EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0015164 (Gene tree)
Gene ID: -
Gene Symbol: Ncl
Alias: B530004O11Rik|C23
Full Name: nucleolin
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 16621 bases
Position: chr1:85891319-85907939
Accession: 97286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0019831	RRM_1	PF00076.22	5.6e-59	1	4
MGP_SPRETEiJ_P0019831	RRM_1	PF00076.22	5.6e-59	2	4
MGP_SPRETEiJ_P0019831	RRM_1	PF00076.22	5.6e-59	3	4
MGP_SPRETEiJ_P0019831	RRM_1	PF00076.22	5.6e-59	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0019836	-	661	-	MGP_SPRETEiJ_P0019836	76 (aa)	-	UPI0004621057
MGP_SPRETEiJ_T0019834	-	1058	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0019835	-	502	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0019832	-	3086	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0019833	-	603	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0019831	-	8147	-	MGP_SPRETEiJ_P0019831	707 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0015164's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0015164's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0015164	Ncl	61	82.993	ENSG00000115053	NCL	97	81.507	Homo_sapiens
MGP_SPRETEiJ_G0015164	Ncl	53	86.280	ENSAMEG00000016289	NCL	92	77.997	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0015164	Ncl	99	64.154	ENSANAG00000024378	-	94	74.242	Aotus_nancymaae
MGP_SPRETEiJ_G0015164	Ncl	53	86.807	ENSANAG00000035814	-	92	77.204	Aotus_nancymaae
MGP_SPRETEiJ_G0015164	Ncl	54	82.716	ENSBTAG00000050728	-	81	82.716	Bos_taurus
MGP_SPRETEiJ_G0015164	Ncl	64	39.224	ENSBTAG00000051320	-	83	77.165	Bos_taurus
MGP_SPRETEiJ_G0015164	Ncl	68	82.845	ENSBTAG00000026909	-	82	83.193	Bos_taurus
MGP_SPRETEiJ_G0015164	Ncl	69	81.018	ENSBTAG00000016174	NCL	92	76.842	Bos_taurus
MGP_SPRETEiJ_G0015164	Ncl	53	86.807	ENSCJAG00000013538	NCL	92	76.923	Callithrix_jacchus
MGP_SPRETEiJ_G0015164	Ncl	92	79.091	ENSCAFG00000011037	NCL	92	77.273	Canis_familiaris
MGP_SPRETEiJ_G0015164	Ncl	84	78.583	ENSCAFG00020023145	NCL	89	76.606	Canis_lupus_dingo
MGP_SPRETEiJ_G0015164	Ncl	85	77.614	ENSCHIG00000010894	-	91	77.614	Capra_hircus
MGP_SPRETEiJ_G0015164	Ncl	92	69.729	ENSCHIG00000026149	-	93	70.934	Capra_hircus
MGP_SPRETEiJ_G0015164	Ncl	75	87.225	ENSCHIG00000021052	-	82	87.225	Capra_hircus
MGP_SPRETEiJ_G0015164	Ncl	89	73.767	ENSCHIG00000012143	-	92	67.431	Capra_hircus
MGP_SPRETEiJ_G0015164	Ncl	65	71.245	ENSTSYG00000036886	-	91	66.565	Carlito_syrichta
MGP_SPRETEiJ_G0015164	Ncl	95	74.570	ENSTSYG00000029779	-	98	72.402	Carlito_syrichta
MGP_SPRETEiJ_G0015164	Ncl	92	78.215	ENSTSYG00000004355	-	92	76.702	Carlito_syrichta
MGP_SPRETEiJ_G0015164	Ncl	91	72.546	ENSCAPG00000009405	NCL	91	71.933	Cavia_aperea
MGP_SPRETEiJ_G0015164	Ncl	92	75.684	ENSCPOG00000001034	NCL	92	75.380	Cavia_porcellus
MGP_SPRETEiJ_G0015164	Ncl	53	86.807	ENSCCAG00000021040	-	92	77.778	Cebus_capucinus
MGP_SPRETEiJ_G0015164	Ncl	73	82.927	ENSCCAG00000000551	-	86	82.927	Cebus_capucinus
MGP_SPRETEiJ_G0015164	Ncl	92	78.571	ENSCATG00000037033	NCL	92	77.812	Cercocebus_atys
MGP_SPRETEiJ_G0015164	Ncl	92	75.606	ENSCLAG00000013080	NCL	92	74.545	Chinchilla_lanigera
MGP_SPRETEiJ_G0015164	Ncl	53	86.579	ENSCSAG00000006660	NCL	95	88.155	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0015164	Ncl	60	69.907	ENSCHOG00000012860	NCL	89	68.966	Choloepus_hoffmanni
MGP_SPRETEiJ_G0015164	Ncl	92	73.853	ENSCGRG00001022350	-	95	74.154	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0015164	Ncl	92	86.217	ENSCGRG00001024315	-	91	86.064	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0015164	Ncl	92	73.660	ENSCGRG00000000507	-	93	72.727	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0015164	Ncl	85	86.319	ENSCGRG00000017894	-	88	85.390	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0015164	Ncl	92	76.284	ENSDNOG00000010783	-	92	75.076	Dasypus_novemcinctus
MGP_SPRETEiJ_G0015164	Ncl	100	69.888	ENSDNOG00000046347	-	99	67.927	Dasypus_novemcinctus
MGP_SPRETEiJ_G0015164	Ncl	51	75.890	ENSDORG00000023596	-	92	67.747	Dipodomys_ordii
MGP_SPRETEiJ_G0015164	Ncl	53	86.243	ENSDORG00000012513	-	91	76.677	Dipodomys_ordii
MGP_SPRETEiJ_G0015164	Ncl	53	83.155	ENSETEG00000014756	-	86	83.245	Echinops_telfairi
MGP_SPRETEiJ_G0015164	Ncl	71	59.563	ENSETEG00000008139	-	89	59.401	Echinops_telfairi
MGP_SPRETEiJ_G0015164	Ncl	70	55.000	ENSETEG00000008553	-	88	57.143	Echinops_telfairi
MGP_SPRETEiJ_G0015164	Ncl	53	83.113	ENSETEG00000018937	-	85	72.638	Echinops_telfairi
MGP_SPRETEiJ_G0015164	Ncl	89	78.571	ENSEASG00005008488	NCL	91	79.037	Equus_asinus_asinus
MGP_SPRETEiJ_G0015164	Ncl	92	78.939	ENSECAG00000021868	NCL	92	78.485	Equus_caballus
MGP_SPRETEiJ_G0015164	Ncl	53	81.217	ENSEEUG00000005913	NCL	85	73.762	Erinaceus_europaeus
MGP_SPRETEiJ_G0015164	Ncl	92	78.820	ENSFCAG00000027622	NCL	92	77.156	Felis_catus
MGP_SPRETEiJ_G0015164	Ncl	91	77.863	ENSFDAG00000014291	NCL	92	76.183	Fukomys_damarensis
MGP_SPRETEiJ_G0015164	Ncl	92	78.723	ENSGGOG00000004300	NCL	93	86.275	Gorilla_gorilla
MGP_SPRETEiJ_G0015164	Ncl	52	78.989	ENSHGLG00000011069	-	62	75.000	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0015164	Ncl	92	77.424	ENSHGLG00000002031	-	92	75.303	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0015164	Ncl	92	77.896	ENSHGLG00100014537	-	92	75.762	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0015164	Ncl	72	78.133	ENSHGLG00100000745	-	82	78.249	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0015164	Ncl	53	84.800	ENSJJAG00000016165	Ncl	91	77.880	Jaculus_jaculus
MGP_SPRETEiJ_G0015164	Ncl	91	66.616	ENSLAFG00000013061	NCL	91	64.985	Loxodonta_africana
MGP_SPRETEiJ_G0015164	Ncl	92	78.604	ENSMFAG00000040385	NCL	92	77.845	Macaca_fascicularis
MGP_SPRETEiJ_G0015164	Ncl	92	78.604	ENSMMUG00000018094	NCL	97	86.319	Macaca_mulatta
MGP_SPRETEiJ_G0015164	Ncl	74	89.091	ENSMNEG00000023839	NCL	96	86.319	Macaca_nemestrina
MGP_SPRETEiJ_G0015164	Ncl	92	78.723	ENSMLEG00000028935	NCL	92	77.964	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0015164	Ncl	92	80.091	ENSMICG00000002538	-	92	77.812	Microcebus_murinus
MGP_SPRETEiJ_G0015164	Ncl	92	65.284	ENSMICG00000029975	-	87	75.177	Microcebus_murinus
MGP_SPRETEiJ_G0015164	Ncl	100	97.458	MGP_CAROLIEiJ_G0014362	Ncl	100	97.458	Mus_caroli
MGP_SPRETEiJ_G0015164	Ncl	100	99.011	ENSMUSG00000026234	Ncl	100	99.011	Mus_musculus
MGP_SPRETEiJ_G0015164	Ncl	92	92.284	MGP_PahariEiJ_G0027599	Ncl	92	92.901	Mus_pahari
MGP_SPRETEiJ_G0015164	Ncl	92	75.452	ENSMLUG00000014547	NCL	92	76.169	Myotis_lucifugus
MGP_SPRETEiJ_G0015164	Ncl	52	78.342	ENSNGAG00000006188	-	54	78.610	Nannospalax_galili
MGP_SPRETEiJ_G0015164	Ncl	92	85.236	ENSNGAG00000002454	-	91	85.084	Nannospalax_galili
MGP_SPRETEiJ_G0015164	Ncl	61	71.850	ENSNLEG00000014107	-	85	64.145	Nomascus_leucogenys
MGP_SPRETEiJ_G0015164	Ncl	91	74.006	ENSODEG00000003281	-	91	73.130	Octodon_degus
MGP_SPRETEiJ_G0015164	Ncl	91	60.469	ENSODEG00000007803	-	90	59.099	Octodon_degus
MGP_SPRETEiJ_G0015164	Ncl	81	72.414	ENSODEG00000002441	-	86	77.119	Octodon_degus
MGP_SPRETEiJ_G0015164	Ncl	92	71.319	ENSOCUG00000004312	NCL	100	72.612	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0015164	Ncl	62	70.522	ENSOARG00000004072	-	71	70.737	Ovis_aries
MGP_SPRETEiJ_G0015164	Ncl	88	59.859	ENSOARG00000013270	-	100	58.904	Ovis_aries
MGP_SPRETEiJ_G0015164	Ncl	61	83.105	ENSOARG00000020709	-	92	73.966	Ovis_aries
MGP_SPRETEiJ_G0015164	Ncl	61	82.679	ENSOARG00000013710	-	73	82.529	Ovis_aries
MGP_SPRETEiJ_G0015164	Ncl	75	89.091	ENSPPAG00000011619	NCL	98	86.275	Pan_paniscus
MGP_SPRETEiJ_G0015164	Ncl	92	78.485	ENSPPRG00000012603	NCL	92	77.121	Panthera_pardus
MGP_SPRETEiJ_G0015164	Ncl	91	78.287	ENSPTIG00000010393	NCL	91	76.911	Panthera_tigris_altaica
MGP_SPRETEiJ_G0015164	Ncl	92	78.604	ENSPTRG00000013025	NCL	98	85.993	Pan_troglodytes
MGP_SPRETEiJ_G0015164	Ncl	92	78.604	ENSPANG00000010292	NCL	92	77.845	Papio_anubis
MGP_SPRETEiJ_G0015164	Ncl	91	80.800	ENSPCOG00000004160	-	94	73.733	Propithecus_coquereli
MGP_SPRETEiJ_G0015164	Ncl	92	80.909	ENSPCOG00000003051	-	91	79.091	Propithecus_coquereli
MGP_SPRETEiJ_G0015164	Ncl	92	80.335	ENSPVAG00000000297	NCL	92	79.116	Pteropus_vampyrus
MGP_SPRETEiJ_G0015164	Ncl	92	90.701	ENSRNOG00000018273	Ncl	92	90.701	Rattus_norvegicus
MGP_SPRETEiJ_G0015164	Ncl	92	75.380	ENSRBIG00000037525	-	91	73.100	Rhinopithecus_bieti
MGP_SPRETEiJ_G0015164	Ncl	54	87.197	ENSRBIG00000035396	-	79	85.570	Rhinopithecus_bieti
MGP_SPRETEiJ_G0015164	Ncl	94	74.478	ENSRROG00000036103	-	99	73.955	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0015164	Ncl	92	78.604	ENSRROG00000028756	-	91	77.542	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0015164	Ncl	61	75.626	ENSSBOG00000027549	-	91	70.776	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0015164	Ncl	53	86.544	ENSSBOG00000029193	-	92	76.853	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0015164	Ncl	92	77.361	ENSSSCG00000016275	NCL	92	77.361	Sus_scrofa
MGP_SPRETEiJ_G0015164	Ncl	55	74.406	ENSTBEG00000001546	-	85	69.067	Tupaia_belangeri
MGP_SPRETEiJ_G0015164	Ncl	65	71.955	ENSTBEG00000002469	-	66	71.714	Tupaia_belangeri
MGP_SPRETEiJ_G0015164	Ncl	92	76.900	ENSTTRG00000009094	NCL	91	76.408	Tursiops_truncatus
MGP_SPRETEiJ_G0015164	Ncl	67	86.316	ENSUAMG00000005639	NCL	88	82.167	Ursus_americanus
MGP_SPRETEiJ_G0015164	Ncl	53	86.544	ENSUMAG00000015789	NCL	92	77.169	Ursus_maritimus
MGP_SPRETEiJ_G0015164	Ncl	69	78.873	ENSVPAG00000001796	NCL	69	78.873	Vicugna_pacos
MGP_SPRETEiJ_G0015164	Ncl	92	77.147	ENSVVUG00000025564	NCL	91	75.153	Vulpes_vulpes