EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0015511 (Gene tree)
Gene ID: -
Gene Symbol: Smg7
Alias: 9430023P16Rik
Full Name: Smg-7 homolog%2C nonsense mediated mRNA decay factor (C. elegans)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 72255 bases
Position: chr1:154523293-154595547
Accession: 2682334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0021440	EST1	PF10374.9	5.7e-25	1	1
MGP_SPRETEiJ_P0021442	EST1	PF10374.9	5.8e-25	1	1
MGP_SPRETEiJ_P0021441	EST1	PF10374.9	5.8e-25	1	1
MGP_SPRETEiJ_P0021440	EST1_DNA_bind	PF10373.9	3.5e-55	1	1
MGP_SPRETEiJ_P0021442	EST1_DNA_bind	PF10373.9	3.5e-55	1	1
MGP_SPRETEiJ_P0021441	EST1_DNA_bind	PF10373.9	3.5e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0021440	-	5799	-	MGP_SPRETEiJ_P0021440	1134 (aa)	-	-
MGP_SPRETEiJ_T0021441	-	5824	-	MGP_SPRETEiJ_P0021441	1146 (aa)	-	-
MGP_SPRETEiJ_T0021442	-	3928	-	MGP_SPRETEiJ_P0021442	1138 (aa)	-	-
MGP_SPRETEiJ_T0021443	-	570	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0021444	-	672	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0021445	-	525	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0015511's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0015511's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0015511	Smg7	100	96.084	ENSG00000116698	SMG7	100	96.032	Homo_sapiens
MGP_SPRETEiJ_G0015511	Smg7	89	73.094	ENSAPOG00000009611	smg7	95	73.716	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0015511	Smg7	99	94.420	ENSAMEG00000002357	SMG7	99	94.597	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0015511	Smg7	97	63.758	ENSACIG00000015152	smg7	98	67.123	Amphilophus_citrinellus
MGP_SPRETEiJ_G0015511	Smg7	99	65.470	ENSAOCG00000013538	smg7	99	65.983	Amphiprion_ocellaris
MGP_SPRETEiJ_G0015511	Smg7	99	65.329	ENSAPEG00000007851	smg7	99	65.756	Amphiprion_percula
MGP_SPRETEiJ_G0015511	Smg7	99	65.110	ENSATEG00000006931	smg7	99	65.365	Anabas_testudineus
MGP_SPRETEiJ_G0015511	Smg7	100	87.402	ENSAPLG00000015811	SMG7	100	87.227	Anas_platyrhynchos
MGP_SPRETEiJ_G0015511	Smg7	100	83.960	ENSACAG00000014989	SMG7	100	84.211	Anolis_carolinensis
MGP_SPRETEiJ_G0015511	Smg7	100	94.723	ENSANAG00000028114	SMG7	100	94.723	Aotus_nancymaae
MGP_SPRETEiJ_G0015511	Smg7	99	64.601	ENSACLG00000022079	smg7	99	65.296	Astatotilapia_calliptera
MGP_SPRETEiJ_G0015511	Smg7	99	66.783	ENSAMXG00000020809	smg7	99	67.072	Astyanax_mexicanus
MGP_SPRETEiJ_G0015511	Smg7	100	94.865	ENSBTAG00000008003	SMG7	100	94.019	Bos_taurus
MGP_SPRETEiJ_G0015511	Smg7	100	95.648	ENSCJAG00000005135	SMG7	99	95.648	Callithrix_jacchus
MGP_SPRETEiJ_G0015511	Smg7	100	95.387	ENSCAFG00000013276	SMG7	98	95.561	Canis_familiaris
MGP_SPRETEiJ_G0015511	Smg7	100	95.387	ENSCAFG00020015475	SMG7	98	95.561	Canis_lupus_dingo
MGP_SPRETEiJ_G0015511	Smg7	99	94.704	ENSCHIG00000018192	SMG7	99	94.704	Capra_hircus
MGP_SPRETEiJ_G0015511	Smg7	100	95.213	ENSTSYG00000002667	SMG7	100	94.283	Carlito_syrichta
MGP_SPRETEiJ_G0015511	Smg7	100	95.648	ENSCPOG00000008906	SMG7	99	95.822	Cavia_porcellus
MGP_SPRETEiJ_G0015511	Smg7	100	94.811	ENSCCAG00000028596	SMG7	100	94.811	Cebus_capucinus
MGP_SPRETEiJ_G0015511	Smg7	100	96.258	ENSCATG00000011063	SMG7	100	95.163	Cercocebus_atys
MGP_SPRETEiJ_G0015511	Smg7	100	95.474	ENSCLAG00000010751	SMG7	100	95.474	Chinchilla_lanigera
MGP_SPRETEiJ_G0015511	Smg7	100	96.084	ENSCSAG00000012654	SMG7	98	96.084	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0015511	Smg7	92	87.297	ENSCHOG00000010522	SMG7	93	87.584	Choloepus_hoffmanni
MGP_SPRETEiJ_G0015511	Smg7	100	89.833	ENSCPBG00000015724	SMG7	100	89.571	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0015511	Smg7	99	95.035	ENSCANG00000015680	SMG7	99	95.035	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0015511	Smg7	100	98.258	ENSCGRG00001013705	Smg7	100	98.246	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0015511	Smg7	100	98.258	ENSCGRG00000018401	Smg7	100	98.258	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0015511	Smg7	95	69.000	ENSCVAG00000011842	smg7	99	68.500	Cyprinodon_variegatus
MGP_SPRETEiJ_G0015511	Smg7	99	66.724	ENSDARG00000060767	smg7	99	66.811	Danio_rerio
MGP_SPRETEiJ_G0015511	Smg7	100	95.213	ENSDORG00000007331	Smg7	100	95.213	Dipodomys_ordii
MGP_SPRETEiJ_G0015511	Smg7	97	94.293	ENSETEG00000002654	SMG7	100	94.293	Echinops_telfairi
MGP_SPRETEiJ_G0015511	Smg7	100	96.231	ENSEASG00005006524	SMG7	100	96.231	Equus_asinus_asinus
MGP_SPRETEiJ_G0015511	Smg7	100	96.144	ENSECAG00000004313	SMG7	100	96.144	Equus_caballus
MGP_SPRETEiJ_G0015511	Smg7	97	94.299	ENSEEUG00000002024	SMG7	94	94.299	Erinaceus_europaeus
MGP_SPRETEiJ_G0015511	Smg7	92	72.476	ENSELUG00000010293	smg7	99	65.252	Esox_lucius
MGP_SPRETEiJ_G0015511	Smg7	100	95.968	ENSFCAG00000010900	SMG7	100	95.968	Felis_catus
MGP_SPRETEiJ_G0015511	Smg7	98	82.568	ENSFALG00000003047	SMG7	100	82.483	Ficedula_albicollis
MGP_SPRETEiJ_G0015511	Smg7	99	95.606	ENSFDAG00000012121	SMG7	99	96.075	Fukomys_damarensis
MGP_SPRETEiJ_G0015511	Smg7	99	64.182	ENSFHEG00000011073	smg7	99	63.636	Fundulus_heteroclitus
MGP_SPRETEiJ_G0015511	Smg7	78	74.242	ENSGMOG00000004916	smg7	94	67.299	Gadus_morhua
MGP_SPRETEiJ_G0015511	Smg7	100	88.112	ENSGALG00000004667	SMG7	100	87.937	Gallus_gallus
MGP_SPRETEiJ_G0015511	Smg7	99	64.089	ENSGAFG00000019000	smg7	99	63.918	Gambusia_affinis
MGP_SPRETEiJ_G0015511	Smg7	97	64.336	ENSGACG00000001634	smg7	99	64.367	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0015511	Smg7	100	96.171	ENSGGOG00000002342	SMG7	100	95.075	Gorilla_gorilla
MGP_SPRETEiJ_G0015511	Smg7	99	64.327	ENSHBUG00000003726	smg7	97	72.081	Haplochromis_burtoni
MGP_SPRETEiJ_G0015511	Smg7	100	94.723	ENSHGLG00000009353	SMG7	100	95.722	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0015511	Smg7	100	94.811	ENSHGLG00100009637	-	100	94.811	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0015511	Smg7	100	88.147	ENSHGLG00100004878	-	100	88.147	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0015511	Smg7	99	67.334	ENSIPUG00000016997	smg7	99	67.596	Ictalurus_punctatus
MGP_SPRETEiJ_G0015511	Smg7	100	96.345	ENSSTOG00000000401	SMG7	100	96.345	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0015511	Smg7	100	95.088	ENSJJAG00000012351	Smg7	100	95.088	Jaculus_jaculus
MGP_SPRETEiJ_G0015511	Smg7	90	69.500	ENSKMAG00000004900	smg7	97	69.500	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0015511	Smg7	99	65.345	ENSLBEG00000002983	smg7	99	65.517	Labrus_bergylta
MGP_SPRETEiJ_G0015511	Smg7	52	62.040	ENSLBEG00000005220	-	75	63.923	Labrus_bergylta
MGP_SPRETEiJ_G0015511	Smg7	99	75.347	ENSLACG00000000972	SMG7	99	75.239	Latimeria_chalumnae
MGP_SPRETEiJ_G0015511	Smg7	99	67.391	ENSLOCG00000002010	smg7	99	67.809	Lepisosteus_oculatus
MGP_SPRETEiJ_G0015511	Smg7	100	95.561	ENSLAFG00000008186	SMG7	100	95.561	Loxodonta_africana
MGP_SPRETEiJ_G0015511	Smg7	100	96.345	ENSMFAG00000031653	SMG7	100	96.319	Macaca_fascicularis
MGP_SPRETEiJ_G0015511	Smg7	100	96.258	ENSMMUG00000018458	SMG7	98	96.258	Macaca_mulatta
MGP_SPRETEiJ_G0015511	Smg7	100	95.163	ENSMNEG00000034798	SMG7	100	95.163	Macaca_nemestrina
MGP_SPRETEiJ_G0015511	Smg7	100	96.258	ENSMLEG00000037170	SMG7	100	95.163	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0015511	Smg7	88	64.378	ENSMAMG00000018733	smg7	85	65.019	Mastacembelus_armatus
MGP_SPRETEiJ_G0015511	Smg7	99	65.073	ENSMZEG00005015247	smg7	99	65.296	Maylandia_zebra
MGP_SPRETEiJ_G0015511	Smg7	99	87.809	ENSMGAG00000001561	SMG7	99	87.633	Meleagris_gallopavo
MGP_SPRETEiJ_G0015511	Smg7	100	98.432	ENSMAUG00000019484	Smg7	100	98.432	Mesocricetus_auratus
MGP_SPRETEiJ_G0015511	Smg7	100	96.084	ENSMICG00000007145	SMG7	100	96.084	Microcebus_murinus
MGP_SPRETEiJ_G0015511	Smg7	100	98.171	ENSMOCG00000020748	Smg7	100	98.171	Microtus_ochrogaster
MGP_SPRETEiJ_G0015511	Smg7	99	64.211	ENSMMOG00000001524	smg7	99	64.292	Mola_mola
MGP_SPRETEiJ_G0015511	Smg7	92	90.987	ENSMODG00000007139	SMG7	99	90.987	Monodelphis_domestica
MGP_SPRETEiJ_G0015511	Smg7	99	64.605	ENSMALG00000000061	smg7	93	67.164	Monopterus_albus
MGP_SPRETEiJ_G0015511	Smg7	100	99.477	MGP_CAROLIEiJ_G0014704	Smg7	100	99.477	Mus_caroli
MGP_SPRETEiJ_G0015511	Smg7	100	99.913	ENSMUSG00000042772	Smg7	100	99.913	Mus_musculus
MGP_SPRETEiJ_G0015511	Smg7	100	99.216	MGP_PahariEiJ_G0027940	Smg7	100	99.216	Mus_pahari
MGP_SPRETEiJ_G0015511	Smg7	98	95.722	ENSMPUG00000011732	SMG7	97	95.900	Mustela_putorius_furo
MGP_SPRETEiJ_G0015511	Smg7	99	94.969	ENSMLUG00000015417	SMG7	99	94.969	Myotis_lucifugus
MGP_SPRETEiJ_G0015511	Smg7	100	97.038	ENSNGAG00000009836	Smg7	100	97.038	Nannospalax_galili
MGP_SPRETEiJ_G0015511	Smg7	98	60.730	ENSNBRG00000024343	smg7	98	70.000	Neolamprologus_brichardi
MGP_SPRETEiJ_G0015511	Smg7	100	96.258	ENSNLEG00000018018	SMG7	100	95.163	Nomascus_leucogenys
MGP_SPRETEiJ_G0015511	Smg7	77	85.573	ENSMEUG00000004681	SMG7	73	91.870	Notamacropus_eugenii
MGP_SPRETEiJ_G0015511	Smg7	96	83.836	ENSOPRG00000013942	SMG7	96	83.562	Ochotona_princeps
MGP_SPRETEiJ_G0015511	Smg7	100	95.735	ENSODEG00000010390	SMG7	100	95.735	Octodon_degus
MGP_SPRETEiJ_G0015511	Smg7	99	64.213	ENSONIG00000000277	smg7	99	64.902	Oreochromis_niloticus
MGP_SPRETEiJ_G0015511	Smg7	98	90.426	ENSOANG00000000994	SMG7	100	90.337	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0015511	Smg7	100	88.860	ENSOCUG00000005887	SMG7	94	89.034	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0015511	Smg7	99	62.845	ENSORLG00000007314	smg7	70	92.105	Oryzias_latipes
MGP_SPRETEiJ_G0015511	Smg7	99	63.276	ENSORLG00020015779	smg7	99	63.190	Oryzias_latipes_hni
MGP_SPRETEiJ_G0015511	Smg7	99	65.056	ENSORLG00015012289	smg7	99	63.017	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0015511	Smg7	99	62.646	ENSOMEG00000002328	smg7	99	62.646	Oryzias_melastigma
MGP_SPRETEiJ_G0015511	Smg7	97	95.195	ENSOGAG00000003107	SMG7	94	95.376	Otolemur_garnettii
MGP_SPRETEiJ_G0015511	Smg7	100	94.865	ENSOARG00000001352	SMG7	98	94.865	Ovis_aries
MGP_SPRETEiJ_G0015511	Smg7	100	95.163	ENSPPAG00000031619	SMG7	100	95.163	Pan_paniscus
MGP_SPRETEiJ_G0015511	Smg7	100	95.735	ENSPPRG00000011222	SMG7	100	94.987	Panthera_pardus
MGP_SPRETEiJ_G0015511	Smg7	96	95.442	ENSPTIG00000007242	SMG7	100	91.354	Panthera_tigris_altaica
MGP_SPRETEiJ_G0015511	Smg7	100	95.163	ENSPTRG00000001764	SMG7	100	95.163	Pan_troglodytes
MGP_SPRETEiJ_G0015511	Smg7	100	96.258	ENSPANG00000004520	SMG7	100	95.163	Papio_anubis
MGP_SPRETEiJ_G0015511	Smg7	99	64.267	ENSPKIG00000007242	smg7	99	69.000	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0015511	Smg7	99	90.821	ENSPSIG00000012201	SMG7	99	90.291	Pelodiscus_sinensis
MGP_SPRETEiJ_G0015511	Smg7	71	42.739	ENSPMGG00000021833	smg7	89	54.000	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0015511	Smg7	100	97.387	ENSPEMG00000011315	Smg7	100	97.387	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0015511	Smg7	100	91.476	ENSPCIG00000003786	SMG7	100	91.301	Phascolarctos_cinereus
MGP_SPRETEiJ_G0015511	Smg7	99	62.841	ENSPFOG00000019219	smg7	99	62.954	Poecilia_formosa
MGP_SPRETEiJ_G0015511	Smg7	99	64.175	ENSPLAG00000001446	smg7	99	64.089	Poecilia_latipinna
MGP_SPRETEiJ_G0015511	Smg7	96	63.354	ENSPMEG00000005218	smg7	99	63.265	Poecilia_mexicana
MGP_SPRETEiJ_G0015511	Smg7	87	61.220	ENSPREG00000019039	smg7	91	61.160	Poecilia_reticulata
MGP_SPRETEiJ_G0015511	Smg7	100	95.251	ENSPPYG00000000427	SMG7	100	95.251	Pongo_abelii
MGP_SPRETEiJ_G0015511	Smg7	95	84.133	ENSPCAG00000008360	SMG7	95	83.333	Procavia_capensis
MGP_SPRETEiJ_G0015511	Smg7	100	96.084	ENSPCOG00000011996	SMG7	98	96.084	Propithecus_coquereli
MGP_SPRETEiJ_G0015511	Smg7	92	89.388	ENSPVAG00000000851	SMG7	89	89.712	Pteropus_vampyrus
MGP_SPRETEiJ_G0015511	Smg7	99	65.236	ENSPNYG00000007643	smg7	99	65.150	Pundamilia_nyererei
MGP_SPRETEiJ_G0015511	Smg7	99	67.331	ENSPNAG00000011374	smg7	98	68.182	Pygocentrus_nattereri
MGP_SPRETEiJ_G0015511	Smg7	100	98.433	ENSRNOG00000027962	Smg7	100	98.422	Rattus_norvegicus
MGP_SPRETEiJ_G0015511	Smg7	100	96.171	ENSRBIG00000036316	SMG7	100	95.075	Rhinopithecus_bieti
MGP_SPRETEiJ_G0015511	Smg7	100	96.171	ENSRROG00000035719	SMG7	100	96.144	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0015511	Smg7	100	95.706	ENSSBOG00000023454	SMG7	100	95.706	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0015511	Smg7	100	91.308	ENSSHAG00000013147	SMG7	100	91.045	Sarcophilus_harrisii
MGP_SPRETEiJ_G0015511	Smg7	99	68.614	ENSSFOG00015017252	smg7	99	76.316	Scleropages_formosus
MGP_SPRETEiJ_G0015511	Smg7	99	64.884	ENSSMAG00000006067	smg7	99	64.944	Scophthalmus_maximus
MGP_SPRETEiJ_G0015511	Smg7	95	71.210	ENSSDUG00000017543	smg7	99	65.004	Seriola_dumerili
MGP_SPRETEiJ_G0015511	Smg7	99	88.339	ENSSPUG00000002064	SMG7	99	88.163	Sphenodon_punctatus
MGP_SPRETEiJ_G0015511	Smg7	100	65.401	ENSSPAG00000008733	smg7	100	65.491	Stegastes_partitus
MGP_SPRETEiJ_G0015511	Smg7	100	95.706	ENSSSCG00000015558	SMG7	100	95.706	Sus_scrofa
MGP_SPRETEiJ_G0015511	Smg7	99	87.489	ENSTGUG00000003928	SMG7	100	87.401	Taeniopygia_guttata
MGP_SPRETEiJ_G0015511	Smg7	99	63.499	ENSTNIG00000002802	smg7	99	63.376	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0015511	Smg7	77	94.492	ENSTBEG00000003220	SMG7	75	94.492	Tupaia_belangeri
MGP_SPRETEiJ_G0015511	Smg7	96	95.434	ENSTTRG00000014778	SMG7	94	95.434	Tursiops_truncatus
MGP_SPRETEiJ_G0015511	Smg7	96	91.507	ENSUAMG00000017473	SMG7	100	91.689	Ursus_americanus
MGP_SPRETEiJ_G0015511	Smg7	96	95.541	ENSUMAG00000016389	SMG7	100	95.723	Ursus_maritimus
MGP_SPRETEiJ_G0015511	Smg7	100	95.530	ENSVVUG00000008976	SMG7	100	95.706	Vulpes_vulpes
MGP_SPRETEiJ_G0015511	Smg7	100	70.259	ENSXETG00000012528	smg7	100	69.922	Xenopus_tropicalis
MGP_SPRETEiJ_G0015511	Smg7	99	64.114	ENSXMAG00000007123	smg7	99	64.286	Xiphophorus_maculatus