavl1	96	30.435
MGP_PahariEiJ_G0031908	Pabpc5	95	64.463	MGP_PahariEiJ_G0019749	Pabpc1	58	64.607
MGP_PahariEiJ_G0031908	Pabpc5	93	33.333	MGP_PahariEiJ_G0022332	Tia1	84	34.247
MGP_PahariEiJ_G0031908	Pabpc5	53	32.432	MGP_PahariEiJ_G0028622	Elavl4	75	32.432
MGP_PahariEiJ_G0031908	Pabpc5	94	37.037	MGP_PahariEiJ_G0028496	Elavl2	89	37.037
MGP_PahariEiJ_G0031908	Pabpc5	96	58.082	MGP_PahariEiJ_G0026409	Pabpc4l	98	57.983
MGP_PahariEiJ_G0031908	Pabpc5	95	61.111	MGP_PahariEiJ_G0018950	Pabpc2	61	60.955
MGP_PahariEiJ_G0031908	Pabpc5	69	35.955	MGP_PahariEiJ_G0031056	-	71	34.783

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0031908	Pabpc5	99	95.801	ENSG00000174740	PABPC5	99	95.801	Homo_sapiens
MGP_PahariEiJ_G0031908	Pabpc5	99	94.488	ENSAMEG00000020114	PABPC5	100	94.488	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0031908	Pabpc5	99	95.801	ENSANAG00000005063	PABPC5	99	95.801	Aotus_nancymaae
MGP_PahariEiJ_G0031908	Pabpc5	100	93.717	ENSBTAG00000019942	PABPC5	100	93.717	Bos_taurus
MGP_PahariEiJ_G0031908	Pabpc5	99	95.276	ENSCJAG00000003665	PABPC5	99	95.276	Callithrix_jacchus
MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	ENSCAFG00000017452	PABPC5	100	93.979	Canis_familiaris
MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	ENSCHIG00000019004	PABPC5	100	93.979	Capra_hircus
MGP_PahariEiJ_G0031908	Pabpc5	100	95.026	ENSTSYG00000036351	PABPC5	100	95.026	Carlito_syrichta
MGP_PahariEiJ_G0031908	Pabpc5	99	83.246	ENSCAPG00000010714	PABPC5	100	83.246	Cavia_aperea
MGP_PahariEiJ_G0031908	Pabpc5	100	91.361	ENSCPOG00000002555	PABPC5	100	91.361	Cavia_porcellus
MGP_PahariEiJ_G0031908	Pabpc5	99	95.801	ENSCCAG00000032154	PABPC5	99	95.801	Cebus_capucinus
MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	ENSCATG00000043083	PABPC5	99	95.538	Cercocebus_atys
MGP_PahariEiJ_G0031908	Pabpc5	100	92.670	ENSCLAG00000000647	PABPC5	100	92.670	Chinchilla_lanigera
MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	ENSCSAG00000000065	PABPC5	99	95.538	Chlorocebus_sabaeus
MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	ENSCANG00000011473	PABPC5	99	95.538	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0031908	Pabpc5	100	92.408	ENSCGRG00000018699	Pabpc5	100	92.408	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0031908	Pabpc5	100	76.501	ENSETEG00000011832	PABPC5	100	76.501	Echinops_telfairi
MGP_PahariEiJ_G0031908	Pabpc5	100	94.764	ENSEASG00005014396	PABPC5	100	94.764	Equus_asinus_asinus
MGP_PahariEiJ_G0031908	Pabpc5	100	94.764	ENSECAG00000003452	PABPC5	100	94.764	Equus_caballus
MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	ENSFCAG00000004998	PABPC5	100	93.979	Felis_catus
MGP_PahariEiJ_G0031908	Pabpc5	100	93.194	ENSFDAG00000000126	PABPC5	100	93.194	Fukomys_damarensis
MGP_PahariEiJ_G0031908	Pabpc5	99	95.801	ENSGGOG00000007622	PABPC5	99	95.801	Gorilla_gorilla
MGP_PahariEiJ_G0031908	Pabpc5	95	92.202	ENSJJAG00000011960	Pabpc5	100	92.202	Jaculus_jaculus
MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	ENSMFAG00000024561	PABPC5	99	95.538	Macaca_fascicularis
MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	ENSMMUG00000011562	PABPC5	99	95.538	Macaca_mulatta
MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	ENSMNEG00000037604	PABPC5	99	95.538	Macaca_nemestrina
MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	ENSMLEG00000028318	PABPC5	99	95.538	Mandrillus_leucophaeus
MGP_PahariEiJ_G0031908	Pabpc5	100	94.241	ENSMICG00000041706	PABPC5	100	94.241	Microcebus_murinus
MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	ENSMOCG00000001554	Pabpc5	100	93.979	Microtus_ochrogaster
MGP_PahariEiJ_G0031908	Pabpc5	99	99.211	MGP_CAROLIEiJ_G0033367	Pabpc5	99	99.211	Mus_caroli
MGP_PahariEiJ_G0031908	Pabpc5	99	99.737	ENSMUSG00000034732	Pabpc5	99	99.737	Mus_musculus
MGP_PahariEiJ_G0031908	Pabpc5	99	99.737	MGP_SPRETEiJ_G0034533	Pabpc5	99	99.737	Mus_spretus
MGP_PahariEiJ_G0031908	Pabpc5	100	93.717	ENSMPUG00000018465	PABPC5	100	93.717	Mustela_putorius_furo
MGP_PahariEiJ_G0031908	Pabpc5	100	93.455	ENSMLUG00000008244	PABPC5	100	93.455	Myotis_lucifugus
MGP_PahariEiJ_G0031908	Pabpc5	95	93.119	ENSNGAG00000004371	Pabpc5	100	93.119	Nannospalax_galili
MGP_PahariEiJ_G0031908	Pabpc5	99	95.801	ENSNLEG00000035086	PABPC5	99	95.801	Nomascus_leucogenys
MGP_PahariEiJ_G0031908	Pabpc5	98	96.380	ENSOPRG00000000856	PABPC5	100	96.380	Ochotona_princeps
MGP_PahariEiJ_G0031908	Pabpc5	100	94.764	ENSOCUG00000010919	PABPC5	100	94.764	Oryctolagus_cuniculus
MGP_PahariEiJ_G0031908	Pabpc5	100	93.717	ENSOGAG00000006882	PABPC5	100	93.717	Otolemur_garnettii
MGP_PahariEiJ_G0031908	Pabpc5	100	94.241	ENSOARG00000010260	PABPC5	100	94.241	Ovis_aries
MGP_PahariEiJ_G0031908	Pabpc5	99	95.801	ENSPPAG00000007378	PABPC5	99	95.801	Pan_paniscus
MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	ENSPPRG00000010742	PABPC5	100	93.979	Panthera_pardus
MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	ENSPTIG00000001480	PABPC5	100	93.979	Panthera_tigris_altaica
MGP_PahariEiJ_G0031908	Pabpc5	99	95.801	ENSPTRG00000022078	PABPC5	99	95.801	Pan_troglodytes
MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	ENSPANG00000018282	PABPC5	99	95.538	Papio_anubis
MGP_PahariEiJ_G0031908	Pabpc5	100	93.455	ENSPEMG00000000171	Pabpc5	100	93.455	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0031908	Pabpc5	99	95.801	ENSPPYG00000020526	PABPC5	99	95.801	Pongo_abelii
MGP_PahariEiJ_G0031908	Pabpc5	99	95.636	ENSPCAG00000015577	PABPC5	100	95.636	Procavia_capensis
MGP_PahariEiJ_G0031908	Pabpc5	100	94.503	ENSPCOG00000000676	PABPC5	100	94.503	Propithecus_coquereli
MGP_PahariEiJ_G0031908	Pabpc5	100	94.764	ENSPVAG00000006465	PABPC5	100	94.764	Pteropus_vampyrus
MGP_PahariEiJ_G0031908	Pabpc5	100	97.120	ENSRNOG00000003354	Pabpc5	100	97.120	Rattus_norvegicus
MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	ENSRBIG00000011760	PABPC5	99	95.538	Rhinopithecus_bieti
MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	ENSRROG00000036708	PABPC5	99	95.538	Rhinopithecus_roxellana
MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	ENSSBOG00000008658	PABPC5	99	95.538	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0031908	Pabpc5	100	91.623	ENSSARG00000014012	PABPC5	100	91.623	Sorex_araneus
MGP_PahariEiJ_G0031908	Pabpc5	100	93.717	ENSSSCG00000040194	PABPC5	100	93.717	Sus_scrofa
MGP_PahariEiJ_G0031908	Pabpc5	100	95.288	ENSTBEG00000016482	PABPC5	100	95.288	Tupaia_belangeri
MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	ENSUAMG00000013627	PABPC5	100	93.979	Ursus_americanus
MGP_PahariEiJ_G0031908	Pabpc5	100	93.717	ENSUMAG00000023934	PABPC5	100	93.717	Ursus_maritimus
MGP_PahariEiJ_G0031908	Pabpc5	100	94.241	ENSVPAG00000001063	PABPC5	100	94.241	Vicugna_pacos
MGP_PahariEiJ_G0031908	Pabpc5	100	94.241	ENSVVUG00000013172	PABPC5	100	94.241	Vulpes_vulpes